ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9l23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CN130_HUMAN (Q8N806) Protein C14orf130 55 2e-07
2CN130_MOUSE (Q8BU04) Protein C14orf130 homolog 54 5e-07
3LEU1_LEPIN (Q8F445) 2-isopropylmalate synthase (EC 2.3.3.13) (Al... 31 3.1
4LEU1_LEPIC (Q72RL9) 2-isopropylmalate synthase (EC 2.3.3.13) (Al... 31 3.1

>CN130_HUMAN (Q8N806) Protein C14orf130|
          Length = 425

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
 Frame = -3

Query: 605 LCKCGTCTNFYAQRGIAHLTDKEDSIEEYE---KIAXXXXXXXXXXXEGAEANFINSLDH 435
           LC C  C   Y    +  LTD+ D++  YE   KIA                + ++S++ 
Sbjct: 313 LCTCQDCMKMYGDLDVLFLTDEYDTVLAYENKGKIAQATDRSDPL------MDTLSSMNR 366

Query: 434 VQKIEILSGINDMKNEFQSFMESF-DPSKTVTSDDVQSIFKNLARKKQR 291
           VQ++E++   ND+K E + +++ F D    V  +D+Q  F+    KK+R
Sbjct: 367 VQQVELICEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRR 415



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>CN130_MOUSE (Q8BU04) Protein C14orf130 homolog|
          Length = 425

 Score = 53.9 bits (128), Expect = 5e-07
 Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
 Frame = -3

Query: 605 LCKCGTCTNFYAQRGIAHLTDKEDSIEEYEKIAXXXXXXXXXXXEGAEANFINSLDHVQK 426
           LC C  C   Y +  +  LTD+ D++  YE                   + ++S++ VQ+
Sbjct: 313 LCTCQDCMKMYGELDVLFLTDECDTVLAYEN---KGKNDQATDRRDPLMDTLSSMNRVQQ 369

Query: 425 IEILSGINDMKNEFQSFMESF-DPSKTVTSDDVQSIFKNLARKKQR 291
           +E++   ND+K E + +++ F D    V  +D+Q  F+    KK+R
Sbjct: 370 VELICEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRR 415



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>LEU1_LEPIN (Q8F445) 2-isopropylmalate synthase (EC 2.3.3.13)|
           (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase)
          Length = 501

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = -3

Query: 440 DHVQKIEILSGINDMKNEFQSFMESFDPSKTVTSDDVQSIFKNLARK 300
           D + K+     + +++  +Q F+E  D  K +  +D++++F   ARK
Sbjct: 341 DRIVKLGFSPQVEELEAAYQRFLEIADRKKEIYDEDIRALFSEEARK 387



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>LEU1_LEPIC (Q72RL9) 2-isopropylmalate synthase (EC 2.3.3.13)|
           (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase)
          Length = 501

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = -3

Query: 440 DHVQKIEILSGINDMKNEFQSFMESFDPSKTVTSDDVQSIFKNLARK 300
           D + K+     + +++  +Q F+E  D  K +  +D++++F   ARK
Sbjct: 341 DRIVKLGFSPQVEELEAAYQRFLEIADRKKEIYDEDIRALFSEEARK 387


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,788,781
Number of Sequences: 219361
Number of extensions: 1751916
Number of successful extensions: 4419
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4418
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6882837918
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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