ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags9l13 |
|---|---|
| Clone Library Name | barley_pub |
>SKI2_YEAST (P35207) Antiviral helicase SKI2 (EC 3.6.1.-)| Length = 1287 Score = 129 bits (324), Expect = 7e-30 Identities = 68/160 (42%), Positives = 101/160 (63%), Gaps = 3/160 (1%) Frame = -2 Query: 647 ISTECLFENQLDELEPEEAVAIMSAFVFQQRNASE--PSLTPKLADAKKRLYDTAISLGQ 474 + TE + +N L EPEE VA++S FV++ + E P +TP+LA K+R+ + + Sbjct: 1128 VLTELILDNFLGSFEPEEIVALLSVFVYEGKTREEEPPIVTPRLAKGKQRIEEIYKKMLC 1187 Query: 473 LQKRHEVPVDPEEYA-RDNLKFGLVEVVYEWAKGTPFADICELTDVSEGLIVRTIVRLDE 297 + H++P+ +E D +F ++ VVYEWA+G F +I E++ +EG +VR I LDE Sbjct: 1188 VFNTHQIPLTQDEAEFLDRKRFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITWLDE 1247 Query: 296 TCREFRNAASIMGNSALYKKMEIASNAIKRDIVFAASLYV 177 CRE + A+ I+GNS L+ KM A IKRDIVFAASLY+ Sbjct: 1248 ICREVKTASIIIGNSTLHMKMSRAQELIKRDIVFAASLYL 1287
>MTR4_YEAST (P47047) ATP-dependent RNA helicase DOB1 (EC 3.6.1.-) (mRNA transport| regulator MTR4) Length = 1073 Score = 125 bits (313), Expect = 1e-28 Identities = 62/155 (40%), Positives = 97/155 (62%) Frame = -2 Query: 641 TECLFENQLDELEPEEAVAIMSAFVFQQRNASEPSLTPKLADAKKRLYDTAISLGQLQKR 462 TE +F +EL+PE+A A++S F FQ+R P L P+LA+ K + + A + ++ K Sbjct: 920 TELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKD 979 Query: 461 HEVPVDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVSEGLIVRTIVRLDETCREF 282 ++ V ++Y ++ + L+EVVYEW +G F IC++TDV EG ++R RL+E +E Sbjct: 980 SKIEVVEKDYV-ESFRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKEL 1038 Query: 281 RNAASIMGNSALYKKMEIASNAIKRDIVFAASLYV 177 + A+ +GNS+L +KME I RDIV A SLY+ Sbjct: 1039 VDVANTIGNSSLKEKMEAVLKLIHRDIVSAGSLYL 1073
>SKIV2_HUMAN (Q15477) Helicase SKI2W (EC 3.6.1.-) (Helicase-like protein) (HLP)| Length = 1246 Score = 119 bits (299), Expect = 6e-27 Identities = 67/154 (43%), Positives = 91/154 (59%) Frame = -2 Query: 641 TECLFENQLDELEPEEAVAIMSAFVFQQRNASEPSLTPKLADAKKRLYDTAISLGQLQKR 462 TE +F+N L L PEE A++S V Q + L L +R+ A +G++Q Sbjct: 1092 TELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQLPNTLKQGIERVRAVAKRIGEVQVA 1151 Query: 461 HEVPVDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVSEGLIVRTIVRLDETCREF 282 + EE+ + L FGLVEVVYEWA+G PF+++ L+ EGL+VR I RL E CR Sbjct: 1152 CGLNQTVEEFVGE-LNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQRLAEMCRSL 1210 Query: 281 RNAASIMGNSALYKKMEIASNAIKRDIVFAASLY 180 R AA ++G L KME A+ ++RDIVFAASLY Sbjct: 1211 RGAARLVGEPVLGAKMETAATLLRRDIVFAASLY 1244
>SK2L2_HUMAN (P42285) Superkiller viralicidic activity 2-like 2 (EC 3.6.1.-)| (ATP-dependent helicase SKIV2L2) Length = 1042 Score = 117 bits (292), Expect = 4e-26 Identities = 62/155 (40%), Positives = 94/155 (60%) Frame = -2 Query: 641 TECLFENQLDELEPEEAVAIMSAFVFQQRNASEPSLTPKLADAKKRLYDTAISLGQLQKR 462 TE +F ++L E+A A++S FVFQ+ ++ P LT +LA +++ + A + ++ Sbjct: 889 TEMMFNGLFNDLSAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAE 948 Query: 461 HEVPVDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVSEGLIVRTIVRLDETCREF 282 ++ +D E Y + K L++VVY WA G FA IC++TDV EG I+R + RL+E R+ Sbjct: 949 AKLEIDEETYL-SSFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQM 1007 Query: 281 RNAASIMGNSALYKKMEIASNAIKRDIVFAASLYV 177 AA +GN+ L K IKRDIVFAASLY+ Sbjct: 1008 CQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL 1042
>SK2L2_MOUSE (Q9CZU3) Superkiller viralicidic activity 2-like 2 (EC 3.6.1.-)| (ATP-dependent helicase SKIV2L2) Length = 1040 Score = 117 bits (292), Expect = 4e-26 Identities = 62/155 (40%), Positives = 94/155 (60%) Frame = -2 Query: 641 TECLFENQLDELEPEEAVAIMSAFVFQQRNASEPSLTPKLADAKKRLYDTAISLGQLQKR 462 TE +F ++L E+A A++S FVFQ+ ++ P LT +LA +++ + A + ++ Sbjct: 887 TEMMFNGLFNDLSSEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAE 946 Query: 461 HEVPVDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVSEGLIVRTIVRLDETCREF 282 ++ +D E Y + K L++VVY WA G FA IC++TDV EG I+R + RL+E R+ Sbjct: 947 AKLEIDEETYL-SSFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQM 1005 Query: 281 RNAASIMGNSALYKKMEIASNAIKRDIVFAASLYV 177 AA +GN+ L K IKRDIVFAASLY+ Sbjct: 1006 CQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL 1040
>YDVG_SCHPO (O14232) Putative helicase C6F12.16c (EC 3.6.1.-)| Length = 1117 Score = 114 bits (286), Expect = 2e-25 Identities = 62/156 (39%), Positives = 97/156 (62%), Gaps = 1/156 (0%) Frame = -2 Query: 641 TECLFENQLDELEPEEAVAIMSAFVFQQRNASEPS-LTPKLADAKKRLYDTAISLGQLQK 465 TE +F ++L PE+ A++S VFQ+++ E + +LA K L + A + ++ K Sbjct: 963 TELIFNGMFNDLTPEQCAALLSCLVFQEKSEVENQRMKEELAGPLKILQEMARRIAKVSK 1022 Query: 464 RHEVPVDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVSEGLIVRTIVRLDETCRE 285 + ++ EEY ++ K L+EVVY WA G FA IC++TDV EG ++R RL+E R+ Sbjct: 1023 ESKQELNEEEYV-NSFKPSLMEVVYAWAHGASFAQICKMTDVYEGSLIRMFRRLEELIRQ 1081 Query: 284 FRNAASIMGNSALYKKMEIASNAIKRDIVFAASLYV 177 +AA ++GN++L +KME I RDIVF+ASLY+ Sbjct: 1082 MVDAAKVIGNTSLQQKMEDTIACIHRDIVFSASLYL 1117
>YH2O_CAEEL (Q23223) Putative helicase W08D2.7 (EC 3.6.1.-)| Length = 1026 Score = 106 bits (264), Expect = 7e-23 Identities = 60/157 (38%), Positives = 93/157 (59%) Frame = -2 Query: 647 ISTECLFENQLDELEPEEAVAIMSAFVFQQRNASEPSLTPKLADAKKRLYDTAISLGQLQ 468 I TE L + + L+ + A++S FVFQ + A+ P L +L L++ A ++ ++ Sbjct: 872 ILTEMLLKGIFNTLDVAQTAALLSCFVFQDKCAA-PKLATELQTCLSELHEQARNVAKVS 930 Query: 467 KRHEVPVDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVSEGLIVRTIVRLDETCR 288 ++ V ++Y + GL++VVY+W G F++I + TDV EG I+RT+ RL+E R Sbjct: 931 NECKMEVMEDKYV-SSFNPGLMDVVYQWVNGATFSEIVKTTDVFEGSIIRTLRRLEEVLR 989 Query: 287 EFRNAASIMGNSALYKKMEIASNAIKRDIVFAASLYV 177 E NAA + N L +K E A +KRDIVFAASLY+ Sbjct: 990 EMINAAKALANKELEQKFEDARKNLKRDIVFAASLYL 1026
>YE02_SCHPO (O13799) Putative helicase C17H9.02 (EC 3.6.1.-)| Length = 1030 Score = 83.6 bits (205), Expect = 5e-16 Identities = 51/158 (32%), Positives = 87/158 (55%), Gaps = 4/158 (2%) Frame = -2 Query: 638 ECLFENQLDELEPEEAVAIMSAFVFQQRNASEPSLTPKLADAKKRLYDTAIS----LGQL 471 E +F+ +++ PEE A +S FV++ + SE S T L + K++Y T I + + Sbjct: 877 ELIFQGFFNQMPPEEIAAALSCFVYEDK--SEVS-TLNLKEPFKKMYLTIIEAAKRIATV 933 Query: 470 QKRHEVPVDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVSEGLIVRTIVRLDETC 291 ++ + +Y K ++E V W G F +IC ++ + EG IVRT RLDE Sbjct: 934 SLESKLQFNESDYLHQ-FKPDIMEPVSLWINGASFQEICIVSKLYEGSIVRTFRRLDELL 992 Query: 290 REFRNAASIMGNSALYKKMEIASNAIKRDIVFAASLYV 177 ++ +AA ++GN+ L +K + + RDI+F+ASLY+ Sbjct: 993 KQLEHAAIVLGNNELKEKSVLTEQKLHRDIIFSASLYL 1030
>HELY_MYCLE (Q9ZBD8) Probable helicase helY (EC 3.6.1.-)| Length = 920 Score = 40.0 bits (92), Expect = 0.006 Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 14/161 (8%) Frame = -2 Query: 638 ECLFENQLDELEPEEAVAIMSAFVFQQRNASEP-------SLTPKLADAKKRLYDTAISL 480 ECL L P E A++SA +++ R P + TP+L A + + +L Sbjct: 764 ECLRTGAWAGLRPAELAAVVSAVLYETRGDDGPGGPVDAEAPTPRLRQALQHTSRLSATL 823 Query: 479 GQLQKRHEVPVDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTD-------VSEGLIV 321 ++RH + + E G V V+Y WA+ A + D +S G V Sbjct: 824 RADEQRHRIALSREP------DDGFVGVIYCWARTGDLAAVLAAADASGNGAPLSAGDFV 877 Query: 320 RTIVRLDETCREFRNAASIMGNSALYKKMEIASNAIKRDIV 198 R ++ + + RNAA A K+ A N ++R +V Sbjct: 878 RWCRQVLDLLDQLRNAAPEPDLRATAKR---AINDVRRGVV 915
>HELY_MYCTU (Q10701) Probable helicase helY (EC 3.6.1.-)| Length = 906 Score = 34.7 bits (78), Expect = 0.25 Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 14/161 (8%) Frame = -2 Query: 638 ECLFENQLDELEPEEAVAIMSAFVFQQRNASEPSL-------TPKLADAKKRLYDTAISL 480 ECL + L+P E ++SA V++ R TP+L A + + +L Sbjct: 750 ECLRTGAWEGLKPAELAGVVSAVVYETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTL 809 Query: 479 GQLQKRHEVPVDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVS-------EGLIV 321 ++ H + P D G V V+Y W++ A DV+ G V Sbjct: 810 RADEQAHR--ITPSREPDD----GFVRVIYRWSRTGDLAAALAAADVNGSGSPLLAGDFV 863 Query: 320 RTIVRLDETCREFRNAASIMGNSALYKKMEIASNAIKRDIV 198 R ++ + + RNAA N L + A I+R +V Sbjct: 864 RWCRQVLDLLDQVRNAAP---NPELRATAKRAIGDIRRGVV 901
>KIF1C_RAT (O35787) Kinesin-like protein KIF1C (Kinesin-like protein KIF1D)| Length = 1097 Score = 32.3 bits (72), Expect = 1.2 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +3 Query: 267 GGGIPELPACFIQPHDCSYNQPFR 338 GGG+ PA F+ PHDC PF+ Sbjct: 955 GGGLRRPPARFVPPHDCKLRFPFK 978
>KIF1C_MOUSE (O35071) Kinesin-like protein KIF1C| Length = 1100 Score = 32.3 bits (72), Expect = 1.2 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +3 Query: 267 GGGIPELPACFIQPHDCSYNQPFR 338 GGG+ PA F+ PHDC PF+ Sbjct: 958 GGGLRRPPARFVPPHDCKLRFPFK 981
>BRL3_ARATH (Q9LJF3) Serine/threonine-protein kinase BRI1-like 3 precursor (EC| 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 3) Length = 1164 Score = 32.0 bits (71), Expect = 1.6 Identities = 21/79 (26%), Positives = 37/79 (46%) Frame = -2 Query: 515 AKKRLYDTAISLGQLQKRHEVPVDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVS 336 AK +Y + L +L + P+DPEE+ DN G + +Y +G D +TD S Sbjct: 1041 AKGDVYSYGVILLELLSGKK-PIDPEEFGEDNNLVGWAKQLYREKRGAEILDPELVTDKS 1099 Query: 335 EGLIVRTIVRLDETCREFR 279 + + +++ C + R Sbjct: 1100 GDVELLHYLKIASQCLDDR 1118
>RDRP_ACLSA (P54891) RNA-directed RNA polymerase (EC 2.7.7.48) (RNA replicase)| (216.5 kDa protein) (ORF1) Length = 1885 Score = 31.6 bits (70), Expect = 2.1 Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 15/137 (10%) Frame = +1 Query: 118 RTGISLLYKHGQAQAHHIPVTYKLAAKTMSRLMALDAI---SIFLYSAELPIMEAA---- 276 R +SL+Y G HI T L + + R D S+F+ +PI + Sbjct: 250 RYQVSLVYSLGSHHLFHIYPTEDLMKEEVRRFGPYDLFDVGSLFVKPVRVPIQDFPLSVF 309 Query: 277 -----FLNSLH---VSSSRTIVRTISPSDTSVSSHMSAKGVPFAHS*TTSTRPNLRLSRA 432 +L+SL V S+ +R +S +D S+ S + FA SR Sbjct: 310 KKIFIYLSSLKKPDVQSAVAKLRQLSDADISIESVFMVQ--EFA-------------SRV 354 Query: 433 YSSGSTGTSCLFWSCPK 483 +G SC FW C K Sbjct: 355 EKNGVGSWSCSFWECMK 371
>SYY_MYCGA (Q7NBH9) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA| ligase) (TyrRS) Length = 420 Score = 31.2 bits (69), Expect = 2.8 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 6/73 (8%) Frame = -2 Query: 638 ECLFENQLDELEPEEAVAIMSAF--VFQQRNAS----EPSLTPKLADAKKRLYDTAISLG 477 + LF+NQLD+L +E + + ++F V RN S + L K+AD+ KR+ I+ G Sbjct: 321 KALFDNQLDQLSDQEKLVVFASFDKVELDRNQSFMVIDFLLQAKVADS-KRILRELIAQG 379 Query: 476 QLQKRHEVPVDPE 438 +Q DP+ Sbjct: 380 SIQIDDLKITDPQ 392
>ARHG6_MOUSE (Q8K4I3) Rho guanine nucleotide exchange factor 6 (Rac/Cdc42| guanine nucleotide exchange factor 6) Length = 771 Score = 30.8 bits (68), Expect = 3.6 Identities = 15/37 (40%), Positives = 23/37 (62%) Frame = -2 Query: 512 KKRLYDTAISLGQLQKRHEVPVDPEEYARDNLKFGLV 402 ++RL ISLG L+ + DPEE+ + +LK G+V Sbjct: 4 EERLVTWLISLGVLESPKKTVCDPEEFLKSSLKNGVV 40
>KIF1C_HUMAN (O43896) Kinesin-like protein KIF1C| Length = 1103 Score = 30.0 bits (66), Expect = 6.2 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +3 Query: 267 GGGIPELPACFIQPHDCSYNQPFR 338 G G+ PA F+ PHDC+ PF+ Sbjct: 959 GRGVRRPPARFVPPHDCNVRFPFK 982
>ISAA_STAAW (P60157) Immunodominant staphylococcal antigen A precursor| Length = 233 Score = 30.0 bits (66), Expect = 6.2 Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Frame = +1 Query: 316 VRTISPSDTSVSSHMSAKGVPFAHS*TTSTRPN-LRLSRAYSSGSTGTS 459 V+++S + S +S++ A P H+ +TST + +RLS ++G+TG+S Sbjct: 112 VQSVSYNAQSSNSNVEAVSAPTYHNYSTSTTSSSVRLSNGNTAGATGSS 160
>ISAA_STAAU (P60158) Immunodominant staphylococcal antigen A precursor| (Secretory protein SAI-B) (SAI-2) Length = 233 Score = 30.0 bits (66), Expect = 6.2 Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Frame = +1 Query: 316 VRTISPSDTSVSSHMSAKGVPFAHS*TTSTRPN-LRLSRAYSSGSTGTS 459 V+++S + S +S++ A P H+ +TST + +RLS ++G+TG+S Sbjct: 112 VQSVSYNAQSSNSNVEAVSAPTYHNYSTSTTSSSVRLSNGNTAGATGSS 160
>ISAA_STAAS (Q6G6A5) Immunodominant staphylococcal antigen A precursor| Length = 233 Score = 30.0 bits (66), Expect = 6.2 Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Frame = +1 Query: 316 VRTISPSDTSVSSHMSAKGVPFAHS*TTSTRPN-LRLSRAYSSGSTGTS 459 V+++S + S +S++ A P H+ +TST + +RLS ++G+TG+S Sbjct: 112 VQSVSYNAQSSNSNVEAVSAPTYHNYSTSTTSSSVRLSNGNTAGATGSS 160
>ISAA_STAAR (Q6GDN1) Immunodominant staphylococcal antigen A precursor| Length = 233 Score = 30.0 bits (66), Expect = 6.2 Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Frame = +1 Query: 316 VRTISPSDTSVSSHMSAKGVPFAHS*TTSTRPN-LRLSRAYSSGSTGTS 459 V+++S + S +S++ A P H+ +TST + +RLS ++G+TG+S Sbjct: 112 VQSVSYNAQSSNSNVEAVSAPTYHNYSTSTTSSSVRLSNGNTAGATGSS 160
>ISAA_STAAN (P99160) Immunodominant staphylococcal antigen A precursor| Length = 233 Score = 30.0 bits (66), Expect = 6.2 Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Frame = +1 Query: 316 VRTISPSDTSVSSHMSAKGVPFAHS*TTSTRPN-LRLSRAYSSGSTGTS 459 V+++S + S +S++ A P H+ +TST + +RLS ++G+TG+S Sbjct: 112 VQSVSYNAQSSNSNVEAVSAPTYHNYSTSTTSSSVRLSNGNTAGATGSS 160
>ISAA_STAAM (P65645) Immunodominant staphylococcal antigen A precursor| Length = 233 Score = 30.0 bits (66), Expect = 6.2 Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Frame = +1 Query: 316 VRTISPSDTSVSSHMSAKGVPFAHS*TTSTRPN-LRLSRAYSSGSTGTS 459 V+++S + S +S++ A P H+ +TST + +RLS ++G+TG+S Sbjct: 112 VQSVSYNAQSSNSNVEAVSAPTYHNYSTSTTSSSVRLSNGNTAGATGSS 160
>ISAA_STAAC (Q5HCY1) Immunodominant staphylococcal antigen A precursor| Length = 233 Score = 30.0 bits (66), Expect = 6.2 Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Frame = +1 Query: 316 VRTISPSDTSVSSHMSAKGVPFAHS*TTSTRPN-LRLSRAYSSGSTGTS 459 V+++S + S +S++ A P H+ +TST + +RLS ++G+TG+S Sbjct: 112 VQSVSYNAQSSNSNVEAVSAPTYHNYSTSTTSSSVRLSNGNTAGATGSS 160
>HGBC_HAEIN (Q9KIV0) Hemoglobin-binding protein C precursor| Length = 993 Score = 30.0 bits (66), Expect = 6.2 Identities = 22/83 (26%), Positives = 35/83 (42%) Frame = -2 Query: 539 SLTPKLADAKKRLYDTAISLGQLQKRHEVPVDPEEYARDNLKFGLVEVVYEWAKGTPFAD 360 +L L + + R D + +L + +E P + D K + YE TPF D Sbjct: 283 TLAADLYEHRSRGQDLSYTLKYQRSGNETPEVESRHTNDKTKRRNISFSYENFSQTPFWD 342 Query: 359 ICELTDVSEGLIVRTIVRLDETC 291 +LT + ++T R DE C Sbjct: 343 TLKLTYSDQR--IKTRARTDEYC 363
>BRL1_ARATH (Q9ZWC8) Serine/threonine-protein kinase BRI1-like 1 precursor (EC| 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 1) Length = 1166 Score = 30.0 bits (66), Expect = 6.2 Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 2/97 (2%) Frame = -2 Query: 515 AKKRLYDTAISLGQLQKRHEVPVDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVS 336 AK +Y + L +L + P+DP E+ DN G + +Y +G D +TD S Sbjct: 1043 AKGDVYSYGVILLELLSGKK-PIDPGEFGEDNNLVGWAKQLYREKRGAEILDPELVTDKS 1101 Query: 335 EGLIVRTIVRLDETCREFR--NAASIMGNSALYKKME 231 + + +++ C + R +++ A++K+M+ Sbjct: 1102 GDVELFHYLKIASQCLDDRPFKRPTMIQLMAMFKEMK 1138
>PHYA_CUCPE (P06592) Phytochrome A| Length = 1124 Score = 30.0 bits (66), Expect = 6.2 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%) Frame = +3 Query: 183 QTCCEDDVALDGVGRDLHLL-VQRRVTHYGGGIPE 284 Q DV + +G+ +HL+ ++ R+T+ GGGIPE Sbjct: 1030 QLTISTDVTKNQLGKSVHLVHLEFRITYAGGGIPE 1064
>VPS41_CAEEL (Q19954) Vacuolar assembly protein VPS41 homolog| Length = 759 Score = 29.6 bits (65), Expect = 8.0 Identities = 22/63 (34%), Positives = 31/63 (49%) Frame = -2 Query: 455 VPVDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVSEGLIVRTIVRLDETCREFRN 276 VP PE+ R LK+ L + + AK AD+ TD+S + R I+ T + R Sbjct: 254 VPYGPEDGIRWRLKYKLYDEALDMAKHN--ADLLSKTDLSPKKVGRMIIEGYLTGKRARA 311 Query: 275 AAS 267 AAS Sbjct: 312 AAS 314 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,159,552 Number of Sequences: 219361 Number of extensions: 1785424 Number of successful extensions: 4667 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 4538 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4660 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
