ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9l21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_477178.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.17
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.17
3dbj|AP005774.5| Oryza sativa (japonica cultivar-group) genomic D... 46 0.17
4dbj|AP005764.5| Oryza sativa (japonica cultivar-group) genomic D... 46 0.17
5gb|AC159816.2| Mus musculus BAC clone RP23-321A19 from chromosom... 44 0.68
6gb|AC162180.2| Mus musculus BAC clone RP23-126K16 from chromosom... 44 0.68
7emb|CR762483.10| Zebrafish DNA sequence from clone DKEY-112K13 i... 44 0.68
8gb|CP000017.1| Streptococcus pyogenes MGAS5005, complete genome 42 2.7
9gb|CP000261.1| Streptococcus pyogenes MGAS2096, complete genome 42 2.7
10gb|CP000259.1| Streptococcus pyogenes MGAS9429, complete genome 42 2.7
11gb|AC107882.3| Homo sapiens chromosome 11, clone CTD-2019O4, com... 42 2.7
12gb|AC009989.12| Homo sapiens chromosome 10 clone RP11-7P17, comp... 42 2.7
13gb|AC107886.2| Homo sapiens chromosome 11, clone CTD-3064C13, co... 42 2.7
14gb|AC010545.9| Homo sapiens chromosome 16 clone RP11-449H11, com... 42 2.7
15dbj|AB128035.1| Streptococcus dysgalactiae subsp. equisimilis NA... 42 2.7
16dbj|AB050249.1| Streptococcus dysgalactiae subsp. equisimilis sl... 42 2.7
17dbj|AP006670.1| Lotus japonicus genomic DNA, chromosome 2, clone... 42 2.7
18dbj|D16825.1|STRSOGENE Streptococcus canis gene for streptolysin... 42 2.7
19dbj|D16824.1|STRO Streptococcus equisimilis gene for streptolysi... 42 2.7

>ref|XM_477178.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1326

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 217  ttacaactcaatgacaataggggagtttgtcagatcaataatc 259
            ||||||||| |||||||| || ||| |||||||||||| ||||
Sbjct: 1326 ttacaactcgatgacaattggtgagcttgtcagatcaacaatc 1284



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                          
Query: 217     ttacaactcaatgacaataggggagtttgtcagatcaataatc 259
               ||||||||| |||||||| || ||| |||||||||||| ||||
Sbjct: 7290890 ttacaactcgatgacaattggtgagcttgtcagatcaacaatc 7290932



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>dbj|AP005774.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0086N05
          Length = 163670

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                        
Query: 217   ttacaactcaatgacaataggggagtttgtcagatcaataatc 259
             ||||||||| |||||||| || ||| |||||||||||| ||||
Sbjct: 17571 ttacaactcgatgacaattggtgagcttgtcagatcaacaatc 17613



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>dbj|AP005764.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0016A21
          Length = 144076

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                         
Query: 217    ttacaactcaatgacaataggggagtttgtcagatcaataatc 259
              ||||||||| |||||||| || ||| |||||||||||| ||||
Sbjct: 131374 ttacaactcgatgacaattggtgagcttgtcagatcaacaatc 131416



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>gb|AC159816.2| Mus musculus BAC clone RP23-321A19 from chromosome 9, complete
            sequence
          Length = 191274

 Score = 44.1 bits (22), Expect = 0.68
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 205  tccagcaaagcattacaactca 226
            ||||||||||||||||||||||
Sbjct: 3292 tccagcaaagcattacaactca 3271



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>gb|AC162180.2| Mus musculus BAC clone RP23-126K16 from chromosome 9, complete sequence
          Length = 226160

 Score = 44.1 bits (22), Expect = 0.68
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 205    tccagcaaagcattacaactca 226
              ||||||||||||||||||||||
Sbjct: 165265 tccagcaaagcattacaactca 165244



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>emb|CR762483.10| Zebrafish DNA sequence from clone DKEY-112K13 in linkage group 13,
             complete sequence
          Length = 79283

 Score = 44.1 bits (22), Expect = 0.68
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 23    attatttatcataaaacaacaa 44
             ||||||||||||||||||||||
Sbjct: 33271 attatttatcataaaacaacaa 33292



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>gb|CP000017.1| Streptococcus pyogenes MGAS5005, complete genome
          Length = 1838554

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 675    atcaatggtatattcaaaatcacag 699
              ||||||||||||||| |||||||||
Sbjct: 152793 atcaatggtatattctaaatcacag 152817



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>gb|CP000261.1| Streptococcus pyogenes MGAS2096, complete genome
          Length = 1860355

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 675    atcaatggtatattcaaaatcacag 699
              ||||||||||||||| |||||||||
Sbjct: 158028 atcaatggtatattctaaatcacag 158052



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>gb|CP000259.1| Streptococcus pyogenes MGAS9429, complete genome
          Length = 1836467

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 675    atcaatggtatattcaaaatcacag 699
              ||||||||||||||| |||||||||
Sbjct: 158075 atcaatggtatattctaaatcacag 158099



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>gb|AC107882.3| Homo sapiens chromosome 11, clone CTD-2019O4, complete sequence
          Length = 130916

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 27    tttatcataaaacaacaagaa 47
             |||||||||||||||||||||
Sbjct: 57428 tttatcataaaacaacaagaa 57448



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>gb|AC009989.12| Homo sapiens chromosome 10 clone RP11-7P17, complete sequence
          Length = 175690

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 368   cctgccttcaacactggagat 388
             |||||||||||||||||||||
Sbjct: 98826 cctgccttcaacactggagat 98806



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>gb|AC107886.2| Homo sapiens chromosome 11, clone CTD-3064C13, complete sequence
          Length = 133892

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 27    tttatcataaaacaacaagaa 47
             |||||||||||||||||||||
Sbjct: 13651 tttatcataaaacaacaagaa 13631



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>gb|AC010545.9| Homo sapiens chromosome 16 clone RP11-449H11, complete sequence
          Length = 170517

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 368   cctgccttcaacactggagat 388
             |||||||||||||||||||||
Sbjct: 21347 cctgccttcaacactggagat 21327



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>dbj|AB128035.1| Streptococcus dysgalactiae subsp. equisimilis NADase-streptolysin O
            operon (secE, nusG, nga, orf1, slo), partial and complete
            cds
          Length = 6753

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 675  atcaatggtatattcaaaatcacag 699
            ||||||||||||||| |||||||||
Sbjct: 4535 atcaatggtatattctaaatcacag 4559



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>dbj|AB050249.1| Streptococcus dysgalactiae subsp. equisimilis slo gene for
           streptolysin O, complete cds
          Length = 1920

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 675 atcaatggtatattcaaaatcacag 699
           ||||||||||||||| |||||||||
Sbjct: 960 atcaatggtatattctaaatcacag 984



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>dbj|AP006670.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT39I14, TM0368b,
             complete sequence
          Length = 48760

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 737   gcagaggattctgaaattctt 757
             |||||||||||||||||||||
Sbjct: 17364 gcagaggattctgaaattctt 17384



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>dbj|D16825.1|STRSOGENE Streptococcus canis gene for streptolysin O, complete cds
          Length = 1732

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 675 atcaatggtatattcaaaatcacag 699
           ||||||||||||||| |||||||||
Sbjct: 774 atcaatggtatattctaaatcacag 798



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>dbj|D16824.1|STRO Streptococcus equisimilis gene for streptolysin O, complete cds
          Length = 1744

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 675 atcaatggtatattcaaaatcacag 699
           ||||||||||||||| |||||||||
Sbjct: 786 atcaatggtatattctaaatcacag 810


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,342,958
Number of Sequences: 3902068
Number of extensions: 7342958
Number of successful extensions: 149422
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 149291
Number of HSP's gapped (non-prelim): 131
length of query: 771
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 748
effective length of database: 17,143,297,704
effective search space: 12823186682592
effective search space used: 12823186682592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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