ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags9l16 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009447.1| Triticum aestivum clone wlmk8.pk0015.h6:fis, full insert mRNA sequence Length = 1206 Score = 793 bits (400), Expect = 0.0 Identities = 569/624 (91%), Gaps = 1/624 (0%) Strand = Plus / Minus Query: 68 cgccgccgtcatacagttattcctagttggacgcaagaccacctgcgcctgtcttattgc 127 |||| |||||||||| ||| |||||||||||| || | ||||||||||||||||||||| Sbjct: 953 cgccaccgtcatacaattaatcctagttggactcagaatcacctgcgcctgtcttattgc 894 Query: 128 gacaaacatccgcgagtttccgcggcagactgactaacagtagaccagtgatatgacctt 187 ||||||||||||| |||||||||||| ||||||||| | |||||| |||||| | |||| Sbjct: 893 gacaaacatccgcaagtttccgcggcggactgactaccgatagaccggtgatacggcctt 834 Query: 188 atggactcaggttaggctcagtgcctgaagtggcggacgccggtgaagaggagggagaca 247 | | ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 833 aagtgctcaggttaggctcagtgcctgaagtggcggacgccggtgaagaggagggacacg 774 Query: 248 ccgtacttgttgcagcactcgacggcatccttgtccctcatgctgccgccgggctgcgcg 307 |||||||| |||||||| || ||||||||||||||||||||||||||||| ||||||||| Sbjct: 773 ccgtacttattgcagcagtcaacggcatccttgtccctcatgctgccgccaggctgcgcg 714 Query: 308 atcgtaccgatgccgttctcgcatgcctcctccacggcgtccttccaggcaaatgggaag 367 ||||| |||||||||||||| || || ||||||||||| |||||||| | ||||||||| Sbjct: 713 atcgtgccgatgccgttctcacacgcttcctccacggcatccttccaagggaatgggaag 654 Query: 368 aaggcgtcgctggccagagcagctcccttggcagcctcccctgctttcctgaaggcaatc 427 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| Sbjct: 653 aaggcgtcgctggccagagcggctcccttggcggcctcccctgctttcctgaaggcgatc 594 Query: 428 ctcaagctgtccaccctgtttggctgcccgctccccatgcccagcatgcagttgtccttg 487 |||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 593 ctcaggctgtccaccctgtttggctgcccgctccccatgcccagcatgcaattatccttg 534 Query: 488 gcaatcacaatagcattgctcttcacgtgtttcgcacagagccaagcgaacttggcatcc 547 ||||||||||| || |||||||| ||||| ||| | |||||||| ||||||||||||||| Sbjct: 533 gcaatcacaatggcgttgctcttgacgtgcttcacgcagagccaggcgaacttggcatcc 474 Query: 548 gagagctcgctgtccgtcggagctctctcagaacccgtcgtgaaggtgatgtcttctggg 607 || ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 473 gatagctcactgt-cgtcggagctctctcagaacccgtcgtgaaggtgatgtcttctggg 415 Query: 608 gctagatcgtctgactcttgagctagccaaccaccattgacctgcctgagcgacagcata 667 | ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 414 gttagatcgtcggactcttgagctagccaaccaccactgacctgcctgagcgacagcatg 355 Query: 668 tttttcccgcttctcttcgcctca 691 |||| ||| |||||||| |||||| Sbjct: 354 ttttccccacttctctttgcctca 331 Score = 48.1 bits (24), Expect = 0.039 Identities = 24/24 (100%) Strand = Plus / Minus Query: 11 gccgctgctggctcagcaatgtga 34 |||||||||||||||||||||||| Sbjct: 1021 gccgctgctggctcagcaatgtga 998
>ref|XM_480615.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2107 Score = 325 bits (164), Expect = 1e-85 Identities = 407/488 (83%) Strand = Plus / Minus Query: 203 gctcagtgcctgaagtggcggacgccggtgaagaggagggagacaccgtacttgttgcag 262 ||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||| Sbjct: 1866 gctcagtgcctgaagtgcctgacgccggtgaagaggagggagacgccgtacttgttgcag 1807 Query: 263 cactcgacggcatccttgtccctcatgctgccgccgggctgcgcgatcgtaccgatgccg 322 || |||||||| || ||||||||||||||||| |||| ||||||| ||||||||| Sbjct: 1806 cagtcgacggcgtcgccgtccctcatgctgccgctcggctccgcgatcacgccgatgccg 1747 Query: 323 ttctcgcatgcctcctccacggcgtccttccaggcaaatgggaagaaggcgtcgctggcc 382 |||| ||| ||||||||||||||||| ||||| || ||||||||||| || || |||||| Sbjct: 1746 ttctggcacgcctcctccacggcgtcgttccaagcgaatgggaagaatgcatcactggcc 1687 Query: 383 agagcagctcccttggcagcctcccctgctttcctgaaggcaatcctcaagctgtccacc 442 | ||||||||| ||||| |||| |||||||||||||| ||||| |||| || |||| Sbjct: 1686 aaagcagctcctttggcctcctctcctgctttcctgaaagcaattctcagactctccagt 1627 Query: 443 ctgtttggctgcccgctccccatgcccagcatgcagttgtccttggcaatcacaatagca 502 ||||||||||| || || |||||||| | ||||||||| | |||||| |||||||| || Sbjct: 1626 ctgtttggctggccacttcccatgcctaacatgcagttattcttggctatcacaatggcg 1567 Query: 503 ttgctcttcacgtgtttcgcacagagccaagcgaacttggcatccgagagctcgctgtcc 562 || ||||| ||||| || |||| ||||| || || |||||||| |||||||| ||||| Sbjct: 1566 ttactctttacgtgctttacacaaagccaggcaaatttggcatcagagagctcactgtct 1507 Query: 563 gtcggagctctctcagaacccgtcgtgaaggtgatgtcttctggggctagatcgtctgac 622 ||||||||||| || | || ||||||||||| ||||| |||| |||||| || ||| Sbjct: 1506 tgaggagctctctcggacactgttgtgaaggtgatatcttcaggggttagatcatcagac 1447 Query: 623 tcttgagctagccaaccaccattgacctgcctgagcgacagcatatttttcccgcttctc 682 |||||||| | ||| |||||| |||| |||||||| || ||||| ||| || |||||| Sbjct: 1446 tcttgagccaaccagccaccactgacttgcctgagtgatagcatcccttttccacttctc 1387 Query: 683 ttcgcctc 690 |||||||| Sbjct: 1386 ttcgcctc 1379
>ref|XM_480614.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2107 Score = 325 bits (164), Expect = 1e-85 Identities = 407/488 (83%) Strand = Plus / Minus Query: 203 gctcagtgcctgaagtggcggacgccggtgaagaggagggagacaccgtacttgttgcag 262 ||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||| Sbjct: 1873 gctcagtgcctgaagtgcctgacgccggtgaagaggagggagacgccgtacttgttgcag 1814 Query: 263 cactcgacggcatccttgtccctcatgctgccgccgggctgcgcgatcgtaccgatgccg 322 || |||||||| || ||||||||||||||||| |||| ||||||| ||||||||| Sbjct: 1813 cagtcgacggcgtcgccgtccctcatgctgccgctcggctccgcgatcacgccgatgccg 1754 Query: 323 ttctcgcatgcctcctccacggcgtccttccaggcaaatgggaagaaggcgtcgctggcc 382 |||| ||| ||||||||||||||||| ||||| || ||||||||||| || || |||||| Sbjct: 1753 ttctggcacgcctcctccacggcgtcgttccaagcgaatgggaagaatgcatcactggcc 1694 Query: 383 agagcagctcccttggcagcctcccctgctttcctgaaggcaatcctcaagctgtccacc 442 | ||||||||| ||||| |||| |||||||||||||| ||||| |||| || |||| Sbjct: 1693 aaagcagctcctttggcctcctctcctgctttcctgaaagcaattctcagactctccagt 1634 Query: 443 ctgtttggctgcccgctccccatgcccagcatgcagttgtccttggcaatcacaatagca 502 ||||||||||| || || |||||||| | ||||||||| | |||||| |||||||| || Sbjct: 1633 ctgtttggctggccacttcccatgcctaacatgcagttattcttggctatcacaatggcg 1574 Query: 503 ttgctcttcacgtgtttcgcacagagccaagcgaacttggcatccgagagctcgctgtcc 562 || ||||| ||||| || |||| ||||| || || |||||||| |||||||| ||||| Sbjct: 1573 ttactctttacgtgctttacacaaagccaggcaaatttggcatcagagagctcactgtct 1514 Query: 563 gtcggagctctctcagaacccgtcgtgaaggtgatgtcttctggggctagatcgtctgac 622 ||||||||||| || | || ||||||||||| ||||| |||| |||||| || ||| Sbjct: 1513 tgaggagctctctcggacactgttgtgaaggtgatatcttcaggggttagatcatcagac 1454 Query: 623 tcttgagctagccaaccaccattgacctgcctgagcgacagcatatttttcccgcttctc 682 |||||||| | ||| |||||| |||| |||||||| || ||||| ||| || |||||| Sbjct: 1453 tcttgagccaaccagccaccactgacttgcctgagtgatagcatcccttttccacttctc 1394 Query: 683 ttcgcctc 690 |||||||| Sbjct: 1393 ttcgcctc 1386
>dbj|AK102764.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107D20, full insert sequence Length = 2106 Score = 325 bits (164), Expect = 1e-85 Identities = 407/488 (83%) Strand = Plus / Minus Query: 203 gctcagtgcctgaagtggcggacgccggtgaagaggagggagacaccgtacttgttgcag 262 ||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||| Sbjct: 1872 gctcagtgcctgaagtgcctgacgccggtgaagaggagggagacgccgtacttgttgcag 1813 Query: 263 cactcgacggcatccttgtccctcatgctgccgccgggctgcgcgatcgtaccgatgccg 322 || |||||||| || ||||||||||||||||| |||| ||||||| ||||||||| Sbjct: 1812 cagtcgacggcgtcgccgtccctcatgctgccgctcggctccgcgatcacgccgatgccg 1753 Query: 323 ttctcgcatgcctcctccacggcgtccttccaggcaaatgggaagaaggcgtcgctggcc 382 |||| ||| ||||||||||||||||| ||||| || ||||||||||| || || |||||| Sbjct: 1752 ttctggcacgcctcctccacggcgtcgttccaagcgaatgggaagaatgcatcactggcc 1693 Query: 383 agagcagctcccttggcagcctcccctgctttcctgaaggcaatcctcaagctgtccacc 442 | ||||||||| ||||| |||| |||||||||||||| ||||| |||| || |||| Sbjct: 1692 aaagcagctcctttggcctcctctcctgctttcctgaaagcaattctcagactctccagt 1633 Query: 443 ctgtttggctgcccgctccccatgcccagcatgcagttgtccttggcaatcacaatagca 502 ||||||||||| || || |||||||| | ||||||||| | |||||| |||||||| || Sbjct: 1632 ctgtttggctggccacttcccatgcctaacatgcagttattcttggctatcacaatggcg 1573 Query: 503 ttgctcttcacgtgtttcgcacagagccaagcgaacttggcatccgagagctcgctgtcc 562 || ||||| ||||| || |||| ||||| || || |||||||| |||||||| ||||| Sbjct: 1572 ttactctttacgtgctttacacaaagccaggcaaatttggcatcagagagctcactgtct 1513 Query: 563 gtcggagctctctcagaacccgtcgtgaaggtgatgtcttctggggctagatcgtctgac 622 ||||||||||| || | || ||||||||||| ||||| |||| |||||| || ||| Sbjct: 1512 tgaggagctctctcggacactgttgtgaaggtgatatcttcaggggttagatcatcagac 1453 Query: 623 tcttgagctagccaaccaccattgacctgcctgagcgacagcatatttttcccgcttctc 682 |||||||| | ||| |||||| |||| |||||||| || ||||| ||| || |||||| Sbjct: 1452 tcttgagccaaccagccaccactgacttgcctgagtgatagcatcccttttccacttctc 1393 Query: 683 ttcgcctc 690 |||||||| Sbjct: 1392 ttcgcctc 1385
>dbj|AK064336.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-G10, full insert sequence Length = 2123 Score = 325 bits (164), Expect = 1e-85 Identities = 407/488 (83%) Strand = Plus / Minus Query: 203 gctcagtgcctgaagtggcggacgccggtgaagaggagggagacaccgtacttgttgcag 262 ||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||| Sbjct: 1866 gctcagtgcctgaagtgcctgacgccggtgaagaggagggagacgccgtacttgttgcag 1807 Query: 263 cactcgacggcatccttgtccctcatgctgccgccgggctgcgcgatcgtaccgatgccg 322 || |||||||| || ||||||||||||||||| |||| ||||||| ||||||||| Sbjct: 1806 cagtcgacggcgtcgccgtccctcatgctgccgctcggctccgcgatcacgccgatgccg 1747 Query: 323 ttctcgcatgcctcctccacggcgtccttccaggcaaatgggaagaaggcgtcgctggcc 382 |||| ||| ||||||||||||||||| ||||| || ||||||||||| || || |||||| Sbjct: 1746 ttctggcacgcctcctccacggcgtcgttccaagcgaatgggaagaatgcatcactggcc 1687 Query: 383 agagcagctcccttggcagcctcccctgctttcctgaaggcaatcctcaagctgtccacc 442 | ||||||||| ||||| |||| |||||||||||||| ||||| |||| || |||| Sbjct: 1686 aaagcagctcctttggcctcctctcctgctttcctgaaagcaattctcagactctccagt 1627 Query: 443 ctgtttggctgcccgctccccatgcccagcatgcagttgtccttggcaatcacaatagca 502 ||||||||||| || || |||||||| | ||||||||| | |||||| |||||||| || Sbjct: 1626 ctgtttggctggccacttcccatgcctaacatgcagttattcttggctatcacaatggcg 1567 Query: 503 ttgctcttcacgtgtttcgcacagagccaagcgaacttggcatccgagagctcgctgtcc 562 || ||||| ||||| || |||| ||||| || || |||||||| |||||||| ||||| Sbjct: 1566 ttactctttacgtgctttacacaaagccaggcaaatttggcatcagagagctcactgtct 1507 Query: 563 gtcggagctctctcagaacccgtcgtgaaggtgatgtcttctggggctagatcgtctgac 622 ||||||||||| || | || ||||||||||| ||||| |||| |||||| || ||| Sbjct: 1506 tgaggagctctctcggacactgttgtgaaggtgatatcttcaggggttagatcatcagac 1447 Query: 623 tcttgagctagccaaccaccattgacctgcctgagcgacagcatatttttcccgcttctc 682 |||||||| | ||| |||||| |||| |||||||| || ||||| ||| || |||||| Sbjct: 1446 tcttgagccaaccagccaccactgacttgcctgagtgatagcatcccttttccacttctc 1387 Query: 683 ttcgcctc 690 |||||||| Sbjct: 1386 ttcgcctc 1379
>gb|AY104212.1| Zea mays PCO098672 mRNA sequence Length = 829 Score = 172 bits (87), Expect = 1e-39 Identities = 382/479 (79%), Gaps = 1/479 (0%) Strand = Plus / Minus Query: 213 tgaagtggcggacgccggtgaagaggagg-gagacaccgtacttgttgcagcactcgacg 271 ||||||| | ||||||||||| || || | || ||||| ||||||||||||||| | ||| Sbjct: 771 tgaagtgcctgacgccggtgaggacgaagcgacacaccatacttgttgcagcacgcaacg 712 Query: 272 gcatccttgtccctcatgctgccgccgggctgcgcgatcgtaccgatgccgttctcgcat 331 || |||| |||| || | ||||| || ||||| ||||| | ||||||||||||| ||| Sbjct: 711 gcgtcctcgtccttcttactgcctcctggctgggcgatgatgccgatgccgttctggcac 652 Query: 332 gcctcctccacggcgtccttccaggcaaatgggaagaaggcgtcgctggccagagcagct 391 |||||||| || || || ||||||||||| || ||||||||||||||||||| || ||| Sbjct: 651 gcctcctcgacagcatcattccaggcaaaaggaaagaaggcgtcgctggccaatgcggct 592 Query: 392 cccttggcagcctcccctgctttcctgaaggcaatcctcaagctgtccaccctgtttggc 451 |||||||| |||| ||||| ||||| ||||| || | | ||| || |||||| ||| Sbjct: 591 cccttggcctcctctcctgccttcctaaaggcgattcggacgctctctcgcctgttcggc 532 Query: 452 tgcccgctccccatgcccagcatgcagttgtccttggcaatcacaatagcattgctcttc 511 || || || ||||| |||||||||||||||| |||||| |||||||| || |||||||| Sbjct: 531 tgaccactgcccattcccagcatgcagttgttcttggctatcacaattgcgttgctcttg 472 Query: 512 acgtgtttcgcacagagccaagcgaacttggcatccgagagctcgctgtccgtcggagct 571 || ||||| || || ||||| || || |||||||| | |||||| | || ||||| Sbjct: 471 acatgttttgcgcaaagccaggcaaatttggcatcggcaagctcgttttcttgcggagac 412 Query: 572 ctctcagaacccgtcgtgaaggtgatgtcttctggggctagatcgtctgactcttgagct 631 |||||||| || || |||||||| ||||| |||| |||||| || ||||| |||||| Sbjct: 411 ctctcagactttgtggtaaaggtgatctcttcaggggttagatcatcagactcctgagct 352 Query: 632 agccaaccaccattgacctgcctgagcgacagcatatttttcccgcttctcttcgcctc 690 | ||| |||||| | |||||||| || || ||||| ||| || |||||||||||||| Sbjct: 351 aaccacccaccactcacctgcctaagtgaaagcatcccttttccacttctcttcgcctc 293
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 167 bits (84), Expect = 6e-38 Identities = 135/152 (88%) Strand = Plus / Minus Query: 203 gctcagtgcctgaagtggcggacgccggtgaagaggagggagacaccgtacttgttgcag 262 ||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||| Sbjct: 6217457 gctcagtgcctgaagtgcctgacgccggtgaagaggagggagacgccgtacttgttgcag 6217398 Query: 263 cactcgacggcatccttgtccctcatgctgccgccgggctgcgcgatcgtaccgatgccg 322 || |||||||| || ||||||||||||||||| |||| ||||||| ||||||||| Sbjct: 6217397 cagtcgacggcgtcgccgtccctcatgctgccgctcggctccgcgatcacgccgatgccg 6217338 Query: 323 ttctcgcatgcctcctccacggcgtccttcca 354 |||| ||| ||||||||||||||||| ||||| Sbjct: 6217337 ttctggcacgcctcctccacggcgtcgttcca 6217306 Score = 95.6 bits (48), Expect = 2e-16 Identities = 168/208 (80%) Strand = Plus / Minus Query: 483 ccttggcaatcacaatagcattgctcttcacgtgtttcgcacagagccaagcgaacttgg 542 ||||||| |||||||| || || ||||| ||||| || |||| ||||| || || |||| Sbjct: 6216579 ccttggctatcacaatggcgttactctttacgtgctttacacaaagccaggcaaatttgg 6216520 Query: 543 catccgagagctcgctgtccgtcggagctctctcagaacccgtcgtgaaggtgatgtctt 602 |||| |||||||| ||||| ||||||||||| || | || ||||||||||| |||| Sbjct: 6216519 catcagagagctcactgtcttgaggagctctctcggacactgttgtgaaggtgatatctt 6216460 Query: 603 ctggggctagatcgtctgactcttgagctagccaaccaccattgacctgcctgagcgaca 662 | |||| |||||| || ||||||||||| | ||| |||||| |||| |||||||| || | Sbjct: 6216459 caggggttagatcatcagactcttgagccaaccagccaccactgacttgcctgagtgata 6216400 Query: 663 gcatatttttcccgcttctcttcgcctc 690 |||| ||| || |||||||||||||| Sbjct: 6216399 gcatcccttttccacttctcttcgcctc 6216372 Score = 83.8 bits (42), Expect = 7e-13 Identities = 102/122 (83%) Strand = Plus / Minus Query: 359 aatgggaagaaggcgtcgctggccagagcagctcccttggcagcctcccctgctttcctg 418 ||||||||||| || || ||||||| ||||||||| ||||| |||| |||||||||||| Sbjct: 6216784 aatgggaagaatgcatcactggccaaagcagctcctttggcctcctctcctgctttcctg 6216725 Query: 419 aaggcaatcctcaagctgtccaccctgtttggctgcccgctccccatgcccagcatgcag 478 || ||||| |||| || |||| ||||||||||| || || |||||||| | ||||||| Sbjct: 6216724 aaagcaattctcagactctccagtctgtttggctggccacttcccatgcctaacatgcag 6216665 Query: 479 tt 480 || Sbjct: 6216664 tt 6216663
>dbj|AP003919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1734_E04 Length = 101439 Score = 167 bits (84), Expect = 6e-38 Identities = 135/152 (88%) Strand = Plus / Minus Query: 203 gctcagtgcctgaagtggcggacgccggtgaagaggagggagacaccgtacttgttgcag 262 ||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||| Sbjct: 3594 gctcagtgcctgaagtgcctgacgccggtgaagaggagggagacgccgtacttgttgcag 3535 Query: 263 cactcgacggcatccttgtccctcatgctgccgccgggctgcgcgatcgtaccgatgccg 322 || |||||||| || ||||||||||||||||| |||| ||||||| ||||||||| Sbjct: 3534 cagtcgacggcgtcgccgtccctcatgctgccgctcggctccgcgatcacgccgatgccg 3475 Query: 323 ttctcgcatgcctcctccacggcgtccttcca 354 |||| ||| ||||||||||||||||| ||||| Sbjct: 3474 ttctggcacgcctcctccacggcgtcgttcca 3443 Score = 95.6 bits (48), Expect = 2e-16 Identities = 168/208 (80%) Strand = Plus / Minus Query: 483 ccttggcaatcacaatagcattgctcttcacgtgtttcgcacagagccaagcgaacttgg 542 ||||||| |||||||| || || ||||| ||||| || |||| ||||| || || |||| Sbjct: 2716 ccttggctatcacaatggcgttactctttacgtgctttacacaaagccaggcaaatttgg 2657 Query: 543 catccgagagctcgctgtccgtcggagctctctcagaacccgtcgtgaaggtgatgtctt 602 |||| |||||||| ||||| ||||||||||| || | || ||||||||||| |||| Sbjct: 2656 catcagagagctcactgtcttgaggagctctctcggacactgttgtgaaggtgatatctt 2597 Query: 603 ctggggctagatcgtctgactcttgagctagccaaccaccattgacctgcctgagcgaca 662 | |||| |||||| || ||||||||||| | ||| |||||| |||| |||||||| || | Sbjct: 2596 caggggttagatcatcagactcttgagccaaccagccaccactgacttgcctgagtgata 2537 Query: 663 gcatatttttcccgcttctcttcgcctc 690 |||| ||| || |||||||||||||| Sbjct: 2536 gcatcccttttccacttctcttcgcctc 2509 Score = 83.8 bits (42), Expect = 7e-13 Identities = 102/122 (83%) Strand = Plus / Minus Query: 359 aatgggaagaaggcgtcgctggccagagcagctcccttggcagcctcccctgctttcctg 418 ||||||||||| || || ||||||| ||||||||| ||||| |||| |||||||||||| Sbjct: 2921 aatgggaagaatgcatcactggccaaagcagctcctttggcctcctctcctgctttcctg 2862 Query: 419 aaggcaatcctcaagctgtccaccctgtttggctgcccgctccccatgcccagcatgcag 478 || ||||| |||| || |||| ||||||||||| || || |||||||| | ||||||| Sbjct: 2861 aaagcaattctcagactctccagtctgtttggctggccacttcccatgcctaacatgcag 2802 Query: 479 tt 480 || Sbjct: 2801 tt 2800
>dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1119_C05 Length = 126112 Score = 167 bits (84), Expect = 6e-38 Identities = 135/152 (88%) Strand = Plus / Minus Query: 203 gctcagtgcctgaagtggcggacgccggtgaagaggagggagacaccgtacttgttgcag 262 ||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||| Sbjct: 80850 gctcagtgcctgaagtgcctgacgccggtgaagaggagggagacgccgtacttgttgcag 80791 Query: 263 cactcgacggcatccttgtccctcatgctgccgccgggctgcgcgatcgtaccgatgccg 322 || |||||||| || ||||||||||||||||| |||| ||||||| ||||||||| Sbjct: 80790 cagtcgacggcgtcgccgtccctcatgctgccgctcggctccgcgatcacgccgatgccg 80731 Query: 323 ttctcgcatgcctcctccacggcgtccttcca 354 |||| ||| ||||||||||||||||| ||||| Sbjct: 80730 ttctggcacgcctcctccacggcgtcgttcca 80699 Score = 95.6 bits (48), Expect = 2e-16 Identities = 168/208 (80%) Strand = Plus / Minus Query: 483 ccttggcaatcacaatagcattgctcttcacgtgtttcgcacagagccaagcgaacttgg 542 ||||||| |||||||| || || ||||| ||||| || |||| ||||| || || |||| Sbjct: 79972 ccttggctatcacaatggcgttactctttacgtgctttacacaaagccaggcaaatttgg 79913 Query: 543 catccgagagctcgctgtccgtcggagctctctcagaacccgtcgtgaaggtgatgtctt 602 |||| |||||||| ||||| ||||||||||| || | || ||||||||||| |||| Sbjct: 79912 catcagagagctcactgtcttgaggagctctctcggacactgttgtgaaggtgatatctt 79853 Query: 603 ctggggctagatcgtctgactcttgagctagccaaccaccattgacctgcctgagcgaca 662 | |||| |||||| || ||||||||||| | ||| |||||| |||| |||||||| || | Sbjct: 79852 caggggttagatcatcagactcttgagccaaccagccaccactgacttgcctgagtgata 79793 Query: 663 gcatatttttcccgcttctcttcgcctc 690 |||| ||| || |||||||||||||| Sbjct: 79792 gcatcccttttccacttctcttcgcctc 79765 Score = 83.8 bits (42), Expect = 7e-13 Identities = 102/122 (83%) Strand = Plus / Minus Query: 359 aatgggaagaaggcgtcgctggccagagcagctcccttggcagcctcccctgctttcctg 418 ||||||||||| || || ||||||| ||||||||| ||||| |||| |||||||||||| Sbjct: 80177 aatgggaagaatgcatcactggccaaagcagctcctttggcctcctctcctgctttcctg 80118 Query: 419 aaggcaatcctcaagctgtccaccctgtttggctgcccgctccccatgcccagcatgcag 478 || ||||| |||| || |||| ||||||||||| || || |||||||| | ||||||| Sbjct: 80117 aaagcaattctcagactctccagtctgtttggctggccacttcccatgcctaacatgcag 80058 Query: 479 tt 480 || Sbjct: 80057 tt 80056
>ref|NM_179909.1| Arabidopsis thaliana IMP cyclohydrolase/ phosphoribosylaminoimidazolecarboxamide formyltransferase AT2G35040 mRNA, complete cds Length = 1997 Score = 85.7 bits (43), Expect = 2e-13 Identities = 145/179 (81%) Strand = Plus / Minus Query: 332 gcctcctccacggcgtccttccaggcaaatgggaagaaggcgtcgctggccagagcagct 391 ||||| ||||| || || ||||| || ||||||||||| ||||| ||||||| |||||| Sbjct: 1683 gcctcttccaccgcatctttccaagcgaatgggaagaatgcgtcactggccaaggcagct 1624 Query: 392 cccttggcagcctcccctgctttcctgaaggcaatcctcaagctgtccaccctgtttggc 451 || || || ||||||| |||||| |||| || || |||| || || || | ||||||| Sbjct: 1623 cctttagcttcctccccagctttcttgaaagctattctcagactctctactcggtttggc 1564 Query: 452 tgcccgctccccatgcccagcatgcagttgtccttggcaatcacaatagcattgctctt 510 || ||||| ||||| |||||||| || |||| ||| || |||||||| ||||||||||| Sbjct: 1563 tgtccgcttcccatccccagcatacaattgttctttgctatcacaatggcattgctctt 1505
>gb|AY133727.1| Arabidopsis thaliana clone U20082 putative phosphoribosylaminoimidazolecarboxamide formyltransferase (At2g35040) mRNA, complete cds Length = 1822 Score = 85.7 bits (43), Expect = 2e-13 Identities = 145/179 (81%) Strand = Plus / Minus Query: 332 gcctcctccacggcgtccttccaggcaaatgggaagaaggcgtcgctggccagagcagct 391 ||||| ||||| || || ||||| || ||||||||||| ||||| ||||||| |||||| Sbjct: 1664 gcctcttccaccgcatctttccaagcgaatgggaagaatgcgtcactggccaaggcagct 1605 Query: 392 cccttggcagcctcccctgctttcctgaaggcaatcctcaagctgtccaccctgtttggc 451 || || || ||||||| |||||| |||| || || |||| || || || | ||||||| Sbjct: 1604 cctttagcttcctccccagctttcttgaaagctattctcagactctctactcggtttggc 1545 Query: 452 tgcccgctccccatgcccagcatgcagttgtccttggcaatcacaatagcattgctctt 510 || ||||| ||||| |||||||| || |||| ||| || |||||||| ||||||||||| Sbjct: 1544 tgtccgcttcccatccccagcatacaattgttctttgctatcacaatggcattgctctt 1486
>gb|AY091122.1| Arabidopsis thaliana putative phosphoribosylaminoimidazolecarboxamide formyltransferase (At2g35040) mRNA, complete cds Length = 2016 Score = 85.7 bits (43), Expect = 2e-13 Identities = 145/179 (81%) Strand = Plus / Minus Query: 332 gcctcctccacggcgtccttccaggcaaatgggaagaaggcgtcgctggccagagcagct 391 ||||| ||||| || || ||||| || ||||||||||| ||||| ||||||| |||||| Sbjct: 1683 gcctcttccaccgcatctttccaagcgaatgggaagaatgcgtcactggccaaggcagct 1624 Query: 392 cccttggcagcctcccctgctttcctgaaggcaatcctcaagctgtccaccctgtttggc 451 || || || ||||||| |||||| |||| || || |||| || || || | ||||||| Sbjct: 1623 cctttagcttcctccccagctttcttgaaagctattctcagactctctactcggtttggc 1564 Query: 452 tgcccgctccccatgcccagcatgcagttgtccttggcaatcacaatagcattgctctt 510 || ||||| ||||| |||||||| || |||| ||| || |||||||| ||||||||||| Sbjct: 1563 tgtccgcttcccatccccagcatacaattgttctttgctatcacaatggcattgctctt 1505
>emb|BX821285.1|CNS0A98A Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL32ZA02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1561 Score = 85.7 bits (43), Expect = 2e-13 Identities = 145/179 (81%) Strand = Plus / Minus Query: 332 gcctcctccacggcgtccttccaggcaaatgggaagaaggcgtcgctggccagagcagct 391 ||||| ||||| || || ||||| || ||||||||||| ||||| ||||||| |||||| Sbjct: 1287 gcctcttccaccgcatctttccaagcgaatgggaagaatgcgtcactggccaaggcagct 1228 Query: 392 cccttggcagcctcccctgctttcctgaaggcaatcctcaagctgtccaccctgtttggc 451 || || || ||||||| |||||| |||| || || |||| || || || | ||||||| Sbjct: 1227 cctttagcttcctccccagctttcttgaaagctattctcagactctctactcggtttggc 1168 Query: 452 tgcccgctccccatgcccagcatgcagttgtccttggcaatcacaatagcattgctctt 510 || ||||| ||||| |||||||| || |||| ||| || |||||||| ||||||||||| Sbjct: 1167 tgtccgcttcccatccccagcatacaattgttctttgctatcacaatggcattgctctt 1109
>gb|AC004238.3| Arabidopsis thaliana chromosome 2 clone F19I3 map ve016, complete sequence Length = 108484 Score = 56.0 bits (28), Expect = 2e-04 Identities = 94/116 (81%) Strand = Plus / Plus Query: 359 aatgggaagaaggcgtcgctggccagagcagctcccttggcagcctcccctgctttcctg 418 ||||||||||| ||||| ||||||| |||||||| || || ||||||| |||||| || Sbjct: 94284 aatgggaagaatgcgtcactggccaaggcagctcctttagcttcctccccagctttcttg 94343 Query: 419 aaggcaatcctcaagctgtccaccctgtttggctgcccgctccccatgcccagcat 474 || || || |||| || || || | ||||||||| ||||| ||||| |||||||| Sbjct: 94344 aaagctattctcagactctctactcggtttggctgtccgcttcccatccccagcat 94399
>gb|AY193836.1| Vigna unguiculata aminoimidazolecarboximide ribonucleotide transformylase/inosine monophosphate cyclohydrolase (pur9) mRNA, complete cds Length = 1965 Score = 54.0 bits (27), Expect = 6e-04 Identities = 141/179 (78%) Strand = Plus / Minus Query: 329 catgcctcctccacggcgtccttccaggcaaatgggaagaaggcgtcgctggccagagca 388 ||||| || ||||| || || ||||| ||||||||||||||||| || ||||||| || Sbjct: 1755 catgcttcttccacagcatctttccaagcaaatgggaagaaggcatcactggccaaggct 1696 Query: 389 gctcccttggcagcctcccctgctttcctgaaggcaatcctcaagctgtccaccctgttt 448 ||||| || || | || || |||||||| | || || ||||| || ||||| | |||| Sbjct: 1695 gctcctttaacatcatctccagctttcctcattgctattctcaaactctccacacggttt 1636 Query: 449 ggctgcccgctccccatgcccagcatgcagttgtccttggcaatcacaatagcattgct 507 || ||||| || ||||| || ||||| || |||| ||| || |||||||| |||||||| Sbjct: 1635 ggttgcccacttcccatacctagcatacaattgttcttagctatcacaatggcattgct 1577
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 46.1 bits (23), Expect = 0.15 Identities = 26/27 (96%) Strand = Plus / Plus Query: 355 ggcaaatgggaagaaggcgtcgctggc 381 |||||| |||||||||||||||||||| Sbjct: 3274479 ggcaaaggggaagaaggcgtcgctggc 3274505
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 202 ggctcagtgcctgaagtggcggacgccggtgaaga 236 ||||||||| | ||||||||| ||||||||||||| Sbjct: 881073 ggctcagtggcggaagtggcgcacgccggtgaaga 881039
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 44.1 bits (22), Expect = 0.61 Identities = 31/34 (91%) Strand = Plus / Minus Query: 203 gctcagtgcctgaagtggcggacgccggtgaaga 236 ||||||||| |||||||||| | ||||||||||| Sbjct: 509369 gctcagtgcttgaagtggcgcatgccggtgaaga 509336
>emb|AL360181.37| Human DNA sequence from clone RP11-122K13 on chromosome 10 Contains the 5' end of the TUBGCP2 gene for tubulin gamma complex associated protein 2, the gene for a novel protein, the gene for calcyon D1 dopamine receptor-interacting protein (CALCYON), an autointegration factor (BANF1) pseudogene, a novel gene, the gene for uterine-specific proline-rich acidic protein (UPA), gene FLJ34392, the ECHS1 gene for enoyl Coenzyme A hydratase, short chain, 1, mitachondrial, the gene for peroxisomal N1-acetyl-spermine/spermidine oxidase (PAO), a novel gene, the 5' end of a novel gene (LOC92170) and ten CpG islands, complete sequence Length = 116311 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 390 ctcccttggcagcctcccctg 410 ||||||||||||||||||||| Sbjct: 61288 ctcccttggcagcctcccctg 61308
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 248 ccgtacttgttgcagcactcg 268 ||||||||||||||||||||| Sbjct: 1125174 ccgtacttgttgcagcactcg 1125154
>ref|NM_210476.1| Eremothecium gossypii AER265Wp (AER265W), mRNA Length = 1032 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 248 ccgtacttgttgcagcactcg 268 ||||||||||||||||||||| Sbjct: 392 ccgtacttgttgcagcactcg 372
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 207 agtgcctgaagtggcggacgccggtgaa 234 |||||||||||||||| | ||||||||| Sbjct: 5512618 agtgcctgaagtggcgcatgccggtgaa 5512591
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 204 ctcagtgcctgaagtggcggacgccggt 231 |||||||||||||||| || |||||||| Sbjct: 1171328 ctcagtgcctgaagtgccgcacgccggt 1171301
>emb|AL365434.13| Human DNA sequence from clone RP11-236B18 on chromosome 10 Contains three novel genes and a DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 18 (Myc-regulated) (DDX18) pseudogene, complete sequence Length = 158357 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 tccttccaggcaaatgggaa 366 |||||||||||||||||||| Sbjct: 154321 tccttccaggcaaatgggaa 154302
>emb|AL121987.34|HSBA536C5 Human DNA sequence from clone RP11-536C5 on chromosome 1q23.1-24.1 Contains the 5' end of the KCNJ10 gene for potassium inwardly-rectifying channel subfamily J member 10, a novel gene, the KCNJ9 gene for potassium inwardly-rectifying channel subfamily J member 9, the IGSF8 gene for immunoglobulin superfamily member 8, the ATP1A2 gene for Na+/K+ transporting ATPase alpha 2 (+) polypeptide, the ATP1A4 gene for Na+/K+ transporting ATPase alpha 4 (+) polypeptide, the CASQ1 gene for calsequestrin 1 (fast-twitch, skeletal muscle), a novel gene, the PEA15 gene for phosphoprotein enriched in astrocytes 15 and four CpG islands, complete sequence Length = 170834 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 gctcccttggcagcctcccc 408 |||||||||||||||||||| Sbjct: 99895 gctcccttggcagcctcccc 99876
>emb|AL121901.20|HSBA49G10 Human DNA sequence from clone RP11-49G10 on chromosome 20 Contains the C20orf70 gene, the SOCS2P1 gene for suppressor of cytokine signalling 2 pseudogene 1, a novel gene, the C20orf71 gene, the PLUNC gene for palate, lung and nasal epithelium carcinoma associated, the 5' end of the C20orf114 gene encoding a protein similar to murine von ebner minor salivary gland protein, the RPL12P3 gene for ribosomal protein L12 pseudogene 3, the gene for breast cancer and salivary gland expression protein (BASE) and a CpG island, complete sequence Length = 161593 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 tggccagagcagctcccttg 397 |||||||||||||||||||| Sbjct: 94196 tggccagagcagctcccttg 94177
>emb|X55107.1|MLTRNATH M. luteus gene for tRNA-Thr Length = 200 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 gctggccagagcagctccct 395 |||||||||||||||||||| Sbjct: 82 gctggccagagcagctccct 101
>dbj|AB183847.1| Streptococcus suis purH, purD genes, partial cds, strain:89-590 Length = 982 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 gcaaatgggaagaaggcgtc 375 |||||||||||||||||||| Sbjct: 392 gcaaatgggaagaaggcgtc 373
>dbj|AB183846.1| Streptococcus suis purH, purD genes, partial cds, strain:89-5259 Length = 983 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 gcaaatgggaagaaggcgtc 375 |||||||||||||||||||| Sbjct: 392 gcaaatgggaagaaggcgtc 373
>dbj|AB183833.1| Streptococcus suis purH, purD genes, partial cds, strain:14636 Length = 982 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 gcaaatgggaagaaggcgtc 375 |||||||||||||||||||| Sbjct: 392 gcaaatgggaagaaggcgtc 373
>dbj|AB183832.1| Streptococcus suis purH, sepS6, purD genes, partial and complete cds, strain:2524 Length = 1841 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 gcaaatgggaagaaggcgtc 375 |||||||||||||||||||| Sbjct: 392 gcaaatgggaagaaggcgtc 373
>dbj|AB183831.1| Streptococcus suis purH, sepS5, purD genes, partial and complete cds, strain:11538 Length = 1940 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 gcaaatgggaagaaggcgtc 375 |||||||||||||||||||| Sbjct: 392 gcaaatgggaagaaggcgtc 373
>dbj|AB183830.1| Streptococcus suis purH, sepS4, purD genes, partial and complete cds, strain:6407 Length = 1940 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 gcaaatgggaagaaggcgtc 375 |||||||||||||||||||| Sbjct: 392 gcaaatgggaagaaggcgtc 373
>dbj|AB058944.2| Streptococcus suis purH, ssuMA, ssuMB, ssuRA, ssuRB, purD genes, partial and complete cds, strain: 89-2479 Length = 4486 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 gcaaatgggaagaaggcgtc 375 |||||||||||||||||||| Sbjct: 392 gcaaatgggaagaaggcgtc 373
>dbj|AB058943.2| Streptococcus suis purH, ssuMA, ssuMB, ssuRA, ssuRB, purD genes, partial and complete cds, strain: 8074 Length = 4486 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 gcaaatgggaagaaggcgtc 375 |||||||||||||||||||| Sbjct: 392 gcaaatgggaagaaggcgtc 373
>dbj|AB058942.2| Streptococcus suis purH, ssuMA, ssuMB, ssuRA, ssuRB, purD genes, partial and complete cds, strain: 4961 Length = 4486 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 gcaaatgggaagaaggcgtc 375 |||||||||||||||||||| Sbjct: 392 gcaaatgggaagaaggcgtc 373
>dbj|AB058941.2| Streptococcus suis purH, ssuMA, ssuMB, ssuRA, ssuRB, purD genes, partial and complete cds, strain: NIAH11318 Length = 4487 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 gcaaatgggaagaaggcgtc 375 |||||||||||||||||||| Sbjct: 393 gcaaatgggaagaaggcgtc 374
>emb|AJ784030.1| Mus musculus partial mRNA for immunoglobulin heavy chain variable region (IGHV gene), clone F22-4 Length = 345 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 tcatgctgccgccgggctgc 304 |||||||||||||||||||| Sbjct: 55 tcatgctgccgccgggctgc 36
>gb|AC160060.20| Mus musculus 10 BAC RP23-360L4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 229681 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 588 tgaaggtgatgtcttctggg 607 |||||||||||||||||||| Sbjct: 141089 tgaaggtgatgtcttctggg 141070
>dbj|AB045609.1| Streptococcus suis purF, purM, purN, purH, ssuMA, ssuMB, ssuRA, ssuRB, purD, purE genes, partial and complete cds Length = 9618 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 gcaaatgggaagaaggcgtc 375 |||||||||||||||||||| Sbjct: 3977 gcaaatgggaagaaggcgtc 3958 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,968,705 Number of Sequences: 3902068 Number of extensions: 4968705 Number of successful extensions: 88702 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88425 Number of HSP's gapped (non-prelim): 268 length of query: 691 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 668 effective length of database: 17,143,297,704 effective search space: 11451722866272 effective search space used: 11451722866272 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
