ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9l24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL031656.10|HS232N11 Human DNA sequence from clone RP1-232N1... 44 0.53
2emb|AL670951.6| Mouse DNA sequence from clone RP23-6N18 on chrom... 44 0.53
3gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
4gb|AC124055.6| Homo sapiens chromosome 11, clone RP4-608B4, comp... 42 2.1
5emb|BX537106.6| Zebrafish DNA sequence from clone DKEY-98P3 in l... 42 2.1
6emb|AJ006345.1|HSA6345 Homo sapiens KVLQT1 gene 42 2.1
7gb|AC021424.6| Homo sapiens chromosome 11, clone RP11-38L8, comp... 42 2.1
8gb|AC157774.5| Mus musculus chromosome 8, clone RP23-423E20, com... 42 2.1
9dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
10emb|BX005104.7| Zebrafish DNA sequence from clone DKEY-191D13 in... 42 2.1
11gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
12gb|AC002403.1|AC002403 Human Chromosome 11p15.5 pac pDJ608b4, co... 42 2.1
13gb|U90095.1|U90095 Human Chromosome 11p15.5 pac pDJ74k15, comple... 42 2.1
14emb|AL928701.7| Zebrafish DNA sequence from clone CH211-201H21, ... 42 2.1
15emb|AL808141.8| Zebrafish DNA sequence from clone CH211-260N19, ... 42 2.1
16gb|AC167132.12| Mus musculus chromosome 8, clone RP24-335A22, co... 42 2.1
17gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 8.3
18gb|AC116798.11| Mus musculus chromosome 1, clone RP24-329K22, co... 40 8.3
19gb|AC084296.12| Oryza sativa chromosome 3 BAC OSJNBb0024J04 geno... 40 8.3
20gb|AC131191.4| Mus musculus BAC clone RP24-464B16 from chromosom... 40 8.3
21gb|AC138109.3| Mus musculus BAC clone RP24-444I15 from chromosom... 40 8.3
22gb|AC130714.3| Mus musculus BAC clone RP23-367L18 from chromosom... 40 8.3
23gb|AC156556.8| Mus musculus chromosome 7, clone RP23-92E8, compl... 40 8.3
24gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.3
25ref|XM_975010.1| PREDICTED: Mus musculus hypothetical protein LO... 40 8.3
26ref|XM_974871.1| PREDICTED: Mus musculus hypothetical protein LO... 40 8.3
27ref|XM_973576.1| PREDICTED: Mus musculus hypothetical protein LO... 40 8.3
28emb|CT025601.7| Mouse DNA sequence from clone RP23-424B7 on chro... 40 8.3
29gb|AC116470.12| Mus musculus chromosome 16, clone RP23-383N18, c... 40 8.3
30ref|XM_569412.1| Cryptococcus neoformans var. neoformans JEC21 l... 40 8.3
31gb|AC125400.4| Mus musculus BAC clone RP24-380E10 from chromosom... 40 8.3
32gb|AC138619.4| Mus musculus BAC clone RP23-278M16 from chromosom... 40 8.3
33gb|AC123943.4| Mus musculus BAC clone RP23-480G20 from chromosom... 40 8.3
34gb|AC133889.9| Mus musculus chromosome 16, clone RP23-380I13, co... 40 8.3
35ref|XM_758556.1| Theileria parva strain Muguga chromosome 4 hypo... 40 8.3
36gb|AC113019.13| Mus musculus chromosome 7, clone RP23-185A21, co... 40 8.3
37emb|AL390035.10| Human DNA sequence from clone RP13-9D14 on chro... 40 8.3
38emb|AL390866.14| Human DNA sequence from clone RP11-218D6 on chr... 40 8.3
39gb|AY043452.1| Helicobacter pylori adhesin-binding fucosylated h... 40 8.3
40gb|AY113682.1| Equus caballus ribosomal protein L5 (RPL5) mRNA, ... 40 8.3
41tpg|BK002895.1| TPA: TPA_inf: Drosophila melanogaster HDC16125 (... 40 8.3
42dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001 40 8.3
43gb|AC108004.3| Homo sapiens chromosome 17, clone CTD-2348K1, com... 40 8.3
44gb|AC096739.3| Homo sapiens BAC clone RP11-213G21 from 4, comple... 40 8.3
45dbj|AK148940.1| Mus musculus 2 days neonate sympathetic ganglion... 40 8.3
46dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
47dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
48gb|AC007854.4|AC007854 Drosophila melanogaster, chromosome 3R, r... 40 8.3
49gb|AC092967.5| Homo sapiens 3 BAC RP11-521A24 (Roswell Park Canc... 40 8.3
50emb|AL732612.28| Mouse DNA sequence from clone RP23-31L20 on chr... 40 8.3
51emb|AL845360.10| Mouse DNA sequence from clone RP23-421L7 on chr... 40 8.3
52dbj|AP000412.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 8.3
53emb|AJ338005.1|HSA338005 Homo sapiens genomic sequence surroundi... 40 8.3
54gb|AC154739.2| Mus musculus BAC clone RP23-117B4 from 9, complet... 40 8.3
55gb|AC154630.2| Mus musculus BAC clone RP23-319C8 from 9, complet... 40 8.3
56gb|AC155288.3| Mus musculus 6 BAC RP24-176C17 (Roswell Park Canc... 40 8.3
57gb|AE003767.2| Drosophila melanogaster chromosome 3R, section 10... 40 8.3
58gb|AC074042.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 8.3
59emb|AL831756.8| Mouse DNA sequence from clone RP23-300P20 on chr... 40 8.3
60emb|AL731591.3|OSJN00240 Oryza sativa genomic DNA, chromosome 4,... 40 8.3 
>emb|AL031656.10|HS232N11 Human DNA sequence from clone RP1-232N11 on chromosome 20q12-13.2
             Contains part of the PTPRT gene for protein tyrosine
             phosphatase receptor type T and a novel gene, complete
             sequence
          Length = 111641

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 406   cctccatcatttctttcctcaa 427
             ||||||||||||||||||||||
Sbjct: 71679 cctccatcatttctttcctcaa 71658
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>emb|AL670951.6| Mouse DNA sequence from clone RP23-6N18 on chromosome 2, complete
             sequence
          Length = 207571

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 244   accagaagcttccttcttccat 265
             ||||||||||||||||||||||
Sbjct: 18688 accagaagcttccttcttccat 18667
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>gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0011J22 map R10571S, complete sequence
          Length = 154441

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 202   ccacaaaataacattcagagt 222
             |||||||||||||||||||||
Sbjct: 85791 ccacaaaataacattcagagt 85811
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>gb|AC124055.6| Homo sapiens chromosome 11, clone RP4-608B4, complete sequence
          Length = 133815

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 151   tccatccaaatgaattgtcca 171
             |||||||||||||||||||||
Sbjct: 50105 tccatccaaatgaattgtcca 50085
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>emb|BX537106.6| Zebrafish DNA sequence from clone DKEY-98P3 in linkage group 20 Contains
              the gene for a novel protein similar to vertebrate
              dermatopontin (DPT), the atp1b1a gene for ATPase, Na+/K+
              transporting, beta 1a polypeptide, the gene for a novel
              protein containing a homocysteine S-methyltransferase
              domain, the bivm gene for basic, immunoglobulin-like
              variable motif containing, the 5' end of the gene for a
              novel zinc finger protein (wu:fc06h02), the ndpkz4 gene for
              nucleoside diphosphate kinase-Z4 and the gene for a novel
              protein containing an inosine-uridine preferring nucleoside
              hydrolase doamin, complete sequence
          Length = 162005

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 195    atgcatcccacaaaataacat 215
              |||||||||||||||||||||
Sbjct: 115020 atgcatcccacaaaataacat 115040
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>emb|AJ006345.1|HSA6345 Homo sapiens KVLQT1 gene
          Length = 404123

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 151    tccatccaaatgaattgtcca 171
              |||||||||||||||||||||
Sbjct: 203820 tccatccaaatgaattgtcca 203840
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>gb|AC021424.6| Homo sapiens chromosome 11, clone RP11-38L8, complete sequence
          Length = 181025

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 151    tccatccaaatgaattgtcca 171
              |||||||||||||||||||||
Sbjct: 179116 tccatccaaatgaattgtcca 179096
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>gb|AC157774.5| Mus musculus chromosome 8, clone RP23-423E20, complete sequence
          Length = 198967

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 246   cagaagcttccttcttccatt 266
             |||||||||||||||||||||
Sbjct: 19215 cagaagcttccttcttccatt 19235
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 202     ccacaaaataacattcagagt 222
               |||||||||||||||||||||
Sbjct: 3229194 ccacaaaataacattcagagt 3229174
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>emb|BX005104.7| Zebrafish DNA sequence from clone DKEY-191D13 in linkage group 6,
              complete sequence
          Length = 152217

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 195    atgcatcccacaaaataacat 215
              |||||||||||||||||||||
Sbjct: 144255 atgcatcccacaaaataacat 144275
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 202     ccacaaaataacattcagagt 222
               |||||||||||||||||||||
Sbjct: 3237899 ccacaaaataacattcagagt 3237879
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>gb|AC002403.1|AC002403 Human Chromosome 11p15.5 pac pDJ608b4, complete sequence
          Length = 132960

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 151   tccatccaaatgaattgtcca 171
             |||||||||||||||||||||
Sbjct: 50104 tccatccaaatgaattgtcca 50084
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>gb|U90095.1|U90095 Human Chromosome 11p15.5 pac pDJ74k15, complete sequence
          Length = 120229

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 151    tccatccaaatgaattgtcca 171
              |||||||||||||||||||||
Sbjct: 118690 tccatccaaatgaattgtcca 118670
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>emb|AL928701.7| Zebrafish DNA sequence from clone CH211-201H21, complete sequence
          Length = 188745

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 195   atgcatcccacaaaataacat 215
             |||||||||||||||||||||
Sbjct: 25972 atgcatcccacaaaataacat 25992
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>emb|AL808141.8| Zebrafish DNA sequence from clone CH211-260N19, complete sequence
          Length = 147111

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 195   atgcatcccacaaaataacat 215
             |||||||||||||||||||||
Sbjct: 17594 atgcatcccacaaaataacat 17614
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>gb|AC167132.12| Mus musculus chromosome 8, clone RP24-335A22, complete sequence
          Length = 203284

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 246   cagaagcttccttcttccatt 266
             |||||||||||||||||||||
Sbjct: 46662 cagaagcttccttcttccatt 46642
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>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete
              sequence
          Length = 2105742

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 580    gtcatcctcatcttcttcca 599
              ||||||||||||||||||||
Sbjct: 286705 gtcatcctcatcttcttcca 286724
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>gb|AC116798.11| Mus musculus chromosome 1, clone RP24-329K22, complete sequence
          Length = 173479

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 246  cagaagcttccttcttccat 265
            ||||||||||||||||||||
Sbjct: 3481 cagaagcttccttcttccat 3462
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>gb|AC084296.12| Oryza sativa chromosome 3 BAC OSJNBb0024J04 genomic sequence, complete
             sequence
          Length = 145507

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 446   ttggttgatctttttcaact 465
             ||||||||||||||||||||
Sbjct: 89309 ttggttgatctttttcaact 89290
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>gb|AC131191.4| Mus musculus BAC clone RP24-464B16 from chromosome 18, complete
             sequence
          Length = 136832

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   cagaagcttccttcttccat 265
             ||||||||||||||||||||
Sbjct: 62510 cagaagcttccttcttccat 62529
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>gb|AC138109.3| Mus musculus BAC clone RP24-444I15 from chromosome 1, complete sequence
          Length = 209820

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 246    cagaagcttccttcttccat 265
              ||||||||||||||||||||
Sbjct: 154326 cagaagcttccttcttccat 154307
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>gb|AC130714.3| Mus musculus BAC clone RP23-367L18 from chromosome 18, complete sequence
          Length = 193184

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 246    cagaagcttccttcttccat 265
              ||||||||||||||||||||
Sbjct: 167982 cagaagcttccttcttccat 168001
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>gb|AC156556.8| Mus musculus chromosome 7, clone RP23-92E8, complete sequence
          Length = 250903

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 246    cagaagcttccttcttccat 265
              ||||||||||||||||||||
Sbjct: 109193 cagaagcttccttcttccat 109174
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 446      ttggttgatctttttcaact 465
                ||||||||||||||||||||
Sbjct: 32437181 ttggttgatctttttcaact 32437162
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>ref|XM_975010.1| PREDICTED: Mus musculus hypothetical protein LOC669245 (LOC669245),
           mRNA
          Length = 2064

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 246 cagaagcttccttcttccat 265
           ||||||||||||||||||||
Sbjct: 136 cagaagcttccttcttccat 117
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>ref|XM_974871.1| PREDICTED: Mus musculus hypothetical protein LOC664925 (LOC664925),
           mRNA
          Length = 2064

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 246 cagaagcttccttcttccat 265
           ||||||||||||||||||||
Sbjct: 136 cagaagcttccttcttccat 117
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>ref|XM_973576.1| PREDICTED: Mus musculus hypothetical protein LOC674284 (LOC674284),
           mRNA
          Length = 2064

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 246 cagaagcttccttcttccat 265
           ||||||||||||||||||||
Sbjct: 136 cagaagcttccttcttccat 117
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>emb|CT025601.7| Mouse DNA sequence from clone RP23-424B7 on chromosome 17, complete
             sequence
          Length = 197841

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   cagaagcttccttcttccat 265
             ||||||||||||||||||||
Sbjct: 85983 cagaagcttccttcttccat 85964
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>gb|AC116470.12| Mus musculus chromosome 16, clone RP23-383N18, complete sequence
          Length = 194593

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 246    cagaagcttccttcttccat 265
              ||||||||||||||||||||
Sbjct: 188090 cagaagcttccttcttccat 188109
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>ref|XM_569412.1| Cryptococcus neoformans var. neoformans JEC21 late endosome to
           vacuole transport-related protein (CNC00960) partial
           mRNA
          Length = 881

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 580 gtcatcctcatcttcttcca 599
           ||||||||||||||||||||
Sbjct: 664 gtcatcctcatcttcttcca 645
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>gb|AC125400.4| Mus musculus BAC clone RP24-380E10 from chromosome 10, complete sequence
          Length = 154681

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 402    caaacctccatcatttcttt 421
              ||||||||||||||||||||
Sbjct: 132599 caaacctccatcatttcttt 132580
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>gb|AC138619.4| Mus musculus BAC clone RP23-278M16 from chromosome 18, complete
             sequence
          Length = 170250

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   cagaagcttccttcttccat 265
             ||||||||||||||||||||
Sbjct: 17379 cagaagcttccttcttccat 17398
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>gb|AC123943.4| Mus musculus BAC clone RP23-480G20 from chromosome 12, complete
             sequence
          Length = 171251

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   caaacctccatcatttcttt 421
             ||||||||||||||||||||
Sbjct: 52696 caaacctccatcatttcttt 52715
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>gb|AC133889.9| Mus musculus chromosome 16, clone RP23-380I13, complete sequence
          Length = 235574

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   cagaagcttccttcttccat 265
             ||||||||||||||||||||
Sbjct: 55849 cagaagcttccttcttccat 55868
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>ref|XM_758556.1| Theileria parva strain Muguga chromosome 4 hypothetical protein
            (TP04_0014) partial mRNA
          Length = 1740

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 477  aatcttctccatcagcttca 496
            ||||||||||||||||||||
Sbjct: 1498 aatcttctccatcagcttca 1479
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>gb|AC113019.13| Mus musculus chromosome 7, clone RP23-185A21, complete sequence
          Length = 215975

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   acatccaagatcacagcaaa 144
             ||||||||||||||||||||
Sbjct: 76599 acatccaagatcacagcaaa 76580
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>emb|AL390035.10| Human DNA sequence from clone RP13-9D14 on chromosome X Contains the 5'
              end of gene KIAA2022 and a CpG island, complete sequence
          Length = 148057

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 235    caaaatgcaaccagaagctt 254
              ||||||||||||||||||||
Sbjct: 108064 caaaatgcaaccagaagctt 108083
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>emb|AL390866.14| Human DNA sequence from clone RP11-218D6 on chromosome 10 Contains the 5'
              end of the gene for a novel protein
              (FLJ10817)(DKFZP434P1735), a ribosomal protein L36a-like
              (RPL36AL)(RPL36A) pseudogene, a mitochondrial ribosomal
              protein S21 (MRPS21)(MDS016, RPMS21, MRP-S21) pseudogene, a
              novel gene, the 3' end of the gene for a novel protein
              (FLJ32798) and a CpG island, complete sequence
          Length = 206198

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 410    catcatttctttcctcaacc 429
              ||||||||||||||||||||
Sbjct: 166063 catcatttctttcctcaacc 166044
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>gb|AY043452.1| Helicobacter pylori adhesin-binding fucosylated histo-blood group
           antigen (babB) gene, babB-AD4 allele, partial cds
          Length = 2201

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 443 ggcttggttgatctttttca 462
           ||||||||||||||||||||
Sbjct: 537 ggcttggttgatctttttca 518
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>gb|AY113682.1| Equus caballus ribosomal protein L5 (RPL5) mRNA, complete cds
          Length = 987

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 576 tgtagtcatcctcatcttcttcca 599
           ||||| ||||||||||||||||||
Sbjct: 658 tgtaggcatcctcatcttcttcca 635
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>tpg|BK002895.1| TPA: TPA_inf: Drosophila melanogaster HDC16125 (HDC16125) gene,
            complete cds
          Length = 3028

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 467  cgggtagttgaatcttctcc 486
            ||||||||||||||||||||
Sbjct: 2998 cgggtagttgaatcttctcc 2979
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>dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001
          Length = 2005935

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 578     tagtcatcctcatcttcttc 597
               ||||||||||||||||||||
Sbjct: 1352686 tagtcatcctcatcttcttc 1352667
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>gb|AC108004.3| Homo sapiens chromosome 17, clone CTD-2348K1, complete sequence
          Length = 116762

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 264   attcttgtgtcatttcttca 283
             ||||||||||||||||||||
Sbjct: 60550 attcttgtgtcatttcttca 60569
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>gb|AC096739.3| Homo sapiens BAC clone RP11-213G21 from 4, complete sequence
          Length = 96482

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 580   gtcatcctcatcttcttcca 599
             ||||||||||||||||||||
Sbjct: 58810 gtcatcctcatcttcttcca 58829
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>dbj|AK148940.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN
            full-length enriched library, clone:7120465J07
            product:unclassifiable, full insert sequence
          Length = 2064

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 246  cagaagcttccttcttccat 265
            ||||||||||||||||||||
Sbjct: 1929 cagaagcttccttcttccat 1948
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 476      gaatcttctccatcagcttc 495
                ||||||||||||||||||||
Sbjct: 19662774 gaatcttctccatcagcttc 19662793
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 446      ttggttgatctttttcaact 465
                ||||||||||||||||||||
Sbjct: 32527691 ttggttgatctttttcaact 32527672
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>gb|AC007854.4|AC007854 Drosophila melanogaster, chromosome 3R, region 98F-98F, BAC clone
              BACR13H19, complete sequence
          Length = 155666

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 467    cgggtagttgaatcttctcc 486
              ||||||||||||||||||||
Sbjct: 114029 cgggtagttgaatcttctcc 114010
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>gb|AC092967.5| Homo sapiens 3 BAC RP11-521A24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 179848

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 406   cctccatcatttctttcctcaacc 429
             ||||||||||||||| ||||||||
Sbjct: 68978 cctccatcatttcttgcctcaacc 69001
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>emb|AL732612.28| Mouse DNA sequence from clone RP23-31L20 on chromosome 11, complete
             sequence
          Length = 145244

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   cagaagcttccttcttccat 265
             ||||||||||||||||||||
Sbjct: 14659 cagaagcttccttcttccat 14640
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>emb|AL845360.10| Mouse DNA sequence from clone RP23-421L7 on chromosome 2, complete
              sequence
          Length = 196651

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 246    cagaagcttccttcttccat 265
              ||||||||||||||||||||
Sbjct: 113584 cagaagcttccttcttccat 113603
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>dbj|AP000412.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K3G3
          Length = 24057

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 243  aaccagaagcttccttcttc 262
            ||||||||||||||||||||
Sbjct: 2599 aaccagaagcttccttcttc 2618
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>emb|AJ338005.1|HSA338005 Homo sapiens genomic sequence surrounding NotI site, clone
           NR1-IF13C
          Length = 709

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 130 caagatcacagcaaaagaac 149
           ||||||||||||||||||||
Sbjct: 494 caagatcacagcaaaagaac 513
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>gb|AC154739.2| Mus musculus BAC clone RP23-117B4 from 9, complete sequence
          Length = 196406

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                              
Query: 127    atccaagatcacagcaaaagaa-catccatcc 157
              ||||||||||||| |||||||| |||||||||
Sbjct: 114759 atccaagatcacatcaaaagaatcatccatcc 114790
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>gb|AC154630.2| Mus musculus BAC clone RP23-319C8 from 9, complete sequence
          Length = 182834

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                              
Query: 127    atccaagatcacagcaaaagaa-catccatcc 157
              ||||||||||||| |||||||| |||||||||
Sbjct: 181240 atccaagatcacatcaaaagaatcatccatcc 181271
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>gb|AC155288.3| Mus musculus 6 BAC RP24-176C17 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 168486

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 411   atcatttctttcctcaacct 430
             ||||||||||||||||||||
Sbjct: 62715 atcatttctttcctcaacct 62734
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>gb|AE003767.2| Drosophila melanogaster chromosome 3R, section 105 of 118 of the complete
              sequence
          Length = 231562

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 467    cgggtagttgaatcttctcc 486
              ||||||||||||||||||||
Sbjct: 161299 cgggtagttgaatcttctcc 161280
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>gb|AC074042.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-99G18, complete
              sequence
          Length = 226048

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 475    tgaatcttctccatcagctt 494
              ||||||||||||||||||||
Sbjct: 100399 tgaatcttctccatcagctt 100418
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>emb|AL831756.8| Mouse DNA sequence from clone RP23-300P20 on chromosome 4, complete
             sequence
          Length = 164883

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   cagaagcttccttcttccat 265
             ||||||||||||||||||||
Sbjct: 80777 cagaagcttccttcttccat 80796
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>emb|AL731591.3|OSJN00240 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039C07,
              complete sequence
          Length = 166410

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 476    gaatcttctccatcagcttc 495
              ||||||||||||||||||||
Sbjct: 113500 gaatcttctccatcagcttc 113519


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,507,907
Number of Sequences: 3902068
Number of extensions: 5507907
Number of successful extensions: 118286
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 117935
Number of HSP's gapped (non-prelim): 353
length of query: 610
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 587
effective length of database: 17,143,297,704
effective search space: 10063115752248
effective search space used: 10063115752248
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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