Clone Information

BLAST Search Result

Clone Name	rbags9l23
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK071835.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	218	2e-53
2	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	194	3e-46
3	dbj\|AP005450.3\| Oryza sativa (japonica cultivar-group) genomic D...	194	3e-46
4	emb\|AL161420.10\| Human DNA sequence from clone RP11-155N3 on chr...	44	0.61
5	gb\|AC023302.9\| Homo sapiens chromosome 15, clone RP11-28H5, comp...	44	0.61
6	gb\|AC027808.9\| Homo sapiens chromosome 15, clone RP11-351M8, com...	44	0.61
7	gb\|AC004816.1\|AC004816 Homo sapiens PAC clone RP6-65G23 from 14q...	44	0.61
8	gb\|AC161368.2\| Mus musculus BAC clone RP23-460M18 from chromosom...	42	2.4
9	emb\|AL731853.9\| Mouse DNA sequence from clone RP23-128G5 on chro...	42	2.4
10	gb\|AC078790.2\| Mus musculus strain C57BL6/J chromosome 6 clone R...	42	2.4
11	emb\|AL627104.16\| Mouse DNA sequence from clone RP23-412B2 on chr...	42	2.4
12	gb\|AC171104.1\| Drosophila melanogaster clone CH221-06A19, comple...	40	9.5
13	gb\|AC140197.4\| Mus musculus BAC clone RP23-253A22 from chromosom...	40	9.5
14	gb\|AC145877.3\| Pan troglodytes BAC clone RP43-20I7 from 7, compl...	40	9.5
15	gb\|AC125152.5\| Mus musculus BAC clone RP24-366J2 from chromosome...	40	9.5
16	gb\|AC127333.3\| Mus musculus BAC clone RP23-137F10 from 7, comple...	40	9.5
17	gb\|AC125213.3\| Mus musculus BAC clone RP23-136A14 from 7, comple...	40	9.5
18	ref\|XM_719502.1\| Plasmodium yoelii yoelii str. 17XNL rhoptry pro...	40	9.5
19	emb\|AL355344.20\| Human DNA sequence from clone RP11-710A11 on ch...	40	9.5
20	gb\|AC130389.3\| Drosophila melanogaster 3 BAC CH221-6A19 (Childre...	40	9.5
21	emb\|AL162578.13\| Human DNA sequence from clone RP11-2J18 on chro...	40	9.5
22	emb\|AL121999.18\|HSJ543J13 Human DNA sequence from clone RP4-543J...	40	9.5
23	emb\|AL035470.10\|HS480J14 Human DNA sequence from clone RP3-480J1...	40	9.5
24	emb\|CR378663.1\| Photobacterium profundum SS9; segment 1/12	40	9.5
25	emb\|AJ009961.1\|FRU009961 Fugu rubripes PRGFR1 gene, exons 1-20	40	9.5
26	emb\|CR354383.8\| Zebrafish DNA sequence from clone CH211-123O7 in...	40	9.5
27	emb\|CR354613.7\| Zebrafish DNA sequence from clone CH211-112G7 in...	40	9.5
28	gb\|AC104335.2\| Homo sapiens chromosome 1 clone RP11-433K2, compl...	40	9.5
29	gb\|AC105293.2\| Drosophila melanogaster 3L BAC RP98-45O17 (Roswel...	40	9.5
30	gb\|AC093501.4\| Drosophila melanogaster 3L BAC RP98-48E9 (Roswell...	40	9.5
31	gb\|AC087277.11\| Homo sapiens chromosome 11, clone RP11-514F3, co...	40	9.5
32	gb\|AC037441.12\| Homo sapiens chromosome , clone RP11-87E22, comp...	40	9.5
33	gb\|AC009196.14\| Homo sapiens chromosome 7 clone RP11-49B7, compl...	40	9.5
34	dbj\|AK139264.1\| Mus musculus 7 days neonate cerebellum cDNA, RIK...	40	9.5
35	gb\|AC091727.2\|AC091727 Takifugu rubripes clone 250A8, complete s...	40	9.5
36	gb\|DP000006.1\| Oryctolagus cuniculus target 1 genomic scaffold	40	9.5
37	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.5
38	gb\|AC008179.2\| Homo sapiens BAC clone RP11-576F1 from 2, complet...	40	9.5
39	gb\|BC089679.1\| Xenopus tropicalis hypothetical LOC548370, mRNA (...	40	9.5
40	gb\|AC007444.1\|AC007444 Homo sapiens clone RP11-340F1 from 7p14-1...	40	9.5
41	gb\|AC151440.3\| Oryctolagus cuniculus clone LB1-272E15, complete ...	40	9.5
42	gb\|AC149599.3\| Mus musculus BAC clone RP23-193A3 from 18, comple...	40	9.5
43	gb\|AE003467.4\| Drosophila melanogaster chromosome 3L, section 1 ...	40	9.5
44	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.5
45	gb\|AC140462.3\| Mus musculus BAC clone RP23-13K8 from 14, complet...	40	9.5
46	emb\|AL929246.7\| Mouse DNA sequence from clone RP23-34J8 on chrom...	40	9.5
47	gb\|AC055854.14\| Homo sapiens chromosome 8, clone RP11-459E5, com...	40	9.5

>dbj|AK071835.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023115A04, full
            insert sequence
          Length = 1679

 Score =  218 bits (110), Expect = 2e-53
 Identities = 306/370 (82%), Gaps = 1/370 (0%)
 Strand = Plus / Minus

                                                                        
Query: 298  ttcttcctagcaagattcttgaaaatagattgtacgtcatcagatgtgactgtttttgat 357
            |||||| ||||||||||||  |||| || | |||  || ||||||||||| | |||||||
Sbjct: 1384 ttcttcttagcaagattctcaaaaacagctcgtatatcttcagatgtgaccggttttgat 1325

                                                                        
Query: 358  ggatcaaaggattccatgaaggattgaaactcatttttcatgtcattgatgccactcaga 417
            | |||||| | |||||  || || |||| |||||| |||||||||||||||||||||| |
Sbjct: 1324 gaatcaaaagtttccagaaaagactgaagctcattcttcatgtcattgatgccactcaaa 1265

                                                                        
Query: 418  atctctatcttctggacatggtcaagtgaattgatgaaattagcttcagctccttcctgc 477
            ||||| |||||||| |||||||| |||||||| |  || || |||||| |||||||||||
Sbjct: 1264 atctcaatcttctgtacatggtcgagtgaattaagaaagtttgcttcaactccttcctgc 1205

                                                                        
Query: 478  tgttccaacttcttctcccttttctgcttagctatcttctcgtattcctcaatagagtcc 537
            || ||||||||||| ||||| ||||||||||| | |||||| || |||||||||||||| 
Sbjct: 1204 tgctccaacttcttttccctcttctgcttagcaaccttctcatactcctcaatagagtct 1145

                                                                        
Query: 538  tccttatcagtaagatgtgcaatgcctcgttgtgcatagaagttggtgcatgttccacat 597
            ||||| ||  |||| |  ||||  ||| ||||||||||||||| |||||| ||| |||||
Sbjct: 1144 tccttgtctataaggtacgcaacaccttgttgtgcatagaagtcggtgcaagtttcacat 1085

                                                                        
Query: 598  ttacacaggggtctctctccagccttttgacatgaacaggggcataattttctctgaatc 657
             |||| |     ||||||||||| ||||||||| || |  |||||  |||||||||||||
Sbjct: 1084 ctacaga-taacctctctccagctttttgacataaaaaacggcatctttttctctgaatc 1026

                      
Query: 658  agctgatggt 667
            ||||||||||
Sbjct: 1025 agctgatggt 1016

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  194 bits (98), Expect = 3e-46
 Identities = 240/286 (83%), Gaps = 1/286 (0%)
 Strand = Plus / Minus

                                                                            
Query: 382      tgaaactcatttttcatgtcattgatgccactcagaatctctatcttctggacatggtca 441
                |||| |||||| |||||||||||||||||||||| |||||| |||||||| |||||||| 
Sbjct: 19319788 tgaagctcattcttcatgtcattgatgccactcaaaatctcaatcttctgtacatggtcg 19319729

                                                                            
Query: 442      agtgaattgatgaaattagcttcagctccttcctgctgttccaacttcttctcccttttc 501
                |||||||| |  || || |||||| ||||||||||||| ||||||||||| ||||| |||
Sbjct: 19319728 agtgaattaagaaagtttgcttcaactccttcctgctgctccaacttcttttccctcttc 19319669

                                                                            
Query: 502      tgcttagctatcttctcgtattcctcaatagagtcctccttatcagtaagatgtgcaatg 561
                |||||||| | |||||| || |||||||||||||| ||||| ||  |||| |  ||||  
Sbjct: 19319668 tgcttagcaaccttctcatactcctcaatagagtcttccttgtctataaggtacgcaaca 19319609

                                                                            
Query: 562      cctcgttgtgcatagaagttggtgcatgttccacatttacacaggggtctctctccagcc 621
                ||| ||||||||||||||| |||||| ||| ||||| |||| |     ||||||||||| 
Sbjct: 19319608 ccttgttgtgcatagaagtcggtgcaagtttcacatctacaga-taacctctctccagct 19319550

                                                              
Query: 622      ttttgacatgaacaggggcataattttctctgaatcagctgatggt 667
                ||||||||| || |  |||||  |||||||||||||||||||||||
Sbjct: 19319549 ttttgacataaaaaacggcatctttttctctgaatcagctgatggt 19319504



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                            
Query: 298      ttcttcctagcaagattcttgaaaatagattgtacgtcatcagatgtgactgtttttgat 357
                |||||| ||||||||||||  |||| || | |||  || ||||||||||| | |||||||
Sbjct: 19321427 ttcttcttagcaagattctcaaaaacagctcgtatatcttcagatgtgaccggttttgat 19321368

                        
Query: 358      ggatcaaa 365
                | ||||||
Sbjct: 19321367 gaatcaaa 19321360

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>dbj|AP005450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0438E12
          Length = 146851

 Score =  194 bits (98), Expect = 3e-46
 Identities = 240/286 (83%), Gaps = 1/286 (0%)
 Strand = Plus / Minus

                                                                         
Query: 382   tgaaactcatttttcatgtcattgatgccactcagaatctctatcttctggacatggtca 441
             |||| |||||| |||||||||||||||||||||| |||||| |||||||| |||||||| 
Sbjct: 24561 tgaagctcattcttcatgtcattgatgccactcaaaatctcaatcttctgtacatggtcg 24502

                                                                         
Query: 442   agtgaattgatgaaattagcttcagctccttcctgctgttccaacttcttctcccttttc 501
             |||||||| |  || || |||||| ||||||||||||| ||||||||||| ||||| |||
Sbjct: 24501 agtgaattaagaaagtttgcttcaactccttcctgctgctccaacttcttttccctcttc 24442

                                                                         
Query: 502   tgcttagctatcttctcgtattcctcaatagagtcctccttatcagtaagatgtgcaatg 561
             |||||||| | |||||| || |||||||||||||| ||||| ||  |||| |  ||||  
Sbjct: 24441 tgcttagcaaccttctcatactcctcaatagagtcttccttgtctataaggtacgcaaca 24382

                                                                         
Query: 562   cctcgttgtgcatagaagttggtgcatgttccacatttacacaggggtctctctccagcc 621
             ||| ||||||||||||||| |||||| ||| ||||| |||| |     ||||||||||| 
Sbjct: 24381 ccttgttgtgcatagaagtcggtgcaagtttcacatctacaga-taacctctctccagct 24323

                                                           
Query: 622   ttttgacatgaacaggggcataattttctctgaatcagctgatggt 667
             ||||||||| || |  |||||  |||||||||||||||||||||||
Sbjct: 24322 ttttgacataaaaaacggcatctttttctctgaatcagctgatggt 24277



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                         
Query: 298   ttcttcctagcaagattcttgaaaatagattgtacgtcatcagatgtgactgtttttgat 357
             |||||| ||||||||||||  |||| || | |||  || ||||||||||| | |||||||
Sbjct: 26200 ttcttcttagcaagattctcaaaaacagctcgtatatcttcagatgtgaccggttttgat 26141

                     
Query: 358   ggatcaaa 365
             | ||||||
Sbjct: 26140 gaatcaaa 26133

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>emb|AL161420.10| Human DNA sequence from clone RP11-155N3 on chromosome 13 Contains the
             3' end of the gene for zizimin1 (KIAA1058) and a novel
             gene, complete sequence
          Length = 163316

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 186   ggtggccagataacagttggaa 207
             ||||||||||||||||||||||
Sbjct: 89111 ggtggccagataacagttggaa 89090

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>gb|AC023302.9| Homo sapiens chromosome 15, clone RP11-28H5, complete sequence
          Length = 151927

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 425  tcttctggacatggtcaagtga 446
            ||||||||||||||||||||||
Sbjct: 3957 tcttctggacatggtcaagtga 3936

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>gb|AC027808.9| Homo sapiens chromosome 15, clone RP11-351M8, complete sequence
          Length = 221936

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 425   tcttctggacatggtcaagtga 446
             ||||||||||||||||||||||
Sbjct: 63304 tcttctggacatggtcaagtga 63325

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>gb|AC004816.1|AC004816 Homo sapiens PAC clone RP6-65G23 from 14q24.3, complete sequence
          Length = 166200

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 477    ctgttccaacttcttctccctt 498
              ||||||||||||||||||||||
Sbjct: 136784 ctgttccaacttcttctccctt 136805

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>gb|AC161368.2| Mus musculus BAC clone RP23-460M18 from chromosome 6, complete sequence
          Length = 171306

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 486   cttcttctcccttttctgctt 506
             |||||||||||||||||||||
Sbjct: 66917 cttcttctcccttttctgctt 66937

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>emb|AL731853.9| Mouse DNA sequence from clone RP23-128G5 on chromosome 11 Contains the 5'
              end of the Osbp2 gene for oxysterol binding protein 2, a
              novel pseudogene, two novel genes, the Dusp18 gene for dual
              specificity phosphatase 18 and five CpG islands, complete
              sequence
          Length = 205509

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 494    cccttttctgcttagctatct 514
              |||||||||||||||||||||
Sbjct: 110225 cccttttctgcttagctatct 110205

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>gb|AC078790.2| Mus musculus strain C57BL6/J chromosome 6 clone RP23-232C14, complete
             sequence
          Length = 173690

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 486   cttcttctcccttttctgctt 506
             |||||||||||||||||||||
Sbjct: 36537 cttcttctcccttttctgctt 36517

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>emb|AL627104.16| Mouse DNA sequence from clone RP23-412B2 on chromosome 4, complete
              sequence
          Length = 193363

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 486    cttcttctcccttttctgctt 506
              |||||||||||||||||||||
Sbjct: 145301 cttcttctcccttttctgctt 145321

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>gb|AC171104.1| Drosophila melanogaster clone CH221-06A19, complete sequence
          Length = 125302

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 491   tctcccttttctgcttagct 510
             ||||||||||||||||||||
Sbjct: 69346 tctcccttttctgcttagct 69365

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>gb|AC140197.4| Mus musculus BAC clone RP23-253A22 from chromosome 18, complete sequence
          Length = 192563

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 368    attccatgaaggattgaaac 387
              ||||||||||||||||||||
Sbjct: 171602 attccatgaaggattgaaac 171621

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>gb|AC145877.3| Pan troglodytes BAC clone RP43-20I7 from 7, complete sequence
          Length = 192794

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 487   ttcttctcccttttctgctt 506
             ||||||||||||||||||||
Sbjct: 20822 ttcttctcccttttctgctt 20841

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>gb|AC125152.5| Mus musculus BAC clone RP24-366J2 from chromosome 14, complete sequence
          Length = 134122

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 460    gcttcagctccttcctgctg 479
              ||||||||||||||||||||
Sbjct: 132144 gcttcagctccttcctgctg 132125

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>gb|AC127333.3| Mus musculus BAC clone RP23-137F10 from 7, complete sequence
          Length = 185795

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 299   tcttcctagcaagattcttg 318
             ||||||||||||||||||||
Sbjct: 25219 tcttcctagcaagattcttg 25200

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>gb|AC125213.3| Mus musculus BAC clone RP23-136A14 from 7, complete sequence
          Length = 194309

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 299   tcttcctagcaagattcttg 318
             ||||||||||||||||||||
Sbjct: 12742 tcttcctagcaagattcttg 12761

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>ref|XM_719502.1| Plasmodium yoelii yoelii str. 17XNL rhoptry protein (PY04318) partial
            mRNA
          Length = 8472

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 487  ttcttctcccttttctgctt 506
            ||||||||||||||||||||
Sbjct: 3621 ttcttctcccttttctgctt 3602

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>emb|AL355344.20| Human DNA sequence from clone RP11-710A11 on chromosome 10 Contains the
             3' end for a novel gene (KIAA1274), the PRF1 gene
             forperforin 1 (pore forming protein), the 5' end of the
             ADAMTS14 gene for a disintegrin-like and metalloprotease
             (reprolysin type) with thrombospondin type 1 motif 14, and
             one CpG island, complete sequence
          Length = 149490

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 167   aacagtacccacacaagacggtggccag 194
             |||| |||||| ||||||||||||||||
Sbjct: 14446 aacattacccagacaagacggtggccag 14419

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>gb|AC130389.3| Drosophila melanogaster 3 BAC CH221-6A19 (Children's Hospital Oakland
             Research Institute Drosophila melanogaster sheared DNA BAC
             Library) complete sequence
          Length = 108834

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 491   tctcccttttctgcttagct 510
             ||||||||||||||||||||
Sbjct: 52877 tctcccttttctgcttagct 52896

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>emb|AL162578.13| Human DNA sequence from clone RP11-2J18 on chromosome 6 Contains the 5'
             end of a ribosomal protein S15a (RPS15A) and part of the
             gene for BRG1-binding protein ELD/OSA1 (p250R KIAA1235)
             (FLJ00253, FLJ22292), complete sequence
          Length = 182823

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 403   ttgatgccactcagaatctc 422
             ||||||||||||||||||||
Sbjct: 88066 ttgatgccactcagaatctc 88085

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>emb|AL121999.18|HSJ543J13 Human DNA sequence from clone RP4-543J13 on chromosome 1p13.1-13.3
              Contains a novel gene, complete sequence
          Length = 137490

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 482    ccaacttcttctcccttttc 501
              ||||||||||||||||||||
Sbjct: 120174 ccaacttcttctcccttttc 120193

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>emb|AL035470.10|HS480J14 Human DNA sequence from clone RP3-480J14 on chromosome 6q22.2-23.1
             Contains the 3' end of the PTPRK gene for protein tyrosine
             phosphatase receptor type K (R-PTP-KAPPA) and the 5' end
             of the C6orf190 gene, complete sequence
          Length = 105468

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 626   gacatgaacaggggcataat 645
             ||||||||||||||||||||
Sbjct: 59475 gacatgaacaggggcataat 59494

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>emb|CR378663.1| Photobacterium profundum SS9; segment 1/12
          Length = 348044

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 442    agtgaattgatgaaattagc 461
              ||||||||||||||||||||
Sbjct: 242282 agtgaattgatgaaattagc 242301

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>emb|AJ009961.1|FRU009961 Fugu rubripes PRGFR1 gene, exons 1-20
          Length = 45370

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 449   tgatgaaattagcttcagct 468
             ||||||||||||||||||||
Sbjct: 42566 tgatgaaattagcttcagct 42585

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>emb|CR354383.8| Zebrafish DNA sequence from clone CH211-123O7 in linkage group 21,
              complete sequence
          Length = 168569

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 388    tcatttttcatgtcattgat 407
              ||||||||||||||||||||
Sbjct: 116003 tcatttttcatgtcattgat 115984

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>emb|CR354613.7| Zebrafish DNA sequence from clone CH211-112G7 in linkage group 21,
              complete sequence
          Length = 179432

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 388    tcatttttcatgtcattgat 407
              ||||||||||||||||||||
Sbjct: 153656 tcatttttcatgtcattgat 153637

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>gb|AC104335.2| Homo sapiens chromosome 1 clone RP11-433K2, complete sequence
          Length = 212426

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     tgactttgaaacatctagca 107
              ||||||||||||||||||||
Sbjct: 118270 tgactttgaaacatctagca 118289

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>gb|AC105293.2| Drosophila melanogaster 3L BAC RP98-45O17 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 190353

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 491   tctcccttttctgcttagct 510
             ||||||||||||||||||||
Sbjct: 39163 tctcccttttctgcttagct 39182

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>gb|AC093501.4| Drosophila melanogaster 3L BAC RP98-48E9 (Roswell Park Cancer
            Institute Drosophila BAC Library) complete sequence
          Length = 173497

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 491  tctcccttttctgcttagct 510
            ||||||||||||||||||||
Sbjct: 6854 tctcccttttctgcttagct 6873

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>gb|AC087277.11| Homo sapiens chromosome 11, clone RP11-514F3, complete sequence
          Length = 196859

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 606    gggtctctctccagcctttt 625
              ||||||||||||||||||||
Sbjct: 100330 gggtctctctccagcctttt 100311

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>gb|AC037441.12| Homo sapiens chromosome , clone RP11-87E22, complete sequence
          Length = 163147

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 464   cagctccttcctgctgttcc 483
             ||||||||||||||||||||
Sbjct: 36835 cagctccttcctgctgttcc 36854

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>gb|AC009196.14| Homo sapiens chromosome 7 clone RP11-49B7, complete sequence
          Length = 170763

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 487    ttcttctcccttttctgctt 506
              ||||||||||||||||||||
Sbjct: 149996 ttcttctcccttttctgctt 149977

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>dbj|AK139264.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:A730084M02 product:general
            transcription factor III C 1, full insert sequence
          Length = 4067

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 299  tcttcctagcaagattcttg 318
            ||||||||||||||||||||
Sbjct: 4018 tcttcctagcaagattcttg 4037

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>gb|AC091727.2|AC091727 Takifugu rubripes clone 250A8, complete sequence
          Length = 58366

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 449  tgatgaaattagcttcagct 468
            ||||||||||||||||||||
Sbjct: 4009 tgatgaaattagcttcagct 4028

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>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold
          Length = 1889755

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 347  ctgtttttgatggatcaaag 366
            ||||||||||||||||||||
Sbjct: 8437 ctgtttttgatggatcaaag 8418

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 302      tcctagcaagattcttgaaa 321
                ||||||||||||||||||||
Sbjct: 21460948 tcctagcaagattcttgaaa 21460929

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>gb|AC008179.2| Homo sapiens BAC clone RP11-576F1 from 2, complete sequence
          Length = 181745

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 496    cttttctgcttagctatctt 515
              ||||||||||||||||||||
Sbjct: 142687 cttttctgcttagctatctt 142668

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>gb|BC089679.1| Xenopus tropicalis hypothetical LOC548370, mRNA (cDNA clone
           IMAGE:7024380), partial cds
          Length = 2113

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 579 gttggtgcatgttccacatt 598
           ||||||||||||||||||||
Sbjct: 692 gttggtgcatgttccacatt 673

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>gb|AC007444.1|AC007444 Homo sapiens clone RP11-340F1 from 7p14-15, complete sequence
          Length = 156940

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 487  ttcttctcccttttctgctt 506
            ||||||||||||||||||||
Sbjct: 1578 ttcttctcccttttctgctt 1559

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>gb|AC151440.3| Oryctolagus cuniculus clone LB1-272E15, complete sequence
          Length = 71945

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 347  ctgtttttgatggatcaaag 366
            ||||||||||||||||||||
Sbjct: 8437 ctgtttttgatggatcaaag 8418

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>gb|AC149599.3| Mus musculus BAC clone RP23-193A3 from 18, complete sequence
          Length = 208349

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 368    attccatgaaggattgaaac 387
              ||||||||||||||||||||
Sbjct: 107827 attccatgaaggattgaaac 107846

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>gb|AE003467.4| Drosophila melanogaster chromosome 3L, section 1 of 83 of the complete
             sequence
          Length = 303512

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 491   tctcccttttctgcttagct 510
             ||||||||||||||||||||
Sbjct: 52877 tctcccttttctgcttagct 52896

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 302      tcctagcaagattcttgaaa 321
                ||||||||||||||||||||
Sbjct: 21389269 tcctagcaagattcttgaaa 21389250

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>gb|AC140462.3| Mus musculus BAC clone RP23-13K8 from 14, complete sequence
          Length = 199933

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 460    gcttcagctccttcctgctg 479
              ||||||||||||||||||||
Sbjct: 173863 gcttcagctccttcctgctg 173882

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>emb|AL929246.7| Mouse DNA sequence from clone RP23-34J8 on chromosome 2, complete
              sequence
          Length = 142905

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 342    tgtgactgtttttgatggat 361
              ||||||||||||||||||||
Sbjct: 125231 tgtgactgtttttgatggat 125212

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>gb|AC055854.14| Homo sapiens chromosome 8, clone RP11-459E5, complete sequence
          Length = 138388

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 464    cagctccttcctgctgttcc 483
              ||||||||||||||||||||
Sbjct: 111981 cagctccttcctgctgttcc 112000


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,857,444
Number of Sequences: 3902068
Number of extensions: 6857444
Number of successful extensions: 129198
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 128970
Number of HSP's gapped (non-prelim): 222
length of query: 691
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 668
effective length of database: 17,143,297,704
effective search space: 11451722866272
effective search space used: 11451722866272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result