Clone Name | rbags9k18 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 630 bits (318), Expect = e-177 Identities = 568/646 (87%), Gaps = 4/646 (0%) Strand = Plus / Minus Query: 39 atatacacatcatttgtacat-ggtgagcctggaggcaga-gcatccag-aacatcagtc 95 ||||||||||||| |||||| ||||||| ||||| || | |||||||| |||||||||| Sbjct: 24492666 atatacacatcatctgtacaaaggtgagcttggagccaaaagcatccaggaacatcagtc 24492607 Query: 96 tacaagccagtccaggttgtaacactcctctgctacctgcacacgaagatccgggatgac 155 |||||||||||||||||| |||||||| ||||||||||| || || || || |||||||| Sbjct: 24492606 tacaagccagtccaggttataacactcttctgctacctgaacccggaggtctgggatgac 24492547 Query: 156 ctgctcggcttccctccacagcatcgccgtttcctcatcacacacgacgtgcccgaggga 215 |||||| |||||||||||||||| |||||| ||||| || |||||||||||||||||||| Sbjct: 24492546 ctgctcagcttccctccacagcaacgccgtctcctcgtcgcacacgacgtgcccgaggga 24492487 Query: 216 cttcaacgacgaggaggacctcgggaggctcctcaaccgcgagcattcccgcatgtcgat 275 ||| | ||| ||||| ||||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 24492486 cttgagcgatgaggacgacctcgggaggctcctcagtcgcgagcattctcgcatgtcgat 24492427 Query: 276 cttctctaggtttgtcaagtgaccaagctcttccggaaggtctgtaaggttaatgcactg 335 |||||| ||| |||||| |||||| ||||| || || ||||| || ||||| | ||||| Sbjct: 24492426 cttctccaggcttgtcaggtgaccgagctcctcagggaggtccgtcaggttgacacactg 24492367 Query: 336 cgatatgtccaggtatttcaacctcttcaggctgcataccgaaggtggaagcttccacag 395 ||| ||||| |||||||||| |||||||||||||||||||||||| || ||| |||||| Sbjct: 24492366 cgaaatgtcgaggtatttcagcctcttcaggctgcataccgaaggcgggagccgccacag 24492307 Query: 396 tgccgggcaggcgtagacccgcaggatgctcaggcagtgcagcttgcccagctcatatgg 455 |||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| Sbjct: 24492306 agccgggcaggcgtatacccttaggatgctcaggcaatgcagcttgcccagctcatatgg 24492247 Query: 456 cagctctgtgaggtcatggcagtttgacaaggagatgctttccagagagctgatttcaca 515 |||||||||||||||||||||||||| | ||||||||| ||||| || ||||||||||| Sbjct: 24492246 aagctctgtgaggtcatggcagtttgagatggagatgctctccagggaactgatttcaca 24492187 Query: 516 taaactaggtggcagctccttcagatctacgcaatggtcaatggtgaggttggataggcg 575 || |||| ||| ||||||||||| |||| ||| |||||||||||||||||||||||||| Sbjct: 24492186 tatgctagatggtagctccttcaggtctatgcagtggtcaatggtgaggttggataggcg 24492127 Query: 576 cggaaacgtcatggagagatccatcgttgattcctcgtagactgttgttcagctcacaaa 635 ||| || ||||| |||||||||| | |||| ||||| ||||||||| |||||||||| | Sbjct: 24492126 cgggaatgtcatcgagagatccacctttga-tcctctcagactgttggtcagctcacaga 24492068 Query: 636 ggacgagggagatcttgcgtaggttcttcagtgggattgtgctttt 681 |||| ||||| |||||||| ||||||||||||||||||||| |||| Sbjct: 24492067 ggacaagggatatcttgcgcaggttcttcagtgggattgtggtttt 24492022
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 630 bits (318), Expect = e-177 Identities = 568/646 (87%), Gaps = 4/646 (0%) Strand = Plus / Minus Query: 39 atatacacatcatttgtacat-ggtgagcctggaggcaga-gcatccag-aacatcagtc 95 ||||||||||||| |||||| ||||||| ||||| || | |||||||| |||||||||| Sbjct: 24420872 atatacacatcatctgtacaaaggtgagcttggagccaaaagcatccaggaacatcagtc 24420813 Query: 96 tacaagccagtccaggttgtaacactcctctgctacctgcacacgaagatccgggatgac 155 |||||||||||||||||| |||||||| ||||||||||| || || || || |||||||| Sbjct: 24420812 tacaagccagtccaggttataacactcttctgctacctgaacccggaggtctgggatgac 24420753 Query: 156 ctgctcggcttccctccacagcatcgccgtttcctcatcacacacgacgtgcccgaggga 215 |||||| |||||||||||||||| |||||| ||||| || |||||||||||||||||||| Sbjct: 24420752 ctgctcagcttccctccacagcaacgccgtctcctcgtcgcacacgacgtgcccgaggga 24420693 Query: 216 cttcaacgacgaggaggacctcgggaggctcctcaaccgcgagcattcccgcatgtcgat 275 ||| | ||| ||||| ||||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 24420692 cttgagcgatgaggacgacctcgggaggctcctcagtcgcgagcattctcgcatgtcgat 24420633 Query: 276 cttctctaggtttgtcaagtgaccaagctcttccggaaggtctgtaaggttaatgcactg 335 |||||| ||| |||||| |||||| ||||| || || ||||| || ||||| | ||||| Sbjct: 24420632 cttctccaggcttgtcaggtgaccgagctcctcagggaggtccgtcaggttgacacactg 24420573 Query: 336 cgatatgtccaggtatttcaacctcttcaggctgcataccgaaggtggaagcttccacag 395 ||| ||||| |||||||||| |||||||||||||||||||||||| || ||| |||||| Sbjct: 24420572 cgaaatgtcgaggtatttcagcctcttcaggctgcataccgaaggcgggagccgccacag 24420513 Query: 396 tgccgggcaggcgtagacccgcaggatgctcaggcagtgcagcttgcccagctcatatgg 455 |||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| Sbjct: 24420512 agccgggcaggcgtatacccttaggatgctcaggcaatgcagcttgcccagctcatatgg 24420453 Query: 456 cagctctgtgaggtcatggcagtttgacaaggagatgctttccagagagctgatttcaca 515 |||||||||||||||||||||||||| | ||||||||| ||||| || ||||||||||| Sbjct: 24420452 aagctctgtgaggtcatggcagtttgagatggagatgctctccagggaactgatttcaca 24420393 Query: 516 taaactaggtggcagctccttcagatctacgcaatggtcaatggtgaggttggataggcg 575 || |||| ||| ||||||||||| |||| ||| |||||||||||||||||||||||||| Sbjct: 24420392 tatgctagatggtagctccttcaggtctatgcagtggtcaatggtgaggttggataggcg 24420333 Query: 576 cggaaacgtcatggagagatccatcgttgattcctcgtagactgttgttcagctcacaaa 635 ||| || ||||| |||||||||| | |||| ||||| ||||||||| |||||||||| | Sbjct: 24420332 cgggaatgtcatcgagagatccacctttga-tcctctcagactgttggtcagctcacaga 24420274 Query: 636 ggacgagggagatcttgcgtaggttcttcagtgggattgtgctttt 681 |||| ||||| |||||||| ||||||||||||||||||||| |||| Sbjct: 24420273 ggacaagggatatcttgcgcaggttcttcagtgggattgtggtttt 24420228
>emb|AL844880.3|CNS08CB3 Oryza sativa chromosome 12, . BAC OSJNBb0049H14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 120071 Score = 630 bits (318), Expect = e-177 Identities = 568/646 (87%), Gaps = 4/646 (0%) Strand = Plus / Minus Query: 39 atatacacatcatttgtacat-ggtgagcctggaggcaga-gcatccag-aacatcagtc 95 ||||||||||||| |||||| ||||||| ||||| || | |||||||| |||||||||| Sbjct: 63697 atatacacatcatctgtacaaaggtgagcttggagccaaaagcatccaggaacatcagtc 63638 Query: 96 tacaagccagtccaggttgtaacactcctctgctacctgcacacgaagatccgggatgac 155 |||||||||||||||||| |||||||| ||||||||||| || || || || |||||||| Sbjct: 63637 tacaagccagtccaggttataacactcttctgctacctgaacccggaggtctgggatgac 63578 Query: 156 ctgctcggcttccctccacagcatcgccgtttcctcatcacacacgacgtgcccgaggga 215 |||||| |||||||||||||||| |||||| ||||| || |||||||||||||||||||| Sbjct: 63577 ctgctcagcttccctccacagcaacgccgtctcctcgtcgcacacgacgtgcccgaggga 63518 Query: 216 cttcaacgacgaggaggacctcgggaggctcctcaaccgcgagcattcccgcatgtcgat 275 ||| | ||| ||||| ||||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 63517 cttgagcgatgaggacgacctcgggaggctcctcagtcgcgagcattctcgcatgtcgat 63458 Query: 276 cttctctaggtttgtcaagtgaccaagctcttccggaaggtctgtaaggttaatgcactg 335 |||||| ||| |||||| |||||| ||||| || || ||||| || ||||| | ||||| Sbjct: 63457 cttctccaggcttgtcaggtgaccgagctcctcagggaggtccgtcaggttgacacactg 63398 Query: 336 cgatatgtccaggtatttcaacctcttcaggctgcataccgaaggtggaagcttccacag 395 ||| ||||| |||||||||| |||||||||||||||||||||||| || ||| |||||| Sbjct: 63397 cgaaatgtcgaggtatttcagcctcttcaggctgcataccgaaggcgggagccgccacag 63338 Query: 396 tgccgggcaggcgtagacccgcaggatgctcaggcagtgcagcttgcccagctcatatgg 455 |||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| Sbjct: 63337 agccgggcaggcgtatacccttaggatgctcaggcaatgcagcttgcccagctcatatgg 63278 Query: 456 cagctctgtgaggtcatggcagtttgacaaggagatgctttccagagagctgatttcaca 515 |||||||||||||||||||||||||| | ||||||||| ||||| || ||||||||||| Sbjct: 63277 aagctctgtgaggtcatggcagtttgagatggagatgctctccagggaactgatttcaca 63218 Query: 516 taaactaggtggcagctccttcagatctacgcaatggtcaatggtgaggttggataggcg 575 || |||| ||| ||||||||||| |||| ||| |||||||||||||||||||||||||| Sbjct: 63217 tatgctagatggtagctccttcaggtctatgcagtggtcaatggtgaggttggataggcg 63158 Query: 576 cggaaacgtcatggagagatccatcgttgattcctcgtagactgttgttcagctcacaaa 635 ||| || ||||| |||||||||| | |||| ||||| ||||||||| |||||||||| | Sbjct: 63157 cgggaatgtcatcgagagatccacctttga-tcctctcagactgttggtcagctcacaga 63099 Query: 636 ggacgagggagatcttgcgtaggttcttcagtgggattgtgctttt 681 |||| ||||| |||||||| ||||||||||||||||||||| |||| Sbjct: 63098 ggacaagggatatcttgcgcaggttcttcagtgggattgtggtttt 63053
>dbj|AK119516.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-C04, full insert sequence Length = 1937 Score = 622 bits (314), Expect = e-175 Identities = 567/646 (87%), Gaps = 4/646 (0%) Strand = Plus / Minus Query: 39 atatacacatcatttgtacat-ggtgagcctggaggcaga-gcatccag-aacatcagtc 95 ||||||||||||| |||||| ||||||| ||||| || | |||||||| |||||||||| Sbjct: 1895 atatacacatcatctgtacaaaggtgagcttggagccaaaagcatccaggaacatcagtc 1836 Query: 96 tacaagccagtccaggttgtaacactcctctgctacctgcacacgaagatccgggatgac 155 |||||||||||||||||| |||||||| ||||||||||| || || || || |||||||| Sbjct: 1835 tacaagccagtccaggttataacactcttctgctacctgaacccggaggtctgggatgac 1776 Query: 156 ctgctcggcttccctccacagcatcgccgtttcctcatcacacacgacgtgcccgaggga 215 |||||| |||||||||||||||| |||||| ||||| || |||||||||||||||||||| Sbjct: 1775 ctgctcagcttccctccacagcaacgccgtctcctcgtcgcacacgacgtgcccgaggga 1716 Query: 216 cttcaacgacgaggaggacctcgggaggctcctcaaccgcgagcattcccgcatgtcgat 275 ||| | ||| ||||| ||||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 1715 cttgagcgatgaggacgacctcgggaggctcctcagtcgcgagcattctcgcatgtcgat 1656 Query: 276 cttctctaggtttgtcaagtgaccaagctcttccggaaggtctgtaaggttaatgcactg 335 |||||| ||| |||||| |||||| ||||| || || ||||| || ||||| | ||||| Sbjct: 1655 cttctccaggcttgtcaggtgaccgagctcctcagggaggtccgtcaggttgacacactg 1596 Query: 336 cgatatgtccaggtatttcaacctcttcaggctgcataccgaaggtggaagcttccacag 395 ||| ||||| |||||||||| |||||||||||||||||||||||| || ||| |||||| Sbjct: 1595 cgaaatgtcgaggtatttcagcctcttcaggctgcataccgaaggcgggagccgccacag 1536 Query: 396 tgccgggcaggcgtagacccgcaggatgctcaggcagtgcagcttgcccagctcatatgg 455 |||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| Sbjct: 1535 agccgggcaggcgtatacccttaggatgctcaggcaatgcagcttgcccagctcatatgg 1476 Query: 456 cagctctgtgaggtcatggcagtttgacaaggagatgctttccagagagctgatttcaca 515 ||||||||||||||||||||||||| | ||||||||| ||||| || ||||||||||| Sbjct: 1475 aagctctgtgaggtcatggcagtttgggatggagatgctctccagggaactgatttcaca 1416 Query: 516 taaactaggtggcagctccttcagatctacgcaatggtcaatggtgaggttggataggcg 575 || |||| ||| ||||||||||| |||| ||| |||||||||||||||||||||||||| Sbjct: 1415 tatgctagatggtagctccttcaggtctatgcagtggtcaatggtgaggttggataggcg 1356 Query: 576 cggaaacgtcatggagagatccatcgttgattcctcgtagactgttgttcagctcacaaa 635 ||| || ||||| |||||||||| | |||| ||||| ||||||||| |||||||||| | Sbjct: 1355 cgggaatgtcatcgagagatccacctttga-tcctctcagactgttggtcagctcacaga 1297 Query: 636 ggacgagggagatcttgcgtaggttcttcagtgggattgtgctttt 681 |||| ||||| |||||||| ||||||||||||||||||||| |||| Sbjct: 1296 ggacaagggatatcttgcgcaggttcttcagtgggattgtggtttt 1251
>gb|AY661657.1| Sorghum bicolor clone BAC 60H10, complete sequence Length = 125927 Score = 444 bits (224), Expect = e-121 Identities = 513/608 (84%), Gaps = 1/608 (0%) Strand = Plus / Minus Query: 87 acatcagtctacaagccagtccaggttgtaacactcctctgctacctgcacacgaagatc 146 ||||||||| | ||||||||||||||||| ||||| || || ||||| || || || || Sbjct: 92402 acatcagtccgctagccagtccaggttgtagcactcttcggccacctgaacccggaggtc 92343 Query: 147 cgggatgacctgctcggcttccctccacagcatcgccgtttcctcatcacacacgacgtg 206 ||||||||||||||||| ||||||||||||| |||||| ||||| || ||||||||||| Sbjct: 92342 agggatgacctgctcggcctccctccacagcagcgccgtctcctcgtcgcacacgacgtg 92283 Query: 207 cccgagggacttcaacgacgaggaggacctcgggaggctcctcaaccgcgagcattcccg 266 ||||||||||| | |||||| || |||| |||||||||||||| || ||||| || || Sbjct: 92282 gccgagggacttgagcgacgacgacgaccgcgggaggctcctcaggcgggagcactcgcg 92223 Query: 267 catgtcgatcttctctaggtttgtcaagtgaccaagctcttccggaaggtctgtaaggtt 326 ||||||||||||||| ||| | |||| ||| || ||||| ||||| ||||| || ||||| Sbjct: 92222 catgtcgatcttctccaggctcgtcaggtggccgagctcctccgggaggtcggtcaggtt 92163 Query: 327 aatgcactgcgatatgtccaggtatttcaacctcttcaggctgcataccgaaggtggaag 386 ||||||||||| ||||| ||||| || | ||||||||||||||| ||||| | ||| || Sbjct: 92162 gatgcactgcgagatgtcgaggtacttgagcctcttcaggctgcacaccgacgctgggag 92103 Query: 387 cttccacagtgccgggcaggcgtagacccgcaggatgctcaggcagtgcagcttgcccag 446 | ||| || ||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 92102 ccgccagagcgccgggcaggcgtagacacggaggatgctcaggcagtgcagcttgcccag 92043 Query: 447 ctcatatggcagctctgtgaggtcatggcagtttgacaaggagatgctttccagagagct 506 ||| || || ||||| |||||||| |||||||| || | ||||||| | ||||| ||||| Sbjct: 92042 ctcgtagggaagctcggtgaggtcgtggcagttggagatggagatggtctccagcgagct 91983 Query: 507 gatttcacataaactaggtggcagctccttcagatctacgcaatggtcaatggtgaggtt 566 ||| || || | || | ||||||||||||||| |||| ||| ||||| || |||||||| Sbjct: 91982 gatctcgcagatgcttgatggcagctccttcaggtctatgcagtggtcgattgtgaggtt 91923 Query: 567 ggataggcgcggaaacgtcatggagagatccatcgttgattcctcgtagactgttgttca 626 ||| ||||||||||||||||| || || ||||||||||| ||||| ||| ||| |||||| Sbjct: 91922 ggagaggcgcggaaacgtcatcgacaggtccatcgttga-tcctcttaggctgctgttca 91864 Query: 627 gctcacaaaggacgagggagatcttgcgtaggttcttcagtgggattgtgcttttcggca 686 |||| || |||||||||||||||||| | ||||||||||| ||||| ||| | || |||| Sbjct: 91863 gctcgcagaggacgagggagatcttgtgcaggttcttcagcgggatggtggtctttggca 91804 Query: 687 gtggcggg 694 | |||||| Sbjct: 91803 gcggcggg 91796
>gb|AY661658.1| Sorghum bicolor clone BAC 796all, complete sequence Length = 103167 Score = 436 bits (220), Expect = e-119 Identities = 512/608 (84%), Gaps = 1/608 (0%) Strand = Plus / Minus Query: 87 acatcagtctacaagccagtccaggttgtaacactcctctgctacctgcacacgaagatc 146 ||||||||| | ||||||||||||||||| ||||| || || ||||| || || || || Sbjct: 25757 acatcagtccgctagccagtccaggttgtagcactcttcggccacctgaacccggaggtc 25698 Query: 147 cgggatgacctgctcggcttccctccacagcatcgccgtttcctcatcacacacgacgtg 206 ||||||||||||||||| ||||||||||||| |||||| ||||| || || |||||||| Sbjct: 25697 agggatgacctgctcggcctccctccacagcagcgccgtctcctcgtcgcatacgacgtg 25638 Query: 207 cccgagggacttcaacgacgaggaggacctcgggaggctcctcaaccgcgagcattcccg 266 ||||||||||| | |||||| || |||| |||||||||||||| || ||||| || || Sbjct: 25637 gccgagggacttgagcgacgacgacgaccgcgggaggctcctcaggcgggagcactcgcg 25578 Query: 267 catgtcgatcttctctaggtttgtcaagtgaccaagctcttccggaaggtctgtaaggtt 326 ||||||||||||||| ||| | |||| ||| || ||||| ||||| ||||| || ||||| Sbjct: 25577 catgtcgatcttctccaggctcgtcaggtggccgagctcctccgggaggtcggtcaggtt 25518 Query: 327 aatgcactgcgatatgtccaggtatttcaacctcttcaggctgcataccgaaggtggaag 386 ||||||||||| ||||| ||||| || | ||||||||||||||| ||||| | ||| || Sbjct: 25517 gatgcactgcgagatgtcgaggtacttgagcctcttcaggctgcacaccgacgctgggag 25458 Query: 387 cttccacagtgccgggcaggcgtagacccgcaggatgctcaggcagtgcagcttgcccag 446 | ||| || ||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 25457 ccgccagagcgccgggcaggcgtagacacggaggatgctcaggcagtgcagcttgcccag 25398 Query: 447 ctcatatggcagctctgtgaggtcatggcagtttgacaaggagatgctttccagagagct 506 ||| || || ||||| |||||||| |||||||| || | ||||||| | ||||| ||||| Sbjct: 25397 ctcgtagggaagctcggtgaggtcgtggcagttggagatggagatggtctccagcgagct 25338 Query: 507 gatttcacataaactaggtggcagctccttcagatctacgcaatggtcaatggtgaggtt 566 ||| || || | || | ||||||||||||||| |||| ||| ||||| || |||||||| Sbjct: 25337 gatctcgcagatgcttgatggcagctccttcaggtctatgcagtggtcgattgtgaggtt 25278 Query: 567 ggataggcgcggaaacgtcatggagagatccatcgttgattcctcgtagactgttgttca 626 ||| ||||||||||||||||| || || ||||||||||| ||||| ||| ||| |||||| Sbjct: 25277 ggagaggcgcggaaacgtcatcgacaggtccatcgttga-tcctcttaggctgctgttca 25219 Query: 627 gctcacaaaggacgagggagatcttgcgtaggttcttcagtgggattgtgcttttcggca 686 |||| || |||||||||||||||||| | ||||||||||| ||||| ||| | || |||| Sbjct: 25218 gctcgcagaggacgagggagatcttgtgcaggttcttcagcgggatggtggtctttggca 25159 Query: 687 gtggcggg 694 | |||||| Sbjct: 25158 gcggcggg 25151
>gb|AC145901.2| Pan troglodytes BAC clone RP43-9F20 from 7, complete sequence Length = 176187 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 417 caggatgctcaggcagtgcag 437 ||||||||||||||||||||| Sbjct: 173096 caggatgctcaggcagtgcag 173116
>gb|AC004109.1| Homo sapiens PAC clone RP4-608H12 from 7, complete sequence Length = 69201 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 417 caggatgctcaggcagtgcag 437 ||||||||||||||||||||| Sbjct: 45650 caggatgctcaggcagtgcag 45670
>gb|AC147291.3| Pan troglodytes BAC clone RP43-74J18 from chromosome 7, complete sequence Length = 219031 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 417 caggatgctcaggcagtgcag 437 ||||||||||||||||||||| Sbjct: 42292 caggatgctcaggcagtgcag 42312
>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome Length = 1751377 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 498 cagagagctgatttcacataa 518 ||||||||||||||||||||| Sbjct: 1620218 cagagagctgatttcacataa 1620198
>gb|AC148409.2| X. tropicalis BAC clone ISB1-267G18 containing gene for frzb2, complete sequence Length = 69081 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 320 taaggttaatgcactgcgatatgt 343 ||||||||||| |||||||||||| Sbjct: 37919 taaggttaatgaactgcgatatgt 37942
>emb|AL672213.5| Zebrafish DNA sequence from clone BUSM1-73O4 Contains part of a novel gene, a novel gene and part of a novel gene similar to STAT (signal transducer and activator of transcription) and a novel transposase pseudogene, complete sequence Length = 65728 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 tcatggcagtttgacaagga 488 |||||||||||||||||||| Sbjct: 54792 tcatggcagtttgacaagga 54773
>emb|AL596027.11| Zebrafish DNA sequence from clone XX-51F19 in linkage group 19 Contains part of novel genes similar to human STAT1 and STAT4 (signal transduction and activator of transcription) and a CpG island, complete sequence Length = 72221 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 tcatggcagtttgacaagga 488 |||||||||||||||||||| Sbjct: 34391 tcatggcagtttgacaagga 34410
>emb|AL596024.5| Zebrafish DNA sequence from clone BUSM1-199M19 in linkage group 7 Contains two novel genes similar to STAT (signal transducer and activator of transcription, a novel gene and a CpG island, complete sequence Length = 51817 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 tcatggcagtttgacaagga 488 |||||||||||||||||||| Sbjct: 14130 tcatggcagtttgacaagga 14149
>gb|BC042991.1| Homo sapiens cDNA clone IMAGE:5296604 Length = 2641 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 cagctctgtgaggtcatggc 475 |||||||||||||||||||| Sbjct: 1753 cagctctgtgaggtcatggc 1734
>gb|AC127520.5| Homo sapiens chromosome 15, clone RP11-825M14, complete sequence Length = 155382 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 tccagagagctgatttcaca 515 |||||||||||||||||||| Sbjct: 116938 tccagagagctgatttcaca 116957
>emb|BX649377.8| Zebrafish DNA sequence from clone CH211-196J1 in linkage group 19, complete sequence Length = 217898 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 tcatggcagtttgacaagga 488 |||||||||||||||||||| Sbjct: 19154 tcatggcagtttgacaagga 19135
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 tccgggatgacctgctcggc 164 |||||||||||||||||||| Sbjct: 1607103 tccgggatgacctgctcggc 1607122
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 gatgacctgctcggcttccc 169 |||||||||||||||||||| Sbjct: 480069 gatgacctgctcggcttccc 480088
>gb|AF226719.1|AF226719 Trichomonas vaginalis chaperonin subunit zeta CCTzeta (Cctz) gene, complete cds Length = 1754 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 621 tgttcagctcacaaaggacg 640 |||||||||||||||||||| Sbjct: 225 tgttcagctcacaaaggacg 244
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 ggatgacctgctcggcttcc 168 |||||||||||||||||||| Sbjct: 1604393 ggatgacctgctcggcttcc 1604374
>emb|AL512791.3|CNS07EFF Human chromosome 14 DNA sequence BAC R-471B22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 178834 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 cagctctgtgaggtcatggc 475 |||||||||||||||||||| Sbjct: 156914 cagctctgtgaggtcatggc 156933
>emb|AL672166.8| Zebrafish DNA sequence from clone XX-134G18, complete sequence Length = 74692 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 tcatggcagtttgacaagga 488 |||||||||||||||||||| Sbjct: 11044 tcatggcagtttgacaagga 11063
>emb|AL672197.12| Zebrafish DNA sequence from clone XX-102M24 in linkage group 19, complete sequence Length = 9156 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 tcatggcagtttgacaagga 488 |||||||||||||||||||| Sbjct: 4004 tcatggcagtttgacaagga 3985
>gb|AC006536.2|AC006536 Homo sapiens chromosome 14 clone BAC257P13 map 14q31, complete sequence Length = 185402 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 cagctctgtgaggtcatggc 475 |||||||||||||||||||| Sbjct: 116265 cagctctgtgaggtcatggc 116284
>emb|AL096869.8|CNS00YVH Human chromosome 14 DNA sequence BAC R-1078H9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 228097 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 cagctctgtgaggtcatggc 475 |||||||||||||||||||| Sbjct: 159385 cagctctgtgaggtcatggc 159366
>gb|AC002468.1|AC002468 Human Chromosome 15q26.1 PAC clone pDJ417d7, complete sequence Length = 115888 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 tccagagagctgatttcaca 515 |||||||||||||||||||| Sbjct: 104620 tccagagagctgatttcaca 104639 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,530,260 Number of Sequences: 3902068 Number of extensions: 5530260 Number of successful extensions: 96565 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96331 Number of HSP's gapped (non-prelim): 222 length of query: 713 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 690 effective length of database: 17,143,297,704 effective search space: 11828875415760 effective search space used: 11828875415760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)