>COHA1_HUMAN (Q9UMD9) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen|
           2) (180 kDa bullous pemphigoid antigen 2)
          Length = 1497

 Score = 33.1 bits (74), Expect = 0.99
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 281 LLQSLANRATGVTKSTTSISWKKRLPSSEPAFNTGDACPVTQFTDLPAASLLHE 442
           L  SL   + G T ++T+   KK +P S  A NTG +      T + +  LLH+
Sbjct: 287 LAPSLTTLSHGTTTTSTAYGVKKNMPQSPAAVNTGVSTSAACTTSVQSDDLLHK 340

>ILVG_MYCTU (P66946) Probable acetolactate synthase (EC 2.2.1.6)|
           (Acetohydroxy-acid synthase) (ALS)
          Length = 547

 Score = 33.1 bits (74), Expect = 0.99
 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = -1

Query: 507 WSGIHETPELHVSRTPPGCSSSSCSNDAA--GRSVNCVTGQASPVLKAGSDDGNLFFHEI 334
           WS +   P +      PG ++   +  AA   +S   V G  +P L+ G   G+L   EI
Sbjct: 67  WSKVTRVPGVAALTAGPGITNGMSAMAAAQQNQSPLVVLGGRAPALRWGM--GSL--QEI 122

Query: 333 DVVDLVTPVARFARDCSKA 277
           D V  V PVARFA     A
Sbjct: 123 DHVPFVAPVARFAATAQSA 141

>ILVG_MYCBO (P66947) Probable acetolactate synthase (EC 2.2.1.6)|
           (Acetohydroxy-acid synthase) (ALS)
          Length = 547

 Score = 33.1 bits (74), Expect = 0.99
 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = -1

Query: 507 WSGIHETPELHVSRTPPGCSSSSCSNDAA--GRSVNCVTGQASPVLKAGSDDGNLFFHEI 334
           WS +   P +      PG ++   +  AA   +S   V G  +P L+ G   G+L   EI
Sbjct: 67  WSKVTRVPGVAALTAGPGITNGMSAMAAAQQNQSPLVVLGGRAPALRWGM--GSL--QEI 122

Query: 333 DVVDLVTPVARFARDCSKA 277
           D V  V PVARFA     A
Sbjct: 123 DHVPFVAPVARFAATAQSA 141

>Y324_BUCAI (P57409) Hypothetical protein BU324|
          Length = 221

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 15/57 (26%), Positives = 32/57 (56%)
 Frame = +2

Query: 185 KILYWVSPAKHYNSMTIGEFVRSIILGQMLAALLQSLANRATGVTKSTTSISWKKRL 355
           K +YW    ++ NS+ IGE+  S++  +++   +++L  R T V+  +  I ++  L
Sbjct: 122 KQVYWAKYTRNKNSIWIGEYTESLLEKKIIQEKIENLKKRWTLVSDQSELIEFQNIL 178

>WFDC2_PIG (Q8MI69) WAP four-disulfide core domain protein 2 precursor|
           (Epididymal secretory protein E4)
          Length = 123

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 26/98 (26%), Positives = 39/98 (39%)
 Frame = -1

Query: 555 LTLMLNIPLMTSGYMEWSGIHETPELHVSRTPPGCSSSSCSNDAAGRSVNCVTGQASPVL 376
           L L+L +P +T    E SG+    E+ ++ T    S + C+++       CVT    P  
Sbjct: 15  LGLLLGLPPVTGTGAEKSGVCPAVEVDMNCTQECLSDADCADNLKCCKAGCVTICQMPNE 74

Query: 375 KAGSDDGNLFFHEIDVVDLVTPVARFARDCSKAASICP 262
           K GS            VD+  P      D  +  S CP
Sbjct: 75  KEGS---------CPQVDIAFPQLGLCLDQCQVDSQCP 103

>SYMM_CANAL (O74634) Methionyl-tRNA synthetase, mitochondrial (EC 6.1.1.10)|
           (Methionine--tRNA ligase) (MetRS)
          Length = 577

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 17/71 (23%), Positives = 31/71 (43%)
 Frame = +3

Query: 558 ILVSSSTGWAREDSEILDPQTSFRSIGAKNSSVSDSPEVINGIFKITASNFXFLLPLVGL 737
           I   + +GW     E   P+T    +     +V  S E  N +     +N+ F L +   
Sbjct: 133 IYTDTHSGWYSISDETFFPETQIEEVVKNGKAVKISSETKNEVVYQEETNYFFKLSMF-Q 191

Query: 738 QRILKFLMQRP 770
           +++++FL Q P
Sbjct: 192 EQLIQFLKQNP 202

>VAS1_RAT (O54715) Vacuolar ATP synthase subunit S1 precursor (EC 3.6.3.14)|
           (V-ATPase S1 subunit) (V-ATPase S1 accessory protein)
           (V-ATPase Ac45 subunit) (C7-1 protein)
          Length = 463

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 21/52 (40%), Positives = 27/52 (51%)
 Frame = +1

Query: 76  LKKRVLRVSTPSLLQIRLLYTLVPSGLLFYDNILLQQDFVLG*SSKALQLND 231
           LK+  L  S P+LL IRL YT   SGL+    +L   D V+G     L+  D
Sbjct: 158 LKELKLNASLPALLLIRLPYT-ASSGLMAPREVLTGNDEVIGQVLSTLESED 208


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,550,868
Number of Sequences: 219361
Number of extensions: 2533448
Number of successful extensions: 7597
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7593
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 8240858456
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)