>NOLC1_HUMAN (Q14978) Nucleolar phosphoprotein p130 (Nucleolar 130 kDa protein)|
           (140 kDa nucleolar phosphoprotein) (Nopp140) (Nucleolar
           and coiled-body phosphoprotein 1)
          Length = 699

 Score = 60.5 bits (145), Expect = 5e-09
 Identities = 40/110 (36%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
 Frame = -1

Query: 612 AKEDITATEDDVK--EPSTASKSNKRQKLSEPKSAFQRVKSEDIKFADERLQDNSYWAKG 439
           AKE  T     +K   P+T  K  K +K +   S F+RV+ E+I+  D R+ DNS+ AK 
Sbjct: 592 AKEAETPQAKKIKLQTPNTFPKRKKGEKRAS--SPFRRVREEEIE-VDSRVADNSFDAKR 648

Query: 438 GADSGYGAKAQEILGQVRGRDFRHEXXXXXXXXXXXGFIDLQTHSIKFNN 289
           GA   +G +A ++L   +G+ FRHE           G I +Q +SIKF++
Sbjct: 649 GAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSIKFDS 698

>NOLC1_RAT (P41777) Nucleolar phosphoprotein p130 (Nucleolar 130 kDa protein)|
           (140 kDa nucleolar phosphoprotein) (Nopp140) (Nucleolar
           and coiled-body phosphoprotein 1)
          Length = 704

 Score = 60.1 bits (144), Expect = 6e-09
 Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 12/129 (9%)
 Frame = -1

Query: 639 KEVEGSKPPA----KEDITATED--------DVKEPSTASKSNKRQKLSEPKSAFQRVKS 496
           K+  G+KP +    K + TA E          ++ P+T  K  K +K +   S F+RV+ 
Sbjct: 578 KKAAGTKPGSGKKRKHNETADEAATPQSKKVKLQTPNTFPKRKKGEKRAS--SPFRRVRE 635

Query: 495 EDIKFADERLQDNSYWAKGGADSGYGAKAQEILGQVRGRDFRHEXXXXXXXXXXXGFIDL 316
           E+I+  D R+ DNS+ AK GA   +G +A ++L   +G+ FRHE           G I +
Sbjct: 636 EEIE-VDSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISV 694

Query: 315 QTHSIKFNN 289
           Q +S+KF++
Sbjct: 695 QVNSVKFDS 703

>SRP40_YEAST (P32583) Suppressor protein SRP40|
          Length = 406

 Score = 47.0 bits (110), Expect = 6e-05
 Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
 Frame = -1

Query: 639 KEVEGSKPPAKEDITATEDDVKEPSTASKSNK------RQKLSE-PKSAFQRVKSEDIKF 481
           KE    +  A+E   ++ +     S++S +NK        ++ E  +  F RV    I F
Sbjct: 286 KEATADESKAEETPASSNESTPSASSSSSANKLNIPAGTDEIKEGQRKHFSRVDRSKINF 345

Query: 480 ADERLQDNSYWAKGGADSGYGAKAQEILGQVRGRDFRHEXXXXXXXXXXXGFIDLQTHSI 301
               L DN+Y    GA   +G KA E LG+VRG+DF              G I L++ S 
Sbjct: 346 EAWELTDNTY---KGAAGTWGEKANEKLGRVRGKDFTKNKNKMKRGSYRGGSITLESGSY 402

Query: 300 KFNN 289
           KF +
Sbjct: 403 KFQD 406

>AATF_RAT (Q9QYW0) Protein AATF (Apoptosis-antagonizing transcription factor)|
          Length = 523

 Score = 33.9 bits (76), Expect = 0.50
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
 Frame = -1

Query: 633 VEGSKPPAKEDITATEDD--VKEPSTASKSNKRQKLS-EPKSAFQRVKSEDIK-FADERL 466
           V+G+KP A+ +  ++EDD  V E     K+  ++KL  E   +F   +S D   + +  L
Sbjct: 271 VKGTKPNAESEEISSEDDELVGEKKKQRKAPPKRKLEMEDYPSFMAKRSADFTVYRNRTL 330

Query: 465 Q---DNSYWAKGGADSGYGAKAQEILGQV 388
           Q   D +  A G    G+GA  + IL Q+
Sbjct: 331 QKWHDKTKLASGKLGKGFGAFERSILTQI 359

>AP3D1_BOVIN (Q865S1) AP-3 complex subunit delta-1 (Adapter-related protein|
           complex 3 delta-1 subunit) (Delta-adaptin 3) (AP-3
           complex delta subunit) (Delta-adaptin)
          Length = 1207

 Score = 33.1 bits (74), Expect = 0.85
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -1

Query: 639 KEVEGSKPPAKEDITATEDDVKEPSTASKSNKRQKLSEPKSAFQRVKSEDIKF 481
           +  E SK P KED+   E   K+P    K +K ++  + K   +  K ED+ F
Sbjct: 822 RNAETSKSPEKEDVPLVEKKSKKPKKKEKKHKEKEREKKKKEVE--KGEDLDF 872

>BLVR_BOVIN (Q03368) Bovine leukemia virus cell receptor precursor (BLV-R)|
           (BLVPCP1)
          Length = 843

 Score = 33.1 bits (74), Expect = 0.85
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -1

Query: 639 KEVEGSKPPAKEDITATEDDVKEPSTASKSNKRQKLSEPKSAFQRVKSEDIKF 481
           +  E SK P KED+   E   K+P    K +K ++  + K   +  K ED+ F
Sbjct: 179 RNAETSKSPEKEDVPLVEKKSKKPKKKEKKHKEKEREKKKKEVE--KGEDLDF 229

>MYLK_MOUSE (Q6PDN3) Myosin light chain kinase, smooth muscle and non-muscle|
            isozymes (EC 2.7.11.18) (MLCK) [Contains: Telokin
            (Kinase-related protein) (KRP)]
          Length = 1941

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -1

Query: 648  GNWKEVEGSKPPAKEDITATEDDV--KEPSTASKSNKRQKLSEPKSAFQRVKSEDIKFAD 475
            GN K  E SKP  KE++   ++DV  K+    +  N+++  S+  +   + K +D+  A+
Sbjct: 1074 GNAKSAETSKPAGKEEVKEVKNDVNCKKGQVGATGNEKRPESQGSAPVFKEKLQDVHVAE 1133

>YUEB_BACSU (O32101) Bacteriophage SPP1 adsorption protein yueB (Bacteriophage|
           SPP1 receptor protein yueB)
          Length = 1076

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 25/89 (28%), Positives = 38/89 (42%)
 Frame = -1

Query: 630 EGSKPPAKEDITATEDDVKEPSTASKSNKRQKLSEPKSAFQRVKSEDIKFADERLQDNSY 451
           EG K P +E    T  D +EPST    N  +  ++  ++  +  +ED   ++E  QDN  
Sbjct: 428 EGLKEPEQEK--PTTPDAEEPSTDDSPNTEEPSNDIPTSDDQPTNEDTGSSEEGTQDNGS 485

Query: 450 WAKGGADSGYGAKAQEILGQVRGRDFRHE 364
                 +   G K QE    V  +D   E
Sbjct: 486 QNDVQTNIETGQKHQESSKNVPEQDTNTE 514

>ACM3_CHICK (P49578) Muscarinic acetylcholine receptor M3|
          Length = 639

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -1

Query: 633 VEGSKPPAKEDITATEDDVKEPSTASKSNKRQKLSEPKS 517
           +  +K P+ ED+  + D++++  T S+  K +KL  PKS
Sbjct: 426 LNSTKLPSSEDLNESADELQKSDTDSQEKKPKKLQPPKS 464

>HSP90_CANAL (P46598) Heat shock protein 90 homolog|
          Length = 707

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 17/70 (24%), Positives = 32/70 (45%)
 Frame = -1

Query: 639 KEVEGSKPPAKEDITATEDDVKEPSTASKSNKRQKLSEPKSAFQRVKSEDIKFADERLQD 460
           KEVE   P  +E+  A E+D K+P      ++  +  E K+   +   E++   +E  + 
Sbjct: 214 KEVEKEVPETEEEDKAAEEDDKKPKLEEVKDEEDEKKEKKT---KTVKEEVTETEELNKT 270

Query: 459 NSYWAKGGAD 430
              W +  +D
Sbjct: 271 KPLWTRNPSD 280

>PBPA_BACSU (P39793) Penicillin-binding protein 1A/1B (PBP1) [Includes:|
           Penicillin-insensitive transglycosylase (EC 2.4.2.-)
           (Peptidoglycan TGase); Penicillin-sensitive
           transpeptidase (EC 3.4.-.-) (DD-transpeptidase)]
          Length = 914

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -1

Query: 633 VEGSKPPA--KEDITATEDDVKEPSTASKSNKRQKLSEPKSAFQRVKSEDIKFADERLQD 460
           + G +P +  K ++TA  DD K  STAS S +  K  + +    + +++D K  DE+ QD
Sbjct: 759 ISGVQPGSVYKFEVTAVSDDGK--STASTSYEVPKAEDDEDKKDQQQTDDEKQDDEKTQD 816

Query: 459 NSYWAKGGADSG 424
           ++       D G
Sbjct: 817 DTQTDDSQKDDG 828

>RPSB_ANASP (Q03065) RNA polymerase sigma-B factor|
          Length = 332

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -2

Query: 464 KIIRIGLRVVLTLGTV--RRHRRFLDKLEEGILGTRRPRRSAEPT 336
           K+I+  LR+V+++     +R+  FLD ++EG LG  R     +PT
Sbjct: 100 KMIQANLRLVVSIAKKYQKRNLEFLDLIQEGALGLERGVEKFDPT 144

>VG12_BPP22 (P03006) Replicative DNA helicase (EC 3.6.1.-) (Replication protein|
           gp12)
          Length = 458

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -2

Query: 446 LRVVLTLGTVRRHRRFLDKLEEGILGTRRPRRSAEPTRVGSLI 318
           +R  ++ GT+    R +D+L + +   R+PR   +P R+G +I
Sbjct: 109 MREPISNGTLDASGRAMDELVKRLSSIRKPRNEVKPVRLGEII 151

>HBXAP_HUMAN (Q96T23) Hepatitis B virus X-associated protein (HBV pX-associated|
            protein 8) (Remodeling and spacing factor 1) (Rsf-1)
            (p325 subunit of RSF chromatin remodelling complex)
          Length = 1431

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
 Frame = -1

Query: 633  VEGSKPPAKEDITATEDDVKEPSTASKSN--KRQKLSEPKSAFQRVKSEDIKFADERLQD 460
            +E   PP + D +  +++ K+ S  SK+N  +R+     K    R    D +  DE ++D
Sbjct: 968  IENIIPPQEPDFSEDQEEKKKDSKKSKANLLERRSTRTRKCISYRFDEFD-EAIDEAIED 1026

Query: 459  NSYWAKGGADSGYGAKAQEILGQVRGRD 376
            +   A GG   G G     I G  RG+D
Sbjct: 1027 DIKEADGGG-VGRGKDISTITGH-RGKD 1052

>SWI6_SCHPO (P40381) Chromatin-associated protein swi6|
          Length = 328

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
 Frame = -1

Query: 642 WKEVEGSKPPAKEDITA--TEDDVKEPSTASKSNKRQKL-SEPKSAFQRVKSEDIKFADE 472
           W E  G   P+K   TA   + + KEPS  S+     K   +     + V  + IKFAD+
Sbjct: 132 WNEHGGRPEPSKRKRTARPKKPEAKEPSPKSRKTDEDKHDKDSNEKIEDVNEKTIKFADK 191

Query: 471 RLQD-NSYWAKGGADSGY 421
             ++ N      G  +G+
Sbjct: 192 SQEEFNENGPPSGQPNGH 209

>TY3H_DROME (P18459) Tyrosine 3-monooxygenase (EC 1.14.16.2) (Tyrosine|
           3-hydroxylase) (TH) (Protein Pale)
          Length = 579

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -1

Query: 639 KEVEGSKPPAKEDITATEDDVKEPSTASKSNKRQKLSEPKSAFQRVK 499
           +E EG++ P K D   TED++   + AS+S+  +   +  +   R+K
Sbjct: 120 QEPEGNQQPTKNDYGLTEDEILLANAASESSDAEAAMQSAALVVRLK 166

>YMFP_ECOLI (P75981) Hypothetical protein ymfP in lambdoid prophage e14 region|
          Length = 263

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 498 SEDIKFADERLQDNSYWA-KGGADSGYGAKAQEILGQVRGRDFRH 367
           +E+++    R+ +  YW  +GGAD  Y   A+E+ G  R   +RH
Sbjct: 87  TEELETWRARVIERYYWTPQGGADGDYVVWAKEVPGITRAWTYRH 131


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,409,776
Number of Sequences: 219361
Number of extensions: 1842488
Number of successful extensions: 5109
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5104
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7082949625
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)