Clone Name | rbags9m02 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_480292.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2507 Score = 200 bits (101), Expect = 2e-48 Identities = 185/213 (86%) Strand = Plus / Minus Query: 155 taattacgcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacg 214 |||||| |||||||| ||||| || ||||| ||| |||||||||||||| |||||| || Sbjct: 2412 taattatgcaagataccggtacagtttcctgtctgtcttgtccctctccaagaactcgcg 2353 Query: 215 ctcaatcagggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctg 274 ||||||||| ||||||| || |||||||||||||| |||||||||| ||| || | ||| Sbjct: 2352 ctcaatcagagactcgactctcttcttgatcaccacagggttcggcatgaaacgaggctg 2293 Query: 275 gagctgcttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcat 334 ||||||||||| |||||||| |||||||||||||| ||||| || ||||| |||||||| Sbjct: 2292 cagctgcttcgtcacctctgtcactatgctgttgtgatccagcactctcctcgacttcat 2233 Query: 335 gatcctcacgatggcggcctcaatctggggctt 367 ||||||||||||||| ||||| ||||| ||||| Sbjct: 2232 gatcctcacgatggccgcctcgatctgaggctt 2200
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 200 bits (101), Expect = 2e-48 Identities = 185/213 (86%) Strand = Plus / Plus Query: 155 taattacgcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacg 214 |||||| |||||||| ||||| || ||||| ||| |||||||||||||| |||||| || Sbjct: 4147167 taattatgcaagataccggtacagtttcctgtctgtcttgtccctctccaagaactcgcg 4147226 Query: 215 ctcaatcagggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctg 274 ||||||||| ||||||| || |||||||||||||| |||||||||| ||| || | ||| Sbjct: 4147227 ctcaatcagagactcgactctcttcttgatcaccacagggttcggcatgaaacgaggctg 4147286 Query: 275 gagctgcttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcat 334 ||||||||||| |||||||| |||||||||||||| ||||| || ||||| |||||||| Sbjct: 4147287 cagctgcttcgtcacctctgtcactatgctgttgtgatccagcactctcctcgacttcat 4147346 Query: 335 gatcctcacgatggcggcctcaatctggggctt 367 ||||||||||||||| ||||| ||||| ||||| Sbjct: 4147347 gatcctcacgatggccgcctcgatctgaggctt 4147379
>dbj|AP005606.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1590_E05 Length = 148205 Score = 200 bits (101), Expect = 2e-48 Identities = 185/213 (86%) Strand = Plus / Plus Query: 155 taattacgcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacg 214 |||||| |||||||| ||||| || ||||| ||| |||||||||||||| |||||| || Sbjct: 46790 taattatgcaagataccggtacagtttcctgtctgtcttgtccctctccaagaactcgcg 46849 Query: 215 ctcaatcagggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctg 274 ||||||||| ||||||| || |||||||||||||| |||||||||| ||| || | ||| Sbjct: 46850 ctcaatcagagactcgactctcttcttgatcaccacagggttcggcatgaaacgaggctg 46909 Query: 275 gagctgcttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcat 334 ||||||||||| |||||||| |||||||||||||| ||||| || ||||| |||||||| Sbjct: 46910 cagctgcttcgtcacctctgtcactatgctgttgtgatccagcactctcctcgacttcat 46969 Query: 335 gatcctcacgatggcggcctcaatctggggctt 367 ||||||||||||||| ||||| ||||| ||||| Sbjct: 46970 gatcctcacgatggccgcctcgatctgaggctt 47002
>dbj|AP005501.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0458D06 Length = 166038 Score = 200 bits (101), Expect = 2e-48 Identities = 185/213 (86%) Strand = Plus / Plus Query: 155 taattacgcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacg 214 |||||| |||||||| ||||| || ||||| ||| |||||||||||||| |||||| || Sbjct: 140280 taattatgcaagataccggtacagtttcctgtctgtcttgtccctctccaagaactcgcg 140339 Query: 215 ctcaatcagggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctg 274 ||||||||| ||||||| || |||||||||||||| |||||||||| ||| || | ||| Sbjct: 140340 ctcaatcagagactcgactctcttcttgatcaccacagggttcggcatgaaacgaggctg 140399 Query: 275 gagctgcttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcat 334 ||||||||||| |||||||| |||||||||||||| ||||| || ||||| |||||||| Sbjct: 140400 cagctgcttcgtcacctctgtcactatgctgttgtgatccagcactctcctcgacttcat 140459 Query: 335 gatcctcacgatggcggcctcaatctggggctt 367 ||||||||||||||| ||||| ||||| ||||| Sbjct: 140460 gatcctcacgatggccgcctcgatctgaggctt 140492
>dbj|AK066234.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013058A05, full insert sequence Length = 2506 Score = 200 bits (101), Expect = 2e-48 Identities = 185/213 (86%) Strand = Plus / Minus Query: 155 taattacgcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacg 214 |||||| |||||||| ||||| || ||||| ||| |||||||||||||| |||||| || Sbjct: 2411 taattatgcaagataccggtacagtttcctgtctgtcttgtccctctccaagaactcgcg 2352 Query: 215 ctcaatcagggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctg 274 ||||||||| ||||||| || |||||||||||||| |||||||||| ||| || | ||| Sbjct: 2351 ctcaatcagagactcgactctcttcttgatcaccacagggttcggcatgaaacgaggctg 2292 Query: 275 gagctgcttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcat 334 ||||||||||| |||||||| |||||||||||||| ||||| || ||||| |||||||| Sbjct: 2291 cagctgcttcgtcacctctgtcactatgctgttgtgatccagcactctcctcgacttcat 2232 Query: 335 gatcctcacgatggcggcctcaatctggggctt 367 ||||||||||||||| ||||| ||||| ||||| Sbjct: 2231 gatcctcacgatggccgcctcgatctgaggctt 2199
>dbj|AK061805.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-A02, full insert sequence Length = 1078 Score = 200 bits (101), Expect = 2e-48 Identities = 185/213 (86%) Strand = Plus / Minus Query: 155 taattacgcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacg 214 |||||| |||||||| ||||| || ||||| ||| |||||||||||||| |||||| || Sbjct: 983 taattatgcaagataccggtacagtttcctgtctgtcttgtccctctccaagaactcgcg 924 Query: 215 ctcaatcagggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctg 274 ||||||||| ||||||| || |||||||||||||| |||||||||| ||| || | ||| Sbjct: 923 ctcaatcagagactcgactctcttcttgatcaccacagggttcggcatgaaacgaggctg 864 Query: 275 gagctgcttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcat 334 ||||||||||| |||||||| |||||||||||||| ||||| || ||||| |||||||| Sbjct: 863 cagctgcttcgtcacctctgtcactatgctgttgtgatccagcactctcctcgacttcat 804 Query: 335 gatcctcacgatggcggcctcaatctggggctt 367 ||||||||||||||| ||||| ||||| ||||| Sbjct: 803 gatcctcacgatggccgcctcgatctgaggctt 771
>gb|AY111946.1| Zea mays CL296_1 mRNA sequence Length = 1397 Score = 163 bits (82), Expect = 5e-37 Identities = 175/206 (84%) Strand = Plus / Minus Query: 162 gcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacgctcaatc 221 |||||||||||||| | |||||| || |||||||||| |||||||||||| ||||| || Sbjct: 1107 gcaagatagcggtacatcttcctgtccaccttgtcccgctccaggaactcgcgctcgatg 1048 Query: 222 agggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctggagctgc 281 || |||||||||| |||||||||||||| ||||| |||| ||| || | ||| | |||| Sbjct: 1047 agcgactcgatccgcttcttgatcaccacggggtttggcatgaaacggggctgcaactgc 988 Query: 282 ttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcatgatcctc 341 || || ||||| || | ||||||||||||||| || |||||||| ||||||||||||| | Sbjct: 987 tttgtcacctccgtcattatgctgttgtggtcgagaaccctccttgacttcatgatccgc 928 Query: 342 acgatggcggcctcaatctggggctt 367 |||||||| ||||| ||||| ||||| Sbjct: 927 acgatggccgcctcgatctgtggctt 902
>ref|XM_474079.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2196 Score = 129 bits (65), Expect = 7e-27 Identities = 164/197 (83%) Strand = Plus / Minus Query: 162 gcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacgctcaatc 221 |||||||| ||||| | |||||||||||||||||||||||||| |||||| | ||| ||| Sbjct: 2192 gcaagataacggtacatcttcctatctaccttgtccctctccaagaactccctctcgatc 2133 Query: 222 agggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctggagctgc 281 |||||||| || |||||||| ||||| || || || |||| ||||| | || |||||| Sbjct: 2132 agggactctattcttttctttatcacaacaggatttggcaaaaagcgcgattgaagctgc 2073 Query: 282 ttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcatgatcctc 341 || || ||||| |||| |||||| |||||||||| ||| || |||||||||||||| || Sbjct: 2072 tttgtcacctccgtgattatgctattgtggtccaagactcttctggacttcatgattctg 2013 Query: 342 acgatggcggcctcaat 358 || || || |||||||| Sbjct: 2012 acaattgcagcctcaat 1996
>emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18, complete sequence Length = 150416 Score = 129 bits (65), Expect = 7e-27 Identities = 164/197 (83%) Strand = Plus / Minus Query: 162 gcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacgctcaatc 221 |||||||| ||||| | |||||||||||||||||||||||||| |||||| | ||| ||| Sbjct: 123891 gcaagataacggtacatcttcctatctaccttgtccctctccaagaactccctctcgatc 123832 Query: 222 agggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctggagctgc 281 |||||||| || |||||||| ||||| || || || |||| ||||| | || |||||| Sbjct: 123831 agggactctattcttttctttatcacaacaggatttggcaaaaagcgcgattgaagctgc 123772 Query: 282 ttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcatgatcctc 341 || || ||||| |||| |||||| |||||||||| ||| || |||||||||||||| || Sbjct: 123771 tttgtcacctccgtgattatgctattgtggtccaagactcttctggacttcatgattctg 123712 Query: 342 acgatggcggcctcaat 358 || || || |||||||| Sbjct: 123711 acaattgcagcctcaat 123695
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 129 bits (65), Expect = 7e-27 Identities = 164/197 (83%) Strand = Plus / Minus Query: 162 gcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacgctcaatc 221 |||||||| ||||| | |||||||||||||||||||||||||| |||||| | ||| ||| Sbjct: 32764458 gcaagataacggtacatcttcctatctaccttgtccctctccaagaactccctctcgatc 32764399 Query: 222 agggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctggagctgc 281 |||||||| || |||||||| ||||| || || || |||| ||||| | || |||||| Sbjct: 32764398 agggactctattcttttctttatcacaacaggatttggcaaaaagcgcgattgaagctgc 32764339 Query: 282 ttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcatgatcctc 341 || || ||||| |||| |||||| |||||||||| ||| || |||||||||||||| || Sbjct: 32764338 tttgtcacctccgtgattatgctattgtggtccaagactcttctggacttcatgattctg 32764279 Query: 342 acgatggcggcctcaat 358 || || || |||||||| Sbjct: 32764278 acaattgcagcctcaat 32764262
>emb|AL732332.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F03, complete sequence Length = 91539 Score = 129 bits (65), Expect = 7e-27 Identities = 164/197 (83%) Strand = Plus / Minus Query: 162 gcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacgctcaatc 221 |||||||| ||||| | |||||||||||||||||||||||||| |||||| | ||| ||| Sbjct: 34708 gcaagataacggtacatcttcctatctaccttgtccctctccaagaactccctctcgatc 34649 Query: 222 agggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctggagctgc 281 |||||||| || |||||||| ||||| || || || |||| ||||| | || |||||| Sbjct: 34648 agggactctattcttttctttatcacaacaggatttggcaaaaagcgcgattgaagctgc 34589 Query: 282 ttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcatgatcctc 341 || || ||||| |||| |||||| |||||||||| ||| || |||||||||||||| || Sbjct: 34588 tttgtcacctccgtgattatgctattgtggtccaagactcttctggacttcatgattctg 34529 Query: 342 acgatggcggcctcaat 358 || || || |||||||| Sbjct: 34528 acaattgcagcctcaat 34512
>emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G05, complete sequence Length = 142556 Score = 129 bits (65), Expect = 7e-27 Identities = 164/197 (83%) Strand = Plus / Minus Query: 162 gcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacgctcaatc 221 |||||||| ||||| | |||||||||||||||||||||||||| |||||| | ||| ||| Sbjct: 26748 gcaagataacggtacatcttcctatctaccttgtccctctccaagaactccctctcgatc 26689 Query: 222 agggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctggagctgc 281 |||||||| || |||||||| ||||| || || || |||| ||||| | || |||||| Sbjct: 26688 agggactctattcttttctttatcacaacaggatttggcaaaaagcgcgattgaagctgc 26629 Query: 282 ttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcatgatcctc 341 || || ||||| |||| |||||| |||||||||| ||| || |||||||||||||| || Sbjct: 26628 tttgtcacctccgtgattatgctattgtggtccaagactcttctggacttcatgattctg 26569 Query: 342 acgatggcggcctcaat 358 || || || |||||||| Sbjct: 26568 acaattgcagcctcaat 26552
>dbj|AK069061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008J21, full insert sequence Length = 2584 Score = 121 bits (61), Expect = 2e-24 Identities = 163/197 (82%) Strand = Plus / Minus Query: 162 gcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacgctcaatc 221 |||||||| ||||| | |||||||||||||||||||||||||| |||||| | ||| ||| Sbjct: 2370 gcaagataacggtacatcttcctatctaccttgtccctctccaagaactccctctcgatc 2311 Query: 222 agggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctggagctgc 281 |||||||| || |||||||| ||||| || || || |||| ||||| | || |||||| Sbjct: 2310 agggactctattcttttctttatcacaacaggatttggcaaaaagcgcgattgaagctgc 2251 Query: 282 ttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcatgatcctc 341 || || ||||| |||| || ||| |||||||||| ||| || |||||||||||||| || Sbjct: 2250 tttgtcacctccgtgattacgctattgtggtccaagactcttctggacttcatgattctg 2191 Query: 342 acgatggcggcctcaat 358 || || || |||||||| Sbjct: 2190 acaattgcagcctcaat 2174
>ref|XM_467770.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2534 Score = 81.8 bits (41), Expect = 1e-12 Identities = 158/197 (80%) Strand = Plus / Minus Query: 162 gcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacgctcaatc 221 ||||||||||| || | |||||||||| | ||||||||||| | ||| ||||||||||| Sbjct: 2304 gcaagatagcgatataacttcctatctgctttgtccctctctaagaattcacgctcaatt 2245 Query: 222 agggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctggagctgc 281 || || || || | |||||| || || || || ||||||| ||| || || || | ||| Sbjct: 2244 agagattctatgcgtttctttatgacaacaggattcggcatgaatcgggcttgcaattgc 2185 Query: 282 ttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcatgatcctc 341 || |||||||| | || |||||||| || |||| |||||||||||| ||||| ||||| Sbjct: 2184 ttggtaacctcagctacaatgctgttatgatccaagaccctcctggatttcataatcctg 2125 Query: 342 acgatggcggcctcaat 358 ||||| || |||||||| Sbjct: 2124 acgatagcagcctcaat 2108
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 81.8 bits (41), Expect = 1e-12 Identities = 158/197 (80%) Strand = Plus / Plus Query: 162 gcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacgctcaatc 221 ||||||||||| || | |||||||||| | ||||||||||| | ||| ||||||||||| Sbjct: 31328477 gcaagatagcgatataacttcctatctgctttgtccctctctaagaattcacgctcaatt 31328536 Query: 222 agggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctggagctgc 281 || || || || | |||||| || || || || ||||||| ||| || || || | ||| Sbjct: 31328537 agagattctatgcgtttctttatgacaacaggattcggcatgaatcgggcttgcaattgc 31328596 Query: 282 ttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcatgatcctc 341 || |||||||| | || |||||||| || |||| |||||||||||| ||||| ||||| Sbjct: 31328597 ttggtaacctcagctacaatgctgttatgatccaagaccctcctggatttcataatcctg 31328656 Query: 342 acgatggcggcctcaat 358 ||||| || |||||||| Sbjct: 31328657 acgatagcagcctcaat 31328673
>dbj|AP005733.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0024K03 Length = 119796 Score = 81.8 bits (41), Expect = 1e-12 Identities = 158/197 (80%) Strand = Plus / Plus Query: 162 gcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacgctcaatc 221 ||||||||||| || | |||||||||| | ||||||||||| | ||| ||||||||||| Sbjct: 11051 gcaagatagcgatataacttcctatctgctttgtccctctctaagaattcacgctcaatt 11110 Query: 222 agggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctggagctgc 281 || || || || | |||||| || || || || ||||||| ||| || || || | ||| Sbjct: 11111 agagattctatgcgtttctttatgacaacaggattcggcatgaatcgggcttgcaattgc 11170 Query: 282 ttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcatgatcctc 341 || |||||||| | || |||||||| || |||| |||||||||||| ||||| ||||| Sbjct: 11171 ttggtaacctcagctacaatgctgttatgatccaagaccctcctggatttcataatcctg 11230 Query: 342 acgatggcggcctcaat 358 ||||| || |||||||| Sbjct: 11231 acgatagcagcctcaat 11247
>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1118_G04 Length = 134464 Score = 81.8 bits (41), Expect = 1e-12 Identities = 158/197 (80%) Strand = Plus / Plus Query: 162 gcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacgctcaatc 221 ||||||||||| || | |||||||||| | ||||||||||| | ||| ||||||||||| Sbjct: 98345 gcaagatagcgatataacttcctatctgctttgtccctctctaagaattcacgctcaatt 98404 Query: 222 agggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctggagctgc 281 || || || || | |||||| || || || || ||||||| ||| || || || | ||| Sbjct: 98405 agagattctatgcgtttctttatgacaacaggattcggcatgaatcgggcttgcaattgc 98464 Query: 282 ttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcatgatcctc 341 || |||||||| | || |||||||| || |||| |||||||||||| ||||| ||||| Sbjct: 98465 ttggtaacctcagctacaatgctgttatgatccaagaccctcctggatttcataatcctg 98524 Query: 342 acgatggcggcctcaat 358 ||||| || |||||||| Sbjct: 98525 acgatagcagcctcaat 98541
>dbj|AK072402.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079J03, full insert sequence Length = 2535 Score = 81.8 bits (41), Expect = 1e-12 Identities = 158/197 (80%) Strand = Plus / Minus Query: 162 gcaagatagcggtagagcttcctatctaccttgtccctctccaggaactcacgctcaatc 221 ||||||||||| || | |||||||||| | ||||||||||| | ||| ||||||||||| Sbjct: 2304 gcaagatagcgatataacttcctatctgctttgtccctctctaagaattcacgctcaatt 2245 Query: 222 agggactcgatccttttcttgatcaccaccgggttcggcaggaagcgtgcctggagctgc 281 || || || || | |||||| || || || || ||||||| ||| || || || | ||| Sbjct: 2244 agagattctatgcgtttctttatgacaacaggattcggcatgaatcgggcttgcaattgc 2185 Query: 282 ttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcatgatcctc 341 || |||||||| | || |||||||| || |||| |||||||||||| ||||| ||||| Sbjct: 2184 ttggtaacctcagctacaatgctgttatgatccaagaccctcctggatttcataatcctg 2125 Query: 342 acgatggcggcctcaat 358 ||||| || |||||||| Sbjct: 2124 acgatagcagcctcaat 2108
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 69.9 bits (35), Expect = 5e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 276 agctgcttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcatg 335 |||||||| || || ||||||| |||||| |||||||||||||| || |||||||||||| Sbjct: 41344383 agctgctttgtcacttctgtgattatgctattgtggtccaggactcttctggacttcatg 41344324 Query: 336 atcctcacgatggcggcctcaat 358 || || || || || |||||||| Sbjct: 41344323 attctgacaattgcagcctcaat 41344301
>dbj|AP004031.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0432C03 Length = 164394 Score = 69.9 bits (35), Expect = 5e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 276 agctgcttcgtaacctctgtgactatgctgttgtggtccaggaccctcctggacttcatg 335 |||||||| || || ||||||| |||||| |||||||||||||| || |||||||||||| Sbjct: 35876 agctgctttgtcacttctgtgattatgctattgtggtccaggactcttctggacttcatg 35817 Query: 336 atcctcacgatggcggcctcaat 358 || || || || || |||||||| Sbjct: 35816 attctgacaattgcagcctcaat 35794
>ref|NM_102447.3| Arabidopsis thaliana ATCUL3/ATCUL3A/CUL3/CUL3A; protein binding / ubiquitin-protein ligase AT1G26830 (ATCUL3/ATCUL3A/CUL3/CUL3A) mRNA, complete cds Length = 2526 Score = 58.0 bits (29), Expect = 2e-05 Identities = 83/101 (82%) Strand = Plus / Minus Query: 261 aggaagcgtgcctggagctgcttcgtaacctctgtgactatgctgttgtggtccaggacc 320 ||||| |||| ||| | ||| ||||| ||||| | || |||| |||||||||| || | Sbjct: 2259 aggaaccgtggctgcaactgtttcgtcacctcggcgattatgttgttgtggtctagtatt 2200 Query: 321 ctcctggacttcatgatcctcacgatggcggcctcaatctg 361 ||||||||||||||||||| |||||||| || |||||||| Sbjct: 2199 ttcctggacttcatgatccttacgatggctgcttcaatctg 2159
>emb|AJ344252.1|ATH344252 Arabidopsis thaliana mRNA for cullin 3a (cul3a gene) Length = 2544 Score = 58.0 bits (29), Expect = 2e-05 Identities = 83/101 (82%) Strand = Plus / Minus Query: 261 aggaagcgtgcctggagctgcttcgtaacctctgtgactatgctgttgtggtccaggacc 320 ||||| |||| ||| | ||| ||||| ||||| | || |||| |||||||||| || | Sbjct: 2259 aggaaccgtggctgcaactgtttcgtcacctcggcgattatgttgttgtggtctagtatt 2200 Query: 321 ctcctggacttcatgatcctcacgatggcggcctcaatctg 361 ||||||||||||||||||| |||||||| || |||||||| Sbjct: 2199 ttcctggacttcatgatccttacgatggctgcttcaatctg 2159
>emb|AJ319540.1|ATH319540 Arabidopsis thaliana partial mRNA for cullin 3a (cul3a gene) Length = 1204 Score = 58.0 bits (29), Expect = 2e-05 Identities = 83/101 (82%) Strand = Plus / Minus Query: 261 aggaagcgtgcctggagctgcttcgtaacctctgtgactatgctgttgtggtccaggacc 320 ||||| |||| ||| | ||| ||||| ||||| | || |||| |||||||||| || | Sbjct: 915 aggaaccgtggctgcaactgtttcgtcacctcggcgattatgttgttgtggtctagtatt 856 Query: 321 ctcctggacttcatgatcctcacgatggcggcctcaatctg 361 ||||||||||||||||||| |||||||| || |||||||| Sbjct: 855 ttcctggacttcatgatccttacgatggctgcttcaatctg 815
>gb|AC006535.7|AC006535 Genomic sequence for Arabidopsis thaliana BAC T24P13 from chromosome I, complete sequence Length = 98630 Score = 58.0 bits (29), Expect = 2e-05 Identities = 83/101 (82%) Strand = Plus / Minus Query: 261 aggaagcgtgcctggagctgcttcgtaacctctgtgactatgctgttgtggtccaggacc 320 ||||| |||| ||| | ||| ||||| ||||| | || |||| |||||||||| || | Sbjct: 98029 aggaaccgtggctgcaactgtttcgtcacctcggcgattatgttgttgtggtctagtatt 97970 Query: 321 ctcctggacttcatgatcctcacgatggcggcctcaatctg 361 ||||||||||||||||||| |||||||| || |||||||| Sbjct: 97969 ttcctggacttcatgatccttacgatggctgcttcaatctg 97929
>gb|AC005508.1|AC005508 Arabidopsis thaliana chromosome I BAC T2P11 genomic sequence, complete sequence Length = 85372 Score = 58.0 bits (29), Expect = 2e-05 Identities = 83/101 (82%) Strand = Plus / Minus Query: 261 aggaagcgtgcctggagctgcttcgtaacctctgtgactatgctgttgtggtccaggacc 320 ||||| |||| ||| | ||| ||||| ||||| | || |||| |||||||||| || | Sbjct: 6184 aggaaccgtggctgcaactgtttcgtcacctcggcgattatgttgttgtggtctagtatt 6125 Query: 321 ctcctggacttcatgatcctcacgatggcggcctcaatctg 361 ||||||||||||||||||| |||||||| || |||||||| Sbjct: 6124 ttcctggacttcatgatccttacgatggctgcttcaatctg 6084
>gb|AC122544.1| Genomic sequence for Lycopersicon esculentum, clone L136C6, complete sequence Length = 121637 Score = 50.1 bits (25), Expect = 0.005 Identities = 73/89 (82%) Strand = Plus / Minus Query: 195 tccctctccaggaactcacgctcaatcagggactcgatccttttcttgatcaccaccggg 254 |||||||||| ||| ||||||||||||| ||||| || | |||||| || || || ||| Sbjct: 54980 tccctctccaagaattcacgctcaatcaaagactcaattcgtttctttatgacaactggg 54921 Query: 255 ttcggcaggaagcgtgcctggagctgctt 283 || |||||||| || | ||| |||||||| Sbjct: 54920 tttggcaggaatcgagactgtagctgctt 54892
>gb|AC146568.11| Medicago truncatula clone mth2-101o18, complete sequence Length = 129921 Score = 48.1 bits (24), Expect = 0.020 Identities = 42/48 (87%) Strand = Plus / Plus Query: 320 cctcctggacttcatgatcctcacgatggcggcctcaatctggggctt 367 |||||| || |||||||||||||| || || ||||||||||| ||||| Sbjct: 71189 cctcctagatttcatgatcctcactattgccgcctcaatctgaggctt 71236
>ref|XM_851039.1| PREDICTED: Canis familiaris similar to Cullin-1 (CUL-1), transcript variant 5 (LOC475512), mRNA Length = 2716 Score = 46.1 bits (23), Expect = 0.079 Identities = 29/31 (93%) Strand = Plus / Minus Query: 329 cttcatgatcctcacgatggcggcctcaatc 359 ||||||||||||||||||||| |||| |||| Sbjct: 2112 cttcatgatcctcacgatggccgcctgaatc 2082
>ref|XM_532734.2| PREDICTED: Canis familiaris similar to Cullin-1 (CUL-1), transcript variant 1 (LOC475512), mRNA Length = 2713 Score = 46.1 bits (23), Expect = 0.079 Identities = 29/31 (93%) Strand = Plus / Minus Query: 329 cttcatgatcctcacgatggcggcctcaatc 359 ||||||||||||||||||||| |||| |||| Sbjct: 2109 cttcatgatcctcacgatggccgcctgaatc 2079
>ref|XM_850961.1| PREDICTED: Canis familiaris similar to Cullin-1 (CUL-1), transcript variant 4 (LOC475512), mRNA Length = 2726 Score = 46.1 bits (23), Expect = 0.079 Identities = 29/31 (93%) Strand = Plus / Minus Query: 329 cttcatgatcctcacgatggcggcctcaatc 359 ||||||||||||||||||||| |||| |||| Sbjct: 2309 cttcatgatcctcacgatggccgcctgaatc 2279
>ref|XM_843309.1| PREDICTED: Canis familiaris similar to Cullin-1 (CUL-1), transcript variant 3 (LOC475512), mRNA Length = 2922 Score = 46.1 bits (23), Expect = 0.079 Identities = 29/31 (93%) Strand = Plus / Minus Query: 329 cttcatgatcctcacgatggcggcctcaatc 359 ||||||||||||||||||||| |||| |||| Sbjct: 2318 cttcatgatcctcacgatggccgcctgaatc 2288
>ref|XM_870269.1| PREDICTED: Bos taurus similar to cullin 4A isoform 1 (LOC617935), mRNA Length = 4072 Score = 44.1 bits (22), Expect = 0.31 Identities = 31/34 (91%) Strand = Plus / Minus Query: 329 cttcatgatcctcacgatggcggcctcaatctgg 362 |||||||||||| ||||||||||| || |||||| Sbjct: 2013 cttcatgatcctgacgatggcggcatcgatctgg 1980
>ref|NM_130116.2| Arabidopsis thaliana nucleotide binding AT2G45540 mRNA, complete cds Length = 10217 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 cgatccttttcttgatcacc 248 |||||||||||||||||||| Sbjct: 6464 cgatccttttcttgatcacc 6445
>gb|AC123844.4| Mus musculus BAC clone RP23-416P14 from chromosome 7, complete sequence Length = 198721 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 atggtttttgttcattcgttcatg 122 ||||||||||||||||| |||||| Sbjct: 140755 atggtttttgttcattctttcatg 140778
>gb|AC072022.19| Homo sapiens 3 BAC RP11-211G3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 125395 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 180 ttcctatctaccttgtccctctcc 203 ||||||||||||||||| |||||| Sbjct: 10944 ttcctatctaccttgtctctctcc 10967
>gb|AC003680.3| Arabidopsis thaliana chromosome 2 BAC F17K2 genomic sequence, complete sequence Length = 91854 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 cgatccttttcttgatcacc 248 |||||||||||||||||||| Sbjct: 15438 cgatccttttcttgatcacc 15457
>emb|AL772396.7| Zebrafish DNA sequence from clone CH211-253F14, complete sequence Length = 148465 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 gtttttgttcattcgttcat 121 |||||||||||||||||||| Sbjct: 136222 gtttttgttcattcgttcat 136241 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,630,244 Number of Sequences: 3902068 Number of extensions: 2630244 Number of successful extensions: 81736 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81634 Number of HSP's gapped (non-prelim): 91 length of query: 367 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 345 effective length of database: 17,147,199,772 effective search space: 5915783921340 effective search space used: 5915783921340 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)