ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9l17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 147 5e-32
2gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare str... 147 5e-32
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 147 5e-32
4gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome... 147 5e-32
5gb|AC161241.18| Medicago truncatula clone mth2-193c3, complete s... 48 0.035
6ref|XM_629806.1| Dictyostelium discoideum hypothetical protein (... 42 2.2
7gb|AC091094.2| Felis catus clone RP86-317G18, complete sequence 42 2.2
8gb|AC091382.3| Felis catus clone RP86-264L24, complete sequence 42 2.2
9gb|AC116557.30| Mus musculus strain C57BL/6J clone rp23-239f10 m... 42 2.2
10gb|AC125518.3| Mus musculus BAC clone RP24-267E6 from chromosome... 42 2.2
11ref|XM_799716.1| Trypanosoma cruzi strain CL Brener DNA-directed... 42 2.2
12gb|AC157984.17| Medicago truncatula clone mth2-142a1, complete s... 42 2.2
13gb|AC104334.2| Homo sapiens chromosome 1 clone RP11-411H5, compl... 42 2.2
14gb|AC087385.5| Homo sapiens chromosome 15, clone RP11-745A24, co... 42 2.2
15gb|AC015766.9| Homo sapiens chromosome 18, clone RP11-1P16, comp... 42 2.2
16gb|AC092093.34| Mus musculus strain C57BL/6J chromosome 10 clone... 42 2.2
17gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone... 42 2.2
18emb|AL663048.12| Mouse DNA sequence from clone RP23-166N12 on ch... 42 2.2
19gb|AC113901.7| Rattus norvegicus 2 BAC CH230-328F5 (Children's H... 40 8.6
20gb|AC146030.3| Pan troglodytes BAC clone RP43-124E21 from chromo... 40 8.6
21gb|AY448010.1|AY448010S1 Ipomoea trifida haplotype S1 self-incom... 40 8.6
22gb|AC113014.9| Mus musculus chromosome 10, clone RP23-174O18, co... 40 8.6
23ref|XM_811748.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 8.6
24gb|AC122829.4| Mus musculus BAC clone RP23-224F12 from 10, compl... 40 8.6
25ref|XM_725074.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 8.6
26emb|AL358853.22| Human DNA sequence from clone RP11-27F3 on chro... 40 8.6
27emb|AL137855.10| Human DNA sequence from clone RP5-1064J9 on chr... 40 8.6
28emb|AL023704.2|SPCC553 S.pombe chromosome III cosmid c553 40 8.6
29gb|AC147890.2| Xenopus tropicalis clone CH216-168J11, complete s... 40 8.6
30gb|AC158928.6| Mus musculus chromosome 1, clone RP23-228O9, comp... 40 8.6
31gb|AC103619.12| Mus musculus chromosome 1, clone RP24-217I23, co... 40 8.6
32gb|AC097533.2| Homo sapiens BAC clone RP11-770K15 from 4, comple... 40 8.6
33gb|AC103805.7| Homo sapiens chromosome 18, clone RP11-1061K3, co... 40 8.6
34gb|AC153379.1| Mus musculus 10 BAC RP23-230J20 (Roswell Park Can... 40 8.6
35gb|AC004893.1|AC004893 Homo sapiens PAC clone RP4-808A1 from 7q2... 40 8.6
36gb|AC122362.5| Mus musculus BAC clone RP23-430N1 from chromosome... 40 8.6
37gb|AC129199.3| Mus musculus BAC clone RP24-220I4 from 7, complet... 40 8.6
38gb|AC155637.4| Mus musculus 10 BAC RP24-227O16 (Roswell Park Can... 40 8.6
39emb|AL806519.12| Mouse DNA sequence from clone RP23-172A2 on chr... 40 8.6
40gb|AC132954.4| Mus musculus BAC clone RP24-210F23 from 12, compl... 40 8.6
41gb|AC122201.4| Mus musculus BAC clone RP23-64I9 from 6, complete... 40 8.6
42emb|AL845504.8| Mouse DNA sequence from clone RP23-297M18 on chr... 40 8.6
43emb|AL607030.15| Mouse DNA sequence from clone RP23-304O12 on ch... 40 8.6
44emb|AL672106.9| Mouse DNA sequence from clone RP23-372E6 on chro... 40 8.6 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  147 bits (74), Expect = 5e-32
 Identities = 119/134 (88%)
 Strand = Plus / Minus

                                                                            
Query: 386      acctcgagcatcttcagttttgcatcatgatgatttggcaggcagcgtatctcttggccc 445
                ||||||||||||||||||||||||||||||| |||||| |||||||| ||||| ||| ||
Sbjct: 12926231 acctcgagcatcttcagttttgcatcatgatcatttggtaggcagcgaatctcctgggcc 12926172

                                                                            
Query: 446      attcgagccgactcccacaaactctcaggcaacaaaaaatcaagagccaactgaaccgta 505
                ||||| |||||||||| |||||| || ||  |||  |||||||||||||| |||||||||
Sbjct: 12926171 attcgggccgactcccccaaactttccggtgacaggaaatcaagagccaattgaaccgta 12926112

                              
Query: 506      gactgaaccatttt 519
                ||||||| ||||||
Sbjct: 12926111 gactgaaacatttt 12926098



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 62/70 (88%)
 Strand = Plus / Minus

                                                                            
Query: 315      acttgggatcgagagttattttctgaatttctttgacggcggaacttgctgcatataaag 374
                ||||||||||||| |||||| ||||||||||| |||| || ||||| |||||||||||||
Sbjct: 12926395 acttgggatcgagggttattctctgaatttctctgacagcagaactagctgcatataaag 12926336

                          
Query: 375      atatctttcc 384
                | || |||||
Sbjct: 12926335 agatttttcc 12926326



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 54/60 (90%)
 Strand = Plus / Minus

                                                                            
Query: 235      ccgttgtttagtgactctagccaagttctctgaaactgcccgggttaggttctgatcctc 294
                ||||||||| |||||||||||||||||||| ||||| ||| | ||||| |||||||||||
Sbjct: 12926668 ccgttgtttggtgactctagccaagttctcagaaaccgcctgagttagattctgatcctc 12926609



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 42       tgttgacatgagcacagccgttagtccta 70
                |||| |||||||| |||||||||||||||
Sbjct: 12926842 tgtttacatgagctcagccgttagtccta 12926814
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>gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0094H06, from chromosome 3, complete sequence
          Length = 118075

 Score =  147 bits (74), Expect = 5e-32
 Identities = 119/134 (88%)
 Strand = Plus / Plus

                                                                         
Query: 386   acctcgagcatcttcagttttgcatcatgatgatttggcaggcagcgtatctcttggccc 445
             ||||||||||||||||||||||||||||||| |||||| |||||||| ||||| ||| ||
Sbjct: 13278 acctcgagcatcttcagttttgcatcatgatcatttggtaggcagcgaatctcctgggcc 13337

                                                                         
Query: 446   attcgagccgactcccacaaactctcaggcaacaaaaaatcaagagccaactgaaccgta 505
             ||||| |||||||||| |||||| || ||  |||  |||||||||||||| |||||||||
Sbjct: 13338 attcgggccgactcccccaaactttccggtgacaggaaatcaagagccaattgaaccgta 13397

                           
Query: 506   gactgaaccatttt 519
             ||||||| ||||||
Sbjct: 13398 gactgaaacatttt 13411



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 62/70 (88%)
 Strand = Plus / Plus

                                                                         
Query: 315   acttgggatcgagagttattttctgaatttctttgacggcggaacttgctgcatataaag 374
             ||||||||||||| |||||| ||||||||||| |||| || ||||| |||||||||||||
Sbjct: 13114 acttgggatcgagggttattctctgaatttctctgacagcagaactagctgcatataaag 13173

                       
Query: 375   atatctttcc 384
             | || |||||
Sbjct: 13174 agatttttcc 13183



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 54/60 (90%)
 Strand = Plus / Plus

                                                                         
Query: 235   ccgttgtttagtgactctagccaagttctctgaaactgcccgggttaggttctgatcctc 294
             ||||||||| |||||||||||||||||||| ||||| ||| | ||||| |||||||||||
Sbjct: 12841 ccgttgtttggtgactctagccaagttctcagaaaccgcctgagttagattctgatcctc 12900



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 42    tgttgacatgagcacagccgttagtccta 70
             |||| |||||||| |||||||||||||||
Sbjct: 12667 tgtttacatgagctcagccgttagtccta 12695
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  147 bits (74), Expect = 5e-32
 Identities = 119/134 (88%)
 Strand = Plus / Minus

                                                                            
Query: 386      acctcgagcatcttcagttttgcatcatgatgatttggcaggcagcgtatctcttggccc 445
                ||||||||||||||||||||||||||||||| |||||| |||||||| ||||| ||| ||
Sbjct: 12922994 acctcgagcatcttcagttttgcatcatgatcatttggtaggcagcgaatctcctgggcc 12922935

                                                                            
Query: 446      attcgagccgactcccacaaactctcaggcaacaaaaaatcaagagccaactgaaccgta 505
                ||||| |||||||||| |||||| || ||  |||  |||||||||||||| |||||||||
Sbjct: 12922934 attcgggccgactcccccaaactttccggtgacaggaaatcaagagccaattgaaccgta 12922875

                              
Query: 506      gactgaaccatttt 519
                ||||||| ||||||
Sbjct: 12922874 gactgaaacatttt 12922861



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 62/70 (88%)
 Strand = Plus / Minus

                                                                            
Query: 315      acttgggatcgagagttattttctgaatttctttgacggcggaacttgctgcatataaag 374
                ||||||||||||| |||||| ||||||||||| |||| || ||||| |||||||||||||
Sbjct: 12923158 acttgggatcgagggttattctctgaatttctctgacagcagaactagctgcatataaag 12923099

                          
Query: 375      atatctttcc 384
                | || |||||
Sbjct: 12923098 agatttttcc 12923089



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 54/60 (90%)
 Strand = Plus / Minus

                                                                            
Query: 235      ccgttgtttagtgactctagccaagttctctgaaactgcccgggttaggttctgatcctc 294
                ||||||||| |||||||||||||||||||| ||||| ||| | ||||| |||||||||||
Sbjct: 12923431 ccgttgtttggtgactctagccaagttctcagaaaccgcctgagttagattctgatcctc 12923372



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 42       tgttgacatgagcacagccgttagtccta 70
                |||| |||||||| |||||||||||||||
Sbjct: 12923605 tgtttacatgagctcagccgttagtccta 12923577
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>gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBa0006D11, complete sequence
          Length = 176637

 Score =  147 bits (74), Expect = 5e-32
 Identities = 119/134 (88%)
 Strand = Plus / Minus

                                                                        
Query: 386  acctcgagcatcttcagttttgcatcatgatgatttggcaggcagcgtatctcttggccc 445
            ||||||||||||||||||||||||||||||| |||||| |||||||| ||||| ||| ||
Sbjct: 3929 acctcgagcatcttcagttttgcatcatgatcatttggtaggcagcgaatctcctgggcc 3870

                                                                        
Query: 446  attcgagccgactcccacaaactctcaggcaacaaaaaatcaagagccaactgaaccgta 505
            ||||| |||||||||| |||||| || ||  |||  |||||||||||||| |||||||||
Sbjct: 3869 attcgggccgactcccccaaactttccggtgacaggaaatcaagagccaattgaaccgta 3810

                          
Query: 506  gactgaaccatttt 519
            ||||||| ||||||
Sbjct: 3809 gactgaaacatttt 3796



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 62/70 (88%)
 Strand = Plus / Minus

                                                                        
Query: 315  acttgggatcgagagttattttctgaatttctttgacggcggaacttgctgcatataaag 374
            ||||||||||||| |||||| ||||||||||| |||| || ||||| |||||||||||||
Sbjct: 4093 acttgggatcgagggttattctctgaatttctctgacagcagaactagctgcatataaag 4034

                      
Query: 375  atatctttcc 384
            | || |||||
Sbjct: 4033 agatttttcc 4024



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 54/60 (90%)
 Strand = Plus / Minus

                                                                        
Query: 235  ccgttgtttagtgactctagccaagttctctgaaactgcccgggttaggttctgatcctc 294
            ||||||||| |||||||||||||||||||| ||||| ||| | ||||| |||||||||||
Sbjct: 4366 ccgttgtttggtgactctagccaagttctcagaaaccgcctgagttagattctgatcctc 4307



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 42   tgttgacatgagcacagccgttagtccta 70
            |||| |||||||| |||||||||||||||
Sbjct: 4540 tgtttacatgagctcagccgttagtccta 4512
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>gb|AC161241.18| Medicago truncatula clone mth2-193c3, complete sequence
          Length = 125129

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 334   tttctgaatttctttgacggcggaacttgctgcatataaagatatctt 381
             |||||||| ||||||||  || |||||||||||||| | |||||||||
Sbjct: 94753 tttctgaacttctttgattgctgaacttgctgcataaagagatatctt 94706
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>ref|XM_629806.1| Dictyostelium discoideum hypothetical protein (DDB0184202), partial
            mRNA
          Length = 2637

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 331  tattttctgaatttctttgac 351
            |||||||||||||||||||||
Sbjct: 2446 tattttctgaatttctttgac 2426
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>gb|AC091094.2| Felis catus clone RP86-317G18, complete sequence
          Length = 134762

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 22   attgctcaacatattattttt 42
            |||||||||||||||||||||
Sbjct: 9847 attgctcaacatattattttt 9827
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>gb|AC091382.3| Felis catus clone RP86-264L24, complete sequence
          Length = 128743

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 22    attgctcaacatattattttt 42
             |||||||||||||||||||||
Sbjct: 85883 attgctcaacatattattttt 85863
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>gb|AC116557.30| Mus musculus strain C57BL/6J clone rp23-239f10 map 8, complete sequence
          Length = 232571

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 39    ttttgttgacatgagcacagc 59
             |||||||||||||||||||||
Sbjct: 93781 ttttgttgacatgagcacagc 93761
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>gb|AC125518.3| Mus musculus BAC clone RP24-267E6 from chromosome 1, complete sequence
          Length = 174190

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 533    gaaccatttcaaacagtagat 553
              |||||||||||||||||||||
Sbjct: 155056 gaaccatttcaaacagtagat 155036
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>ref|XM_799716.1| Trypanosoma cruzi strain CL Brener DNA-directed RNA polymerase II
            subunit 2 (Tc00.1047053509951.49) partial mRNA
          Length = 1850

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 519  taacaaaagacgatgaaccat 539
            |||||||||||||||||||||
Sbjct: 1161 taacaaaagacgatgaaccat 1141
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>gb|AC157984.17| Medicago truncatula clone mth2-142a1, complete sequence
          Length = 122915

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 32    atattatttttgttgacatga 52
             |||||||||||||||||||||
Sbjct: 83607 atattatttttgttgacatga 83587
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>gb|AC104334.2| Homo sapiens chromosome 1 clone RP11-411H5, complete sequence
          Length = 129880

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 282   ggttctgatcctcaaatctga 302
             |||||||||||||||||||||
Sbjct: 44673 ggttctgatcctcaaatctga 44653
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>gb|AC087385.5| Homo sapiens chromosome 15, clone RP11-745A24, complete sequence
          Length = 190890

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 33     tattatttttgttgacatgag 53
              |||||||||||||||||||||
Sbjct: 102073 tattatttttgttgacatgag 102093
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>gb|AC015766.9| Homo sapiens chromosome 18, clone RP11-1P16, complete sequence
          Length = 153781

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 592    aaaatcactagaagcatacct 612
              |||||||||||||||||||||
Sbjct: 120680 aaaatcactagaagcatacct 120700
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>gb|AC092093.34| Mus musculus strain C57BL/6J chromosome 10 clone rp23-168o8, complete
              sequence
          Length = 200124

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 515    attttaacaaaagacgatgaa 535
              |||||||||||||||||||||
Sbjct: 161435 attttaacaaaagacgatgaa 161415
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>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
             sequence
          Length = 230848

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 515   attttaacaaaagacgatgaa 535
             |||||||||||||||||||||
Sbjct: 70085 attttaacaaaagacgatgaa 70065
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>emb|AL663048.12| Mouse DNA sequence from clone RP23-166N12 on chromosome X, complete
            sequence
          Length = 234817

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 29   aacatattatttttgttgaca 49
            |||||||||||||||||||||
Sbjct: 5256 aacatattatttttgttgaca 5236
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>gb|AC113901.7| Rattus norvegicus 2 BAC CH230-328F5 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 157435

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 310    attaaacttgggatcgagag 329
              ||||||||||||||||||||
Sbjct: 135830 attaaacttgggatcgagag 135811
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>gb|AC146030.3| Pan troglodytes BAC clone RP43-124E21 from chromosome 7, complete
            sequence
          Length = 169275

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 329  gttattttctgaatttcttt 348
            ||||||||||||||||||||
Sbjct: 7527 gttattttctgaatttcttt 7546
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>gb|AY448010.1|AY448010S1 Ipomoea trifida haplotype S1 self-incompatibility (S-) locus, contig
             SR1
          Length = 82054

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 536   ccatttcaaacagtagatca 555
             ||||||||||||||||||||
Sbjct: 72481 ccatttcaaacagtagatca 72500
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>gb|AC113014.9| Mus musculus chromosome 10, clone RP23-174O18, complete sequence
          Length = 187065

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    ttgttgacatgagcacagcc 60
             ||||||||||||||||||||
Sbjct: 18563 ttgttgacatgagcacagcc 18544
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>ref|XM_811748.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053504109.120) partial mRNA
          Length = 936

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 538 atttcaaacagtagatcatccaaa 561
           ||||||||||| ||||||||||||
Sbjct: 218 atttcaaacaggagatcatccaaa 195
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>gb|AC122829.4| Mus musculus BAC clone RP23-224F12 from 10, complete sequence
          Length = 155915

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     ttgtaatgttgtaattgctc 28
             ||||||||||||||||||||
Sbjct: 20333 ttgtaatgttgtaattgctc 20352
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>ref|XM_725074.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY02295)
            partial mRNA
          Length = 2100

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  gttattttctgaatttcttt 348
            ||||||||||||||||||||
Sbjct: 2076 gttattttctgaatttcttt 2057
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>emb|AL358853.22| Human DNA sequence from clone RP11-27F3 on chromosome 1 Contains part
             of the SLICK gene for a sodium- and chloride-activated
             ATP-sensitive potassium channel, complete sequence
          Length = 60049

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 326   agagttattttctgaatttc 345
             ||||||||||||||||||||
Sbjct: 31549 agagttattttctgaatttc 31568
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>emb|AL137855.10| Human DNA sequence from clone RP5-1064J9 on chromosome 1p32.2-33,
             complete sequence
          Length = 106970

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 329   gttattttctgaatttcttt 348
             ||||||||||||||||||||
Sbjct: 70101 gttattttctgaatttcttt 70120
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>emb|AL023704.2|SPCC553 S.pombe chromosome III cosmid c553
          Length = 31975

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 158  atttgctatatctactttacatgg 181
            ||||||| ||||||||||||||||
Sbjct: 7291 atttgctctatctactttacatgg 7268
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>gb|AC147890.2| Xenopus tropicalis clone CH216-168J11, complete sequence
          Length = 152053

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 612   tggagattttttacttggaa 631
             ||||||||||||||||||||
Sbjct: 27090 tggagattttttacttggaa 27071
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>gb|AC158928.6| Mus musculus chromosome 1, clone RP23-228O9, complete sequence
          Length = 179146

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 328   agttattttctgaatttctt 347
             ||||||||||||||||||||
Sbjct: 56979 agttattttctgaatttctt 56960
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>gb|AC103619.12| Mus musculus chromosome 1, clone RP24-217I23, complete sequence
          Length = 152116

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 328    agttattttctgaatttctt 347
              ||||||||||||||||||||
Sbjct: 145774 agttattttctgaatttctt 145793
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>gb|AC097533.2| Homo sapiens BAC clone RP11-770K15 from 4, complete sequence
          Length = 174696

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 110   gaattgtgaatgtgttcctt 129
             ||||||||||||||||||||
Sbjct: 20137 gaattgtgaatgtgttcctt 20156
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>gb|AC103805.7| Homo sapiens chromosome 18, clone RP11-1061K3, complete sequence
          Length = 184147

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   aatttgctatatctacttta 176
             ||||||||||||||||||||
Sbjct: 43429 aatttgctatatctacttta 43448
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>gb|AC153379.1| Mus musculus 10 BAC RP23-230J20 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 174195

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      ttgtaatgttgtaattgctc 28
              ||||||||||||||||||||
Sbjct: 170549 ttgtaatgttgtaattgctc 170568
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>gb|AC004893.1|AC004893 Homo sapiens PAC clone RP4-808A1 from 7q21.1-q31.1, complete sequence
          Length = 103738

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 329   gttattttctgaatttcttt 348
             ||||||||||||||||||||
Sbjct: 83989 gttattttctgaatttcttt 84008
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>gb|AC122362.5| Mus musculus BAC clone RP23-430N1 from chromosome 6, complete sequence
          Length = 212275

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   gttttgcatcatgatgattt 421
             ||||||||||||||||||||
Sbjct: 90778 gttttgcatcatgatgattt 90797
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>gb|AC129199.3| Mus musculus BAC clone RP24-220I4 from 7, complete sequence
          Length = 159262

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    ttgttgacatgagcacagcc 60
             ||||||||||||||||||||
Sbjct: 47653 ttgttgacatgagcacagcc 47634
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>gb|AC155637.4| Mus musculus 10 BAC RP24-227O16 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 159189

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 41     ttgttgacatgagcacagcc 60
              ||||||||||||||||||||
Sbjct: 146527 ttgttgacatgagcacagcc 146508
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>emb|AL806519.12| Mouse DNA sequence from clone RP23-172A2 on chromosome X, complete
             sequence
          Length = 140519

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    ttgttgacatgagcacagcc 60
             ||||||||||||||||||||
Sbjct: 76362 ttgttgacatgagcacagcc 76343
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>gb|AC132954.4| Mus musculus BAC clone RP24-210F23 from 12, complete sequence
          Length = 160118

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 330   ttattttctgaatttctttg 349
             ||||||||||||||||||||
Sbjct: 45267 ttattttctgaatttctttg 45248
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>gb|AC122201.4| Mus musculus BAC clone RP23-64I9 from 6, complete sequence
          Length = 239994

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 402  gttttgcatcatgatgattt 421
            ||||||||||||||||||||
Sbjct: 5362 gttttgcatcatgatgattt 5343
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>emb|AL845504.8| Mouse DNA sequence from clone RP23-297M18 on chromosome 2, complete
             sequence
          Length = 160295

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    ttgttgacatgagcacagcc 60
             ||||||||||||||||||||
Sbjct: 99206 ttgttgacatgagcacagcc 99187
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>emb|AL607030.15| Mouse DNA sequence from clone RP23-304O12 on chromosome 11, complete
             sequence
          Length = 189236

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    ttgttgacatgagcacagcc 60
             ||||||||||||||||||||
Sbjct: 72547 ttgttgacatgagcacagcc 72566
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>emb|AL672106.9| Mouse DNA sequence from clone RP23-372E6 on chromosome X, complete
             sequence
          Length = 121764

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    caacatattatttttgttga 47
             ||||||||||||||||||||
Sbjct: 69214 caacatattatttttgttga 69195


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,360,774
Number of Sequences: 3902068
Number of extensions: 6360774
Number of successful extensions: 126321
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 126134
Number of HSP's gapped (non-prelim): 187
length of query: 632
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 609
effective length of database: 17,143,297,704
effective search space: 10440268301736
effective search space used: 10440268301736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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