ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9m02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_480292.1| Oryza sativa (japonica cultivar-group), mRNA 200 2e-48
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 200 2e-48
3dbj|AP005606.3| Oryza sativa (japonica cultivar-group) genomic D... 200 2e-48
4dbj|AP005501.3| Oryza sativa (japonica cultivar-group) genomic D... 200 2e-48
5dbj|AK066234.1| Oryza sativa (japonica cultivar-group) cDNA clon... 200 2e-48
6dbj|AK061805.1| Oryza sativa (japonica cultivar-group) cDNA clon... 200 2e-48
7gb|AY111946.1| Zea mays CL296_1 mRNA sequence 163 5e-37
8ref|XM_474079.1| Oryza sativa (japonica cultivar-group), predic... 129 7e-27
9emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4,... 129 7e-27
10dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 129 7e-27
11emb|AL732332.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 129 7e-27
12emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4,... 129 7e-27
13dbj|AK069061.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 2e-24
14ref|XM_467770.1| Oryza sativa (japonica cultivar-group), mRNA 82 1e-12
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
16dbj|AP005733.3| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
17dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
18dbj|AK072402.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 1e-12
19dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 70 5e-09
20dbj|AP004031.3| Oryza sativa (japonica cultivar-group) genomic D... 70 5e-09
21ref|NM_102447.3| Arabidopsis thaliana ATCUL3/ATCUL3A/CUL3/CUL3A;... 58 2e-05
22emb|AJ344252.1|ATH344252 Arabidopsis thaliana mRNA for cullin 3a... 58 2e-05
23emb|AJ319540.1|ATH319540 Arabidopsis thaliana partial mRNA for c... 58 2e-05
24gb|AC006535.7|AC006535 Genomic sequence for Arabidopsis thaliana... 58 2e-05
25gb|AC005508.1|AC005508 Arabidopsis thaliana chromosome I BAC T2P... 58 2e-05
26gb|AC122544.1| Genomic sequence for Lycopersicon esculentum, clo... 50 0.005
27gb|AC146568.11| Medicago truncatula clone mth2-101o18, complete ... 48 0.020
28ref|XM_851039.1| PREDICTED: Canis familiaris similar to Cullin-1... 46 0.079
29ref|XM_532734.2| PREDICTED: Canis familiaris similar to Cullin-1... 46 0.079
30ref|XM_850961.1| PREDICTED: Canis familiaris similar to Cullin-1... 46 0.079
31ref|XM_843309.1| PREDICTED: Canis familiaris similar to Cullin-1... 46 0.079
32ref|XM_870269.1| PREDICTED: Bos taurus similar to cullin 4A isof... 44 0.31
33ref|NM_130116.2| Arabidopsis thaliana nucleotide binding AT2G455... 40 4.9
34gb|AC123844.4| Mus musculus BAC clone RP23-416P14 from chromosom... 40 4.9
35gb|AC072022.19| Homo sapiens 3 BAC RP11-211G3 (Roswell Park Canc... 40 4.9
36gb|AC003680.3| Arabidopsis thaliana chromosome 2 BAC F17K2 genom... 40 4.9
37emb|AL772396.7| Zebrafish DNA sequence from clone CH211-253F14, ... 40 4.9

>ref|XM_480292.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2507

 Score =  200 bits (101), Expect = 2e-48
 Identities = 185/213 (86%)
 Strand = Plus / Minus

                                                                        
Query: 155  taattacgcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacg 214
            |||||| |||||||| ||||| || ||||| |||  |||||||||||||| |||||| ||
Sbjct: 2412 taattatgcaagataccggtacagtttcctgtctgtcttgtccctctccaagaactcgcg 2353

                                                                        
Query: 215  ctcaatcagggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctg 274
            ||||||||| |||||||  || |||||||||||||| |||||||||| ||| || | |||
Sbjct: 2352 ctcaatcagagactcgactctcttcttgatcaccacagggttcggcatgaaacgaggctg 2293

                                                                        
Query: 275  gagctgcttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcat 334
             ||||||||||| |||||||| |||||||||||||| ||||| || ||||| ||||||||
Sbjct: 2292 cagctgcttcgtcacctctgtcactatgctgttgtgatccagcactctcctcgacttcat 2233

                                             
Query: 335  gatcctcacgatggcggcctcaatctggggctt 367
            ||||||||||||||| ||||| ||||| |||||
Sbjct: 2232 gatcctcacgatggccgcctcgatctgaggctt 2200



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  200 bits (101), Expect = 2e-48
 Identities = 185/213 (86%)
 Strand = Plus / Plus

                                                                           
Query: 155     taattacgcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacg 214
               |||||| |||||||| ||||| || ||||| |||  |||||||||||||| |||||| ||
Sbjct: 4147167 taattatgcaagataccggtacagtttcctgtctgtcttgtccctctccaagaactcgcg 4147226

                                                                           
Query: 215     ctcaatcagggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctg 274
               ||||||||| |||||||  || |||||||||||||| |||||||||| ||| || | |||
Sbjct: 4147227 ctcaatcagagactcgactctcttcttgatcaccacagggttcggcatgaaacgaggctg 4147286

                                                                           
Query: 275     gagctgcttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcat 334
                ||||||||||| |||||||| |||||||||||||| ||||| || ||||| ||||||||
Sbjct: 4147287 cagctgcttcgtcacctctgtcactatgctgttgtgatccagcactctcctcgacttcat 4147346

                                                
Query: 335     gatcctcacgatggcggcctcaatctggggctt 367
               ||||||||||||||| ||||| ||||| |||||
Sbjct: 4147347 gatcctcacgatggccgcctcgatctgaggctt 4147379



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>dbj|AP005606.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1590_E05
          Length = 148205

 Score =  200 bits (101), Expect = 2e-48
 Identities = 185/213 (86%)
 Strand = Plus / Plus

                                                                         
Query: 155   taattacgcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacg 214
             |||||| |||||||| ||||| || ||||| |||  |||||||||||||| |||||| ||
Sbjct: 46790 taattatgcaagataccggtacagtttcctgtctgtcttgtccctctccaagaactcgcg 46849

                                                                         
Query: 215   ctcaatcagggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctg 274
             ||||||||| |||||||  || |||||||||||||| |||||||||| ||| || | |||
Sbjct: 46850 ctcaatcagagactcgactctcttcttgatcaccacagggttcggcatgaaacgaggctg 46909

                                                                         
Query: 275   gagctgcttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcat 334
              ||||||||||| |||||||| |||||||||||||| ||||| || ||||| ||||||||
Sbjct: 46910 cagctgcttcgtcacctctgtcactatgctgttgtgatccagcactctcctcgacttcat 46969

                                              
Query: 335   gatcctcacgatggcggcctcaatctggggctt 367
             ||||||||||||||| ||||| ||||| |||||
Sbjct: 46970 gatcctcacgatggccgcctcgatctgaggctt 47002



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>dbj|AP005501.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0458D06
          Length = 166038

 Score =  200 bits (101), Expect = 2e-48
 Identities = 185/213 (86%)
 Strand = Plus / Plus

                                                                          
Query: 155    taattacgcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacg 214
              |||||| |||||||| ||||| || ||||| |||  |||||||||||||| |||||| ||
Sbjct: 140280 taattatgcaagataccggtacagtttcctgtctgtcttgtccctctccaagaactcgcg 140339

                                                                          
Query: 215    ctcaatcagggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctg 274
              ||||||||| |||||||  || |||||||||||||| |||||||||| ||| || | |||
Sbjct: 140340 ctcaatcagagactcgactctcttcttgatcaccacagggttcggcatgaaacgaggctg 140399

                                                                          
Query: 275    gagctgcttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcat 334
               ||||||||||| |||||||| |||||||||||||| ||||| || ||||| ||||||||
Sbjct: 140400 cagctgcttcgtcacctctgtcactatgctgttgtgatccagcactctcctcgacttcat 140459

                                               
Query: 335    gatcctcacgatggcggcctcaatctggggctt 367
              ||||||||||||||| ||||| ||||| |||||
Sbjct: 140460 gatcctcacgatggccgcctcgatctgaggctt 140492



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>dbj|AK066234.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013058A05, full
            insert sequence
          Length = 2506

 Score =  200 bits (101), Expect = 2e-48
 Identities = 185/213 (86%)
 Strand = Plus / Minus

                                                                        
Query: 155  taattacgcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacg 214
            |||||| |||||||| ||||| || ||||| |||  |||||||||||||| |||||| ||
Sbjct: 2411 taattatgcaagataccggtacagtttcctgtctgtcttgtccctctccaagaactcgcg 2352

                                                                        
Query: 215  ctcaatcagggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctg 274
            ||||||||| |||||||  || |||||||||||||| |||||||||| ||| || | |||
Sbjct: 2351 ctcaatcagagactcgactctcttcttgatcaccacagggttcggcatgaaacgaggctg 2292

                                                                        
Query: 275  gagctgcttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcat 334
             ||||||||||| |||||||| |||||||||||||| ||||| || ||||| ||||||||
Sbjct: 2291 cagctgcttcgtcacctctgtcactatgctgttgtgatccagcactctcctcgacttcat 2232

                                             
Query: 335  gatcctcacgatggcggcctcaatctggggctt 367
            ||||||||||||||| ||||| ||||| |||||
Sbjct: 2231 gatcctcacgatggccgcctcgatctgaggctt 2199



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>dbj|AK061805.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-A02, full
           insert sequence
          Length = 1078

 Score =  200 bits (101), Expect = 2e-48
 Identities = 185/213 (86%)
 Strand = Plus / Minus

                                                                       
Query: 155 taattacgcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacg 214
           |||||| |||||||| ||||| || ||||| |||  |||||||||||||| |||||| ||
Sbjct: 983 taattatgcaagataccggtacagtttcctgtctgtcttgtccctctccaagaactcgcg 924

                                                                       
Query: 215 ctcaatcagggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctg 274
           ||||||||| |||||||  || |||||||||||||| |||||||||| ||| || | |||
Sbjct: 923 ctcaatcagagactcgactctcttcttgatcaccacagggttcggcatgaaacgaggctg 864

                                                                       
Query: 275 gagctgcttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcat 334
            ||||||||||| |||||||| |||||||||||||| ||||| || ||||| ||||||||
Sbjct: 863 cagctgcttcgtcacctctgtcactatgctgttgtgatccagcactctcctcgacttcat 804

                                            
Query: 335 gatcctcacgatggcggcctcaatctggggctt 367
           ||||||||||||||| ||||| ||||| |||||
Sbjct: 803 gatcctcacgatggccgcctcgatctgaggctt 771



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>gb|AY111946.1| Zea mays CL296_1 mRNA sequence
          Length = 1397

 Score =  163 bits (82), Expect = 5e-37
 Identities = 175/206 (84%)
 Strand = Plus / Minus

                                                                        
Query: 162  gcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacgctcaatc 221
            |||||||||||||| | |||||| || |||||||||| |||||||||||| ||||| || 
Sbjct: 1107 gcaagatagcggtacatcttcctgtccaccttgtcccgctccaggaactcgcgctcgatg 1048

                                                                        
Query: 222  agggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctggagctgc 281
            || ||||||||||  |||||||||||||| ||||| |||| ||| || | ||| | ||||
Sbjct: 1047 agcgactcgatccgcttcttgatcaccacggggtttggcatgaaacggggctgcaactgc 988

                                                                        
Query: 282  ttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcatgatcctc 341
            || || ||||| || | ||||||||||||||| || |||||||| ||||||||||||| |
Sbjct: 987  tttgtcacctccgtcattatgctgttgtggtcgagaaccctccttgacttcatgatccgc 928

                                      
Query: 342  acgatggcggcctcaatctggggctt 367
            |||||||| ||||| ||||| |||||
Sbjct: 927  acgatggccgcctcgatctgtggctt 902



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>ref|XM_474079.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2196

 Score =  129 bits (65), Expect = 7e-27
 Identities = 164/197 (83%)
 Strand = Plus / Minus

                                                                        
Query: 162  gcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacgctcaatc 221
            |||||||| ||||| | |||||||||||||||||||||||||| |||||| | ||| |||
Sbjct: 2192 gcaagataacggtacatcttcctatctaccttgtccctctccaagaactccctctcgatc 2133

                                                                        
Query: 222  agggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctggagctgc 281
            |||||||| || |||||||| ||||| || || || ||||  ||||| |  || ||||||
Sbjct: 2132 agggactctattcttttctttatcacaacaggatttggcaaaaagcgcgattgaagctgc 2073

                                                                        
Query: 282  ttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcatgatcctc 341
            || || ||||| |||| |||||| |||||||||| ||| || |||||||||||||| || 
Sbjct: 2072 tttgtcacctccgtgattatgctattgtggtccaagactcttctggacttcatgattctg 2013

                             
Query: 342  acgatggcggcctcaat 358
            || || || ||||||||
Sbjct: 2012 acaattgcagcctcaat 1996



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>emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18,
              complete sequence
          Length = 150416

 Score =  129 bits (65), Expect = 7e-27
 Identities = 164/197 (83%)
 Strand = Plus / Minus

                                                                          
Query: 162    gcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacgctcaatc 221
              |||||||| ||||| | |||||||||||||||||||||||||| |||||| | ||| |||
Sbjct: 123891 gcaagataacggtacatcttcctatctaccttgtccctctccaagaactccctctcgatc 123832

                                                                          
Query: 222    agggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctggagctgc 281
              |||||||| || |||||||| ||||| || || || ||||  ||||| |  || ||||||
Sbjct: 123831 agggactctattcttttctttatcacaacaggatttggcaaaaagcgcgattgaagctgc 123772

                                                                          
Query: 282    ttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcatgatcctc 341
              || || ||||| |||| |||||| |||||||||| ||| || |||||||||||||| || 
Sbjct: 123771 tttgtcacctccgtgattatgctattgtggtccaagactcttctggacttcatgattctg 123712

                               
Query: 342    acgatggcggcctcaat 358
              || || || ||||||||
Sbjct: 123711 acaattgcagcctcaat 123695



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  129 bits (65), Expect = 7e-27
 Identities = 164/197 (83%)
 Strand = Plus / Minus

                                                                            
Query: 162      gcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacgctcaatc 221
                |||||||| ||||| | |||||||||||||||||||||||||| |||||| | ||| |||
Sbjct: 32764458 gcaagataacggtacatcttcctatctaccttgtccctctccaagaactccctctcgatc 32764399

                                                                            
Query: 222      agggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctggagctgc 281
                |||||||| || |||||||| ||||| || || || ||||  ||||| |  || ||||||
Sbjct: 32764398 agggactctattcttttctttatcacaacaggatttggcaaaaagcgcgattgaagctgc 32764339

                                                                            
Query: 282      ttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcatgatcctc 341
                || || ||||| |||| |||||| |||||||||| ||| || |||||||||||||| || 
Sbjct: 32764338 tttgtcacctccgtgattatgctattgtggtccaagactcttctggacttcatgattctg 32764279

                                 
Query: 342      acgatggcggcctcaat 358
                || || || ||||||||
Sbjct: 32764278 acaattgcagcctcaat 32764262



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>emb|AL732332.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F03, complete
             sequence
          Length = 91539

 Score =  129 bits (65), Expect = 7e-27
 Identities = 164/197 (83%)
 Strand = Plus / Minus

                                                                         
Query: 162   gcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacgctcaatc 221
             |||||||| ||||| | |||||||||||||||||||||||||| |||||| | ||| |||
Sbjct: 34708 gcaagataacggtacatcttcctatctaccttgtccctctccaagaactccctctcgatc 34649

                                                                         
Query: 222   agggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctggagctgc 281
             |||||||| || |||||||| ||||| || || || ||||  ||||| |  || ||||||
Sbjct: 34648 agggactctattcttttctttatcacaacaggatttggcaaaaagcgcgattgaagctgc 34589

                                                                         
Query: 282   ttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcatgatcctc 341
             || || ||||| |||| |||||| |||||||||| ||| || |||||||||||||| || 
Sbjct: 34588 tttgtcacctccgtgattatgctattgtggtccaagactcttctggacttcatgattctg 34529

                              
Query: 342   acgatggcggcctcaat 358
             || || || ||||||||
Sbjct: 34528 acaattgcagcctcaat 34512



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>emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G05,
             complete sequence
          Length = 142556

 Score =  129 bits (65), Expect = 7e-27
 Identities = 164/197 (83%)
 Strand = Plus / Minus

                                                                         
Query: 162   gcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacgctcaatc 221
             |||||||| ||||| | |||||||||||||||||||||||||| |||||| | ||| |||
Sbjct: 26748 gcaagataacggtacatcttcctatctaccttgtccctctccaagaactccctctcgatc 26689

                                                                         
Query: 222   agggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctggagctgc 281
             |||||||| || |||||||| ||||| || || || ||||  ||||| |  || ||||||
Sbjct: 26688 agggactctattcttttctttatcacaacaggatttggcaaaaagcgcgattgaagctgc 26629

                                                                         
Query: 282   ttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcatgatcctc 341
             || || ||||| |||| |||||| |||||||||| ||| || |||||||||||||| || 
Sbjct: 26628 tttgtcacctccgtgattatgctattgtggtccaagactcttctggacttcatgattctg 26569

                              
Query: 342   acgatggcggcctcaat 358
             || || || ||||||||
Sbjct: 26568 acaattgcagcctcaat 26552



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>dbj|AK069061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008J21, full
            insert sequence
          Length = 2584

 Score =  121 bits (61), Expect = 2e-24
 Identities = 163/197 (82%)
 Strand = Plus / Minus

                                                                        
Query: 162  gcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacgctcaatc 221
            |||||||| ||||| | |||||||||||||||||||||||||| |||||| | ||| |||
Sbjct: 2370 gcaagataacggtacatcttcctatctaccttgtccctctccaagaactccctctcgatc 2311

                                                                        
Query: 222  agggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctggagctgc 281
            |||||||| || |||||||| ||||| || || || ||||  ||||| |  || ||||||
Sbjct: 2310 agggactctattcttttctttatcacaacaggatttggcaaaaagcgcgattgaagctgc 2251

                                                                        
Query: 282  ttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcatgatcctc 341
            || || ||||| |||| || ||| |||||||||| ||| || |||||||||||||| || 
Sbjct: 2250 tttgtcacctccgtgattacgctattgtggtccaagactcttctggacttcatgattctg 2191

                             
Query: 342  acgatggcggcctcaat 358
            || || || ||||||||
Sbjct: 2190 acaattgcagcctcaat 2174



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>ref|XM_467770.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2534

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 158/197 (80%)
 Strand = Plus / Minus

                                                                        
Query: 162  gcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacgctcaatc 221
            ||||||||||| || | |||||||||| | ||||||||||| | ||| ||||||||||| 
Sbjct: 2304 gcaagatagcgatataacttcctatctgctttgtccctctctaagaattcacgctcaatt 2245

                                                                        
Query: 222  agggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctggagctgc 281
            || || || || | |||||| || || || || ||||||| ||| || || || |  |||
Sbjct: 2244 agagattctatgcgtttctttatgacaacaggattcggcatgaatcgggcttgcaattgc 2185

                                                                        
Query: 282  ttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcatgatcctc 341
            || |||||||| |  || |||||||| || |||| |||||||||||| ||||| ||||| 
Sbjct: 2184 ttggtaacctcagctacaatgctgttatgatccaagaccctcctggatttcataatcctg 2125

                             
Query: 342  acgatggcggcctcaat 358
            ||||| || ||||||||
Sbjct: 2124 acgatagcagcctcaat 2108



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 158/197 (80%)
 Strand = Plus / Plus

                                                                            
Query: 162      gcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacgctcaatc 221
                ||||||||||| || | |||||||||| | ||||||||||| | ||| ||||||||||| 
Sbjct: 31328477 gcaagatagcgatataacttcctatctgctttgtccctctctaagaattcacgctcaatt 31328536

                                                                            
Query: 222      agggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctggagctgc 281
                || || || || | |||||| || || || || ||||||| ||| || || || |  |||
Sbjct: 31328537 agagattctatgcgtttctttatgacaacaggattcggcatgaatcgggcttgcaattgc 31328596

                                                                            
Query: 282      ttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcatgatcctc 341
                || |||||||| |  || |||||||| || |||| |||||||||||| ||||| ||||| 
Sbjct: 31328597 ttggtaacctcagctacaatgctgttatgatccaagaccctcctggatttcataatcctg 31328656

                                 
Query: 342      acgatggcggcctcaat 358
                ||||| || ||||||||
Sbjct: 31328657 acgatagcagcctcaat 31328673



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>dbj|AP005733.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0024K03
          Length = 119796

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 158/197 (80%)
 Strand = Plus / Plus

                                                                         
Query: 162   gcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacgctcaatc 221
             ||||||||||| || | |||||||||| | ||||||||||| | ||| ||||||||||| 
Sbjct: 11051 gcaagatagcgatataacttcctatctgctttgtccctctctaagaattcacgctcaatt 11110

                                                                         
Query: 222   agggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctggagctgc 281
             || || || || | |||||| || || || || ||||||| ||| || || || |  |||
Sbjct: 11111 agagattctatgcgtttctttatgacaacaggattcggcatgaatcgggcttgcaattgc 11170

                                                                         
Query: 282   ttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcatgatcctc 341
             || |||||||| |  || |||||||| || |||| |||||||||||| ||||| ||||| 
Sbjct: 11171 ttggtaacctcagctacaatgctgttatgatccaagaccctcctggatttcataatcctg 11230

                              
Query: 342   acgatggcggcctcaat 358
             ||||| || ||||||||
Sbjct: 11231 acgatagcagcctcaat 11247



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>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1118_G04
          Length = 134464

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 158/197 (80%)
 Strand = Plus / Plus

                                                                         
Query: 162   gcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacgctcaatc 221
             ||||||||||| || | |||||||||| | ||||||||||| | ||| ||||||||||| 
Sbjct: 98345 gcaagatagcgatataacttcctatctgctttgtccctctctaagaattcacgctcaatt 98404

                                                                         
Query: 222   agggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctggagctgc 281
             || || || || | |||||| || || || || ||||||| ||| || || || |  |||
Sbjct: 98405 agagattctatgcgtttctttatgacaacaggattcggcatgaatcgggcttgcaattgc 98464

                                                                         
Query: 282   ttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcatgatcctc 341
             || |||||||| |  || |||||||| || |||| |||||||||||| ||||| ||||| 
Sbjct: 98465 ttggtaacctcagctacaatgctgttatgatccaagaccctcctggatttcataatcctg 98524

                              
Query: 342   acgatggcggcctcaat 358
             ||||| || ||||||||
Sbjct: 98525 acgatagcagcctcaat 98541



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>dbj|AK072402.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079J03, full
            insert sequence
          Length = 2535

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 158/197 (80%)
 Strand = Plus / Minus

                                                                        
Query: 162  gcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacgctcaatc 221
            ||||||||||| || | |||||||||| | ||||||||||| | ||| ||||||||||| 
Sbjct: 2304 gcaagatagcgatataacttcctatctgctttgtccctctctaagaattcacgctcaatt 2245

                                                                        
Query: 222  agggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctggagctgc 281
            || || || || | |||||| || || || || ||||||| ||| || || || |  |||
Sbjct: 2244 agagattctatgcgtttctttatgacaacaggattcggcatgaatcgggcttgcaattgc 2185

                                                                        
Query: 282  ttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcatgatcctc 341
            || |||||||| |  || |||||||| || |||| |||||||||||| ||||| ||||| 
Sbjct: 2184 ttggtaacctcagctacaatgctgttatgatccaagaccctcctggatttcataatcctg 2125

                             
Query: 342  acgatggcggcctcaat 358
            ||||| || ||||||||
Sbjct: 2124 acgatagcagcctcaat 2108



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                            
Query: 276      agctgcttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcatg 335
                |||||||| || || ||||||| |||||| |||||||||||||| || ||||||||||||
Sbjct: 41344383 agctgctttgtcacttctgtgattatgctattgtggtccaggactcttctggacttcatg 41344324

                                       
Query: 336      atcctcacgatggcggcctcaat 358
                || || || || || ||||||||
Sbjct: 41344323 attctgacaattgcagcctcaat 41344301



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>dbj|AP004031.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0432C03
          Length = 164394

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                         
Query: 276   agctgcttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcatg 335
             |||||||| || || ||||||| |||||| |||||||||||||| || ||||||||||||
Sbjct: 35876 agctgctttgtcacttctgtgattatgctattgtggtccaggactcttctggacttcatg 35817

                                    
Query: 336   atcctcacgatggcggcctcaat 358
             || || || || || ||||||||
Sbjct: 35816 attctgacaattgcagcctcaat 35794



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>ref|NM_102447.3| Arabidopsis thaliana ATCUL3/ATCUL3A/CUL3/CUL3A; protein binding /
            ubiquitin-protein ligase AT1G26830
            (ATCUL3/ATCUL3A/CUL3/CUL3A) mRNA, complete cds
          Length = 2526

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                        
Query: 261  aggaagcgtgcctggagctgcttcgtaacctctgtgactatgctgttgtggtccaggacc 320
            ||||| |||| ||| | ||| ||||| ||||| | || |||| |||||||||| || |  
Sbjct: 2259 aggaaccgtggctgcaactgtttcgtcacctcggcgattatgttgttgtggtctagtatt 2200

                                                     
Query: 321  ctcctggacttcatgatcctcacgatggcggcctcaatctg 361
             ||||||||||||||||||| |||||||| || ||||||||
Sbjct: 2199 ttcctggacttcatgatccttacgatggctgcttcaatctg 2159



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>emb|AJ344252.1|ATH344252 Arabidopsis thaliana mRNA for cullin 3a (cul3a gene)
          Length = 2544

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                        
Query: 261  aggaagcgtgcctggagctgcttcgtaacctctgtgactatgctgttgtggtccaggacc 320
            ||||| |||| ||| | ||| ||||| ||||| | || |||| |||||||||| || |  
Sbjct: 2259 aggaaccgtggctgcaactgtttcgtcacctcggcgattatgttgttgtggtctagtatt 2200

                                                     
Query: 321  ctcctggacttcatgatcctcacgatggcggcctcaatctg 361
             ||||||||||||||||||| |||||||| || ||||||||
Sbjct: 2199 ttcctggacttcatgatccttacgatggctgcttcaatctg 2159



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>emb|AJ319540.1|ATH319540 Arabidopsis thaliana partial mRNA for cullin 3a (cul3a gene)
          Length = 1204

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                       
Query: 261 aggaagcgtgcctggagctgcttcgtaacctctgtgactatgctgttgtggtccaggacc 320
           ||||| |||| ||| | ||| ||||| ||||| | || |||| |||||||||| || |  
Sbjct: 915 aggaaccgtggctgcaactgtttcgtcacctcggcgattatgttgttgtggtctagtatt 856

                                                    
Query: 321 ctcctggacttcatgatcctcacgatggcggcctcaatctg 361
            ||||||||||||||||||| |||||||| || ||||||||
Sbjct: 855 ttcctggacttcatgatccttacgatggctgcttcaatctg 815



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>gb|AC006535.7|AC006535 Genomic sequence for Arabidopsis thaliana BAC T24P13 from chromosome I,
             complete sequence
          Length = 98630

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                         
Query: 261   aggaagcgtgcctggagctgcttcgtaacctctgtgactatgctgttgtggtccaggacc 320
             ||||| |||| ||| | ||| ||||| ||||| | || |||| |||||||||| || |  
Sbjct: 98029 aggaaccgtggctgcaactgtttcgtcacctcggcgattatgttgttgtggtctagtatt 97970

                                                      
Query: 321   ctcctggacttcatgatcctcacgatggcggcctcaatctg 361
              ||||||||||||||||||| |||||||| || ||||||||
Sbjct: 97969 ttcctggacttcatgatccttacgatggctgcttcaatctg 97929



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>gb|AC005508.1|AC005508 Arabidopsis thaliana chromosome I BAC T2P11 genomic sequence,
            complete sequence
          Length = 85372

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 83/101 (82%)
 Strand = Plus / Minus

                                                                        
Query: 261  aggaagcgtgcctggagctgcttcgtaacctctgtgactatgctgttgtggtccaggacc 320
            ||||| |||| ||| | ||| ||||| ||||| | || |||| |||||||||| || |  
Sbjct: 6184 aggaaccgtggctgcaactgtttcgtcacctcggcgattatgttgttgtggtctagtatt 6125

                                                     
Query: 321  ctcctggacttcatgatcctcacgatggcggcctcaatctg 361
             ||||||||||||||||||| |||||||| || ||||||||
Sbjct: 6124 ttcctggacttcatgatccttacgatggctgcttcaatctg 6084



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>gb|AC122544.1| Genomic sequence for Lycopersicon esculentum, clone L136C6, complete
             sequence
          Length = 121637

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 73/89 (82%)
 Strand = Plus / Minus

                                                                         
Query: 195   tccctctccaggaactcacgctcaatcagggactcgatccttttcttgatcaccaccggg 254
             |||||||||| ||| |||||||||||||  ||||| || | |||||| || || || |||
Sbjct: 54980 tccctctccaagaattcacgctcaatcaaagactcaattcgtttctttatgacaactggg 54921

                                          
Query: 255   ttcggcaggaagcgtgcctggagctgctt 283
             || |||||||| || | ||| ||||||||
Sbjct: 54920 tttggcaggaatcgagactgtagctgctt 54892



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>gb|AC146568.11| Medicago truncatula clone mth2-101o18, complete sequence
          Length = 129921

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                             
Query: 320   cctcctggacttcatgatcctcacgatggcggcctcaatctggggctt 367
             |||||| || |||||||||||||| || || ||||||||||| |||||
Sbjct: 71189 cctcctagatttcatgatcctcactattgccgcctcaatctgaggctt 71236



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>ref|XM_851039.1| PREDICTED: Canis familiaris similar to Cullin-1 (CUL-1), transcript
            variant 5 (LOC475512), mRNA
          Length = 2716

 Score = 46.1 bits (23), Expect = 0.079
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 329  cttcatgatcctcacgatggcggcctcaatc 359
            ||||||||||||||||||||| |||| ||||
Sbjct: 2112 cttcatgatcctcacgatggccgcctgaatc 2082



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>ref|XM_532734.2| PREDICTED: Canis familiaris similar to Cullin-1 (CUL-1), transcript
            variant 1 (LOC475512), mRNA
          Length = 2713

 Score = 46.1 bits (23), Expect = 0.079
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 329  cttcatgatcctcacgatggcggcctcaatc 359
            ||||||||||||||||||||| |||| ||||
Sbjct: 2109 cttcatgatcctcacgatggccgcctgaatc 2079



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>ref|XM_850961.1| PREDICTED: Canis familiaris similar to Cullin-1 (CUL-1), transcript
            variant 4 (LOC475512), mRNA
          Length = 2726

 Score = 46.1 bits (23), Expect = 0.079
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 329  cttcatgatcctcacgatggcggcctcaatc 359
            ||||||||||||||||||||| |||| ||||
Sbjct: 2309 cttcatgatcctcacgatggccgcctgaatc 2279



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>ref|XM_843309.1| PREDICTED: Canis familiaris similar to Cullin-1 (CUL-1), transcript
            variant 3 (LOC475512), mRNA
          Length = 2922

 Score = 46.1 bits (23), Expect = 0.079
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 329  cttcatgatcctcacgatggcggcctcaatc 359
            ||||||||||||||||||||| |||| ||||
Sbjct: 2318 cttcatgatcctcacgatggccgcctgaatc 2288



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>ref|XM_870269.1| PREDICTED: Bos taurus similar to cullin 4A isoform 1 (LOC617935),
            mRNA
          Length = 4072

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 329  cttcatgatcctcacgatggcggcctcaatctgg 362
            |||||||||||| ||||||||||| || ||||||
Sbjct: 2013 cttcatgatcctgacgatggcggcatcgatctgg 1980



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>ref|NM_130116.2| Arabidopsis thaliana nucleotide binding AT2G45540 mRNA, complete cds
          Length = 10217

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  cgatccttttcttgatcacc 248
            ||||||||||||||||||||
Sbjct: 6464 cgatccttttcttgatcacc 6445



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>gb|AC123844.4| Mus musculus BAC clone RP23-416P14 from chromosome 7, complete sequence
          Length = 198721

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 99     atggtttttgttcattcgttcatg 122
              ||||||||||||||||| ||||||
Sbjct: 140755 atggtttttgttcattctttcatg 140778



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>gb|AC072022.19| Homo sapiens 3 BAC RP11-211G3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 125395

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 180   ttcctatctaccttgtccctctcc 203
             ||||||||||||||||| ||||||
Sbjct: 10944 ttcctatctaccttgtctctctcc 10967



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>gb|AC003680.3| Arabidopsis thaliana chromosome 2 BAC F17K2 genomic sequence, complete
             sequence
          Length = 91854

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   cgatccttttcttgatcacc 248
             ||||||||||||||||||||
Sbjct: 15438 cgatccttttcttgatcacc 15457



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>emb|AL772396.7| Zebrafish DNA sequence from clone CH211-253F14, complete sequence
          Length = 148465

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 102    gtttttgttcattcgttcat 121
              ||||||||||||||||||||
Sbjct: 136222 gtttttgttcattcgttcat 136241


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,630,244
Number of Sequences: 3902068
Number of extensions: 2630244
Number of successful extensions: 81736
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81634
Number of HSP's gapped (non-prelim): 91
length of query: 367
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 345
effective length of database: 17,147,199,772
effective search space: 5915783921340
effective search space used: 5915783921340
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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