Clone Name | rbags9l21 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_477178.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1326 Score = 46.1 bits (23), Expect = 0.17 Identities = 38/43 (88%) Strand = Plus / Minus Query: 217 ttacaactcaatgacaataggggagtttgtcagatcaataatc 259 ||||||||| |||||||| || ||| |||||||||||| |||| Sbjct: 1326 ttacaactcgatgacaattggtgagcttgtcagatcaacaatc 1284
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 46.1 bits (23), Expect = 0.17 Identities = 38/43 (88%) Strand = Plus / Plus Query: 217 ttacaactcaatgacaataggggagtttgtcagatcaataatc 259 ||||||||| |||||||| || ||| |||||||||||| |||| Sbjct: 7290890 ttacaactcgatgacaattggtgagcttgtcagatcaacaatc 7290932
>dbj|AP005774.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0086N05 Length = 163670 Score = 46.1 bits (23), Expect = 0.17 Identities = 38/43 (88%) Strand = Plus / Plus Query: 217 ttacaactcaatgacaataggggagtttgtcagatcaataatc 259 ||||||||| |||||||| || ||| |||||||||||| |||| Sbjct: 17571 ttacaactcgatgacaattggtgagcttgtcagatcaacaatc 17613
>dbj|AP005764.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0016A21 Length = 144076 Score = 46.1 bits (23), Expect = 0.17 Identities = 38/43 (88%) Strand = Plus / Plus Query: 217 ttacaactcaatgacaataggggagtttgtcagatcaataatc 259 ||||||||| |||||||| || ||| |||||||||||| |||| Sbjct: 131374 ttacaactcgatgacaattggtgagcttgtcagatcaacaatc 131416
>gb|AC159816.2| Mus musculus BAC clone RP23-321A19 from chromosome 9, complete sequence Length = 191274 Score = 44.1 bits (22), Expect = 0.68 Identities = 22/22 (100%) Strand = Plus / Minus Query: 205 tccagcaaagcattacaactca 226 |||||||||||||||||||||| Sbjct: 3292 tccagcaaagcattacaactca 3271
>gb|AC162180.2| Mus musculus BAC clone RP23-126K16 from chromosome 9, complete sequence Length = 226160 Score = 44.1 bits (22), Expect = 0.68 Identities = 22/22 (100%) Strand = Plus / Minus Query: 205 tccagcaaagcattacaactca 226 |||||||||||||||||||||| Sbjct: 165265 tccagcaaagcattacaactca 165244
>emb|CR762483.10| Zebrafish DNA sequence from clone DKEY-112K13 in linkage group 13, complete sequence Length = 79283 Score = 44.1 bits (22), Expect = 0.68 Identities = 22/22 (100%) Strand = Plus / Plus Query: 23 attatttatcataaaacaacaa 44 |||||||||||||||||||||| Sbjct: 33271 attatttatcataaaacaacaa 33292
>gb|CP000017.1| Streptococcus pyogenes MGAS5005, complete genome Length = 1838554 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 675 atcaatggtatattcaaaatcacag 699 ||||||||||||||| ||||||||| Sbjct: 152793 atcaatggtatattctaaatcacag 152817
>gb|CP000261.1| Streptococcus pyogenes MGAS2096, complete genome Length = 1860355 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 675 atcaatggtatattcaaaatcacag 699 ||||||||||||||| ||||||||| Sbjct: 158028 atcaatggtatattctaaatcacag 158052
>gb|CP000259.1| Streptococcus pyogenes MGAS9429, complete genome Length = 1836467 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 675 atcaatggtatattcaaaatcacag 699 ||||||||||||||| ||||||||| Sbjct: 158075 atcaatggtatattctaaatcacag 158099
>gb|AC107882.3| Homo sapiens chromosome 11, clone CTD-2019O4, complete sequence Length = 130916 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 27 tttatcataaaacaacaagaa 47 ||||||||||||||||||||| Sbjct: 57428 tttatcataaaacaacaagaa 57448
>gb|AC009989.12| Homo sapiens chromosome 10 clone RP11-7P17, complete sequence Length = 175690 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 368 cctgccttcaacactggagat 388 ||||||||||||||||||||| Sbjct: 98826 cctgccttcaacactggagat 98806
>gb|AC107886.2| Homo sapiens chromosome 11, clone CTD-3064C13, complete sequence Length = 133892 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 27 tttatcataaaacaacaagaa 47 ||||||||||||||||||||| Sbjct: 13651 tttatcataaaacaacaagaa 13631
>gb|AC010545.9| Homo sapiens chromosome 16 clone RP11-449H11, complete sequence Length = 170517 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 368 cctgccttcaacactggagat 388 ||||||||||||||||||||| Sbjct: 21347 cctgccttcaacactggagat 21327
>dbj|AB128035.1| Streptococcus dysgalactiae subsp. equisimilis NADase-streptolysin O operon (secE, nusG, nga, orf1, slo), partial and complete cds Length = 6753 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 675 atcaatggtatattcaaaatcacag 699 ||||||||||||||| ||||||||| Sbjct: 4535 atcaatggtatattctaaatcacag 4559
>dbj|AB050249.1| Streptococcus dysgalactiae subsp. equisimilis slo gene for streptolysin O, complete cds Length = 1920 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 675 atcaatggtatattcaaaatcacag 699 ||||||||||||||| ||||||||| Sbjct: 960 atcaatggtatattctaaatcacag 984
>dbj|AP006670.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT39I14, TM0368b, complete sequence Length = 48760 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 737 gcagaggattctgaaattctt 757 ||||||||||||||||||||| Sbjct: 17364 gcagaggattctgaaattctt 17384
>dbj|D16825.1|STRSOGENE Streptococcus canis gene for streptolysin O, complete cds Length = 1732 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 675 atcaatggtatattcaaaatcacag 699 ||||||||||||||| ||||||||| Sbjct: 774 atcaatggtatattctaaatcacag 798
>dbj|D16824.1|STRO Streptococcus equisimilis gene for streptolysin O, complete cds Length = 1744 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 675 atcaatggtatattcaaaatcacag 699 ||||||||||||||| ||||||||| Sbjct: 786 atcaatggtatattctaaatcacag 810 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,342,958 Number of Sequences: 3902068 Number of extensions: 7342958 Number of successful extensions: 149422 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 149291 Number of HSP's gapped (non-prelim): 131 length of query: 771 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 748 effective length of database: 17,143,297,704 effective search space: 12823186682592 effective search space used: 12823186682592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)