>JHD2B_HUMAN (Q7LBC6) JmjC domain-containing histone demethylation protein 2B (EC|
            1.14.11.-) (Jumonji domain-containing protein 1B)
            (Nuclear protein 5qNCA)
          Length = 1761

 Score = 33.5 bits (75), Expect = 0.54
 Identities = 21/63 (33%), Positives = 31/63 (49%)
 Frame = -3

Query: 537  GSSSFVKMVQSTVQLALDFLLPESLWESARMGQEIRCLPNHHDAKLKMLEVGKISLYAAS 358
            G+   V  + S +++A DF+ PE +    R+ QE R L N H      L+V  I  +A  
Sbjct: 1686 GAPHQVHNLYSCIKVAEDFVSPEHVKHCFRLTQEFRHLSNTHTNHEDKLQVKNIIYHAVK 1745

Query: 357  SAV 349
             AV
Sbjct: 1746 DAV 1748

>JHD2B_MOUSE (Q6ZPY7) JmjC domain-containing histone demethylation protein 2B (EC|
            1.14.11.-) (Jumonji domain-containing protein 1B)
          Length = 1562

 Score = 33.5 bits (75), Expect = 0.54
 Identities = 21/63 (33%), Positives = 31/63 (49%)
 Frame = -3

Query: 537  GSSSFVKMVQSTVQLALDFLLPESLWESARMGQEIRCLPNHHDAKLKMLEVGKISLYAAS 358
            G+   V  + S +++A DF+ PE +    R+ QE R L N H      L+V  I  +A  
Sbjct: 1487 GAPHQVHNLYSCIKVAEDFVSPEHVKHCFRLTQEFRHLSNTHTNHEDKLQVKNIIYHAVK 1546

Query: 357  SAV 349
             AV
Sbjct: 1547 DAV 1549

>JHD2C_HUMAN (Q15652) Probable JmjC domain-containing histone demethylation|
            protein 2C (EC 1.14.11.-) (Jumonji domain-containing
            protein 1C) (Thyroid receptor-interacting protein 8)
            (TRIP-8)
          Length = 2540

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = -3

Query: 537  GSSSFVKMVQSTVQLALDFLLPESLWESARMGQEIRCLPN--HHDAKLKMLEVGKISLYA 364
            G+   V+   S +Q+  DF+ PE L ES  + QE+R L    ++D K   L+V  I  +A
Sbjct: 2463 GALHQVQNFHSCIQVTEDFVSPEHLVESFHLTQELRLLKEEINYDDK---LQVKNILYHA 2519

Query: 363  ASSAVKEIQ 337
                V+ ++
Sbjct: 2520 VKEMVRALK 2528

>JHD2C_MOUSE (Q69ZK6) Probable JmjC domain-containing histone demethylation|
            protein 2C (EC 1.14.11.-) (Jumonji domain-containing
            protein 1C)
          Length = 2350

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = -3

Query: 537  GSSSFVKMVQSTVQLALDFLLPESLWESARMGQEIRCLPN--HHDAKLKMLEVGKISLYA 364
            G+   V+   S VQ+  DF+ PE L +S  + QE+R L    ++D K   L+V  I  +A
Sbjct: 2273 GTLHQVQNFHSCVQVTEDFVSPEHLVQSFHLTQELRLLKEEINYDDK---LQVKNILYHA 2329

Query: 363  ASSAVKEIQ 337
                V+ ++
Sbjct: 2330 VKEMVRALK 2338

>OPS4_CANAL (P46596) Opaque-phase-specific protein OP4 precursor|
          Length = 402

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = -3

Query: 552 STV*NGSSSFVKMVQSTVQLAL--DFLLPESLWESARMGQEIRCLPNHHDAKLKMLEVGK 379
           +TV + S S   +++S +Q A+     L +++W S  +G     L N  D +  +L+VGK
Sbjct: 94  TTVPSISDSLSNIIKSAIQGAIVQGGALIQAVWNSGLLGDVFNKLINDTDLRQALLDVGK 153

Query: 378 ISLYAASSAV 349
               +A++ +
Sbjct: 154 ALFNSAANLI 163

>CDC16_HUMAN (Q13042) Cell division cycle protein 16 homolog (CDC16Hs) (Anaphase|
           promoting complex subunit 6) (APC6) (Cyclosome subunit
           6)
          Length = 620

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = -1

Query: 623 KKSPGMLLVILCHLIAILNLTLDDLLFEMVHRLLLKWFSLRFSWLLIFCCLRVCGSRLEW 444
           +K P     +  H+  ++ L   + LF + H+L+  + S   SW  + C   + G + E 
Sbjct: 259 EKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEH 318

Query: 443 AKRY 432
           A+RY
Sbjct: 319 ARRY 322


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,738,299
Number of Sequences: 219361
Number of extensions: 1550637
Number of successful extensions: 3884
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3880
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)