ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags9k15 |
|---|---|
| Clone Library Name | barley_pub |
>BP73_ORYSA (Q8L4E7) SAP-like protein BP-73 (OsBP-73) (Riaa1)| Length = 375 Score = 108 bits (270), Expect = 2e-23 Identities = 67/139 (48%), Positives = 82/139 (58%), Gaps = 1/139 (0%) Frame = -1 Query: 687 AKPVVNGMTEAGLEAKAPLEEEIAPDGPDSVSPYEPDSVIAAEDASLDDFV-VPDDESDL 511 A+ V+N + +A EAK LE + A D PDSVS +EP+SVI E+ SLDD + DDE D Sbjct: 240 AERVINNINDAVQEAKPTLENKAATDEPDSVSTFEPNSVIEPENLSLDDLDHISDDEPDA 299 Query: 510 LDTSEPDDYLEPLXXXXXXXXXXXXXXXXXXXSQEGSPSLEVSDLSSLKVTELRELAKSR 331 DT EP + S G P DLS+LKVTELRELAKSR Sbjct: 300 SDTDEPSGEYDEPSLQIPSVPIIDESHDTTLKSSLGGP-----DLSTLKVTELRELAKSR 354 Query: 330 GLRGYSKMKKSDLVALLSD 274 G++GYSKMKK+DLV LLS+ Sbjct: 355 GIKGYSKMKKNDLVELLSN 373
>RHO_MYCLE (P45835) Transcription termination factor rho (EC 3.6.1.-)| (ATP-dependent helicase rho) Length = 610 Score = 38.5 bits (88), Expect = 0.020 Identities = 21/63 (33%), Positives = 35/63 (55%) Frame = -1 Query: 396 SLEVSDLSSLKVTELRELAKSRGLRGYSKMKKSDLVALLSDAS*SVGDANPARAHRFASL 217 ++ + LS++ + ELR LA G++G S M+KS+L+A + + G AN + S Sbjct: 35 TVSLGSLSTMVLPELRALANQAGVKGTSGMRKSELIAAIEECR---GQANGTSVNDGPSR 91 Query: 216 SHG 208 HG Sbjct: 92 DHG 94
>RHO_THEMA (P38527) Transcription termination factor rho (EC 3.6.1.-)| (ATP-dependent helicase rho) Length = 427 Score = 37.7 bits (86), Expect = 0.034 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Frame = -1 Query: 408 EGSPSLEVSDLSSLKVTELRELAKSRGLRGYSKMKKSDLV-ALLSDAS*SVG 256 E ++ +S+L S+ + +L E+AKS G+ Y+ M+K DL+ A+L + S G Sbjct: 3 EEQKTISISELESMNIKQLYEIAKSLGIPRYTSMRKRDLIFAILKAQTESTG 54
>RHO_MICLU (P52154) Transcription termination factor rho (EC 3.6.1.-)| (ATP-dependent helicase rho) Length = 690 Score = 37.4 bits (85), Expect = 0.044 Identities = 17/35 (48%), Positives = 26/35 (74%) Frame = -1 Query: 378 LSSLKVTELRELAKSRGLRGYSKMKKSDLVALLSD 274 L+SLK+ +L+ LA G+ G S+M+K+DLV +SD Sbjct: 15 LASLKLAQLQALASQLGIAGGSRMRKADLVTAISD 49
>VL96_IRV1 (P22856) L96 protein| Length = 867 Score = 35.0 bits (79), Expect = 0.22 Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 5/45 (11%) Frame = -1 Query: 399 PSLEVSDLSSLKVTELRELAKSRGLRGY-----SKMKKSDLVALL 280 P +DL KV EL+ELAK GL+ + SKM K DLV L Sbjct: 268 PKYRAADLLGKKVVELKELAKMEGLKKWKDKTPSKMLKQDLVDFL 312
>RHO_STRLI (P52157) Transcription termination factor rho (EC 3.6.1.-)| (ATP-dependent helicase rho) Length = 707 Score = 33.9 bits (76), Expect = 0.49 Identities = 19/57 (33%), Positives = 35/57 (61%) Frame = -1 Query: 405 GSPSLEVSDLSSLKVTELRELAKSRGLRGYSKMKKSDLVALLSDAS*SVGDANPARA 235 GS + L + + EL+++A G+RG ++M+KS L+ ++ +A + G A PA+A Sbjct: 31 GSRRRRGTGLEGMVLAELQQVASGLGIRGTARMRKSQLIEVIKEAQ-AAGGA-PAKA 85
>FTSY_SYNY3 (P73930) Cell division protein ftsY homolog| Length = 504 Score = 33.1 bits (74), Expect = 0.83 Identities = 19/64 (29%), Positives = 29/64 (45%) Frame = -1 Query: 669 GMTEAGLEAKAPLEEEIAPDGPDSVSPYEPDSVIAAEDASLDDFVVPDDESDLLDTSEPD 490 G E+ P E++P+ V E +S + ED+ + P E DT+ PD Sbjct: 10 GKDNTAPESAPPEGAEVSPELAPEVIQAETESP-SEEDSQTTELAAPPPEEPSSDTANPD 68 Query: 489 DYLE 478 DYL+ Sbjct: 69 DYLQ 72
>CDS1_YEAST (P38221) Phosphatidate cytidylyltransferase (EC 2.7.7.41)| (CDP-diglyceride synthetase) (CDP-diglyceride pyrophosphorylase) (CDP-diacylglycerol synthase) (CDS) (CTP:phosphatidate cytidylyltransferase) (CDP-DAG synthase) (CDP-DG synthetase) Length = 457 Score = 33.1 bits (74), Expect = 0.83 Identities = 16/56 (28%), Positives = 31/56 (55%) Frame = -1 Query: 699 PDAGAKPVVNGMTEAGLEAKAPLEEEIAPDGPDSVSPYEPDSVIAAEDASLDDFVV 532 P +K +V +T+A +A L+EE+ D +SV+P +S A +++ +F + Sbjct: 9 PHGTSKEIVESVTDATSKAIDKLQEELHKDASESVTPVTKESTAATKESRKYNFFI 64
>PP1RA_XENLA (Q6GLQ4) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 Length = 819 Score = 33.1 bits (74), Expect = 0.83 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Frame = -1 Query: 660 EAGLEAKAPLEEEIAPD-----GPDSVSPYEPDSVIAAEDASLDDFVVPDDESDLLDTSE 496 E G+ + L +E PD P+S P P + ED S+DD V P+ ++ Sbjct: 482 EMGILQEIFLSKESVPDTPHEPDPESYEPSPPKLIPLDEDCSMDDGVYPESMDQSTESQS 541 Query: 495 PD 490 PD Sbjct: 542 PD 543
>BIGA_SALTY (P25927) Putative surface-exposed virulence protein bigA precursor| Length = 1953 Score = 32.3 bits (72), Expect = 1.4 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 9/80 (11%) Frame = -1 Query: 699 PDAGAKPVVNGMTEAGLEAKAPLEE----EIAP---DGPDSVSPYEP--DSVIAAEDASL 547 PD G V ++G + AP ++ ++ P G D V+P + D + D S Sbjct: 128 PDDGGDDNVTPPDDSGDDDVAPPDDSGDDDVTPPDDSGDDDVTPPDDSGDGDVTPPDDSG 187 Query: 546 DDFVVPDDESDLLDTSEPDD 487 DD V P D+S D + PDD Sbjct: 188 DDDVTPPDDSGDDDVTPPDD 207 Score = 29.6 bits (65), Expect = 9.2 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%) Frame = -1 Query: 630 EEEIAP---DGPDSVSPYEP--DSVIAAEDASLDDFVVPDDESDLLDTSEPDD 487 ++++ P G D V+P + D + D S DD V P D+S D + PDD Sbjct: 188 DDDVTPPDDSGDDDVTPPDDSGDDDVTPPDDSGDDDVTPPDDSGDDDVTPPDD 240
>Y3348_STRCO (Q9X8H1) Hypothetical protein SCO3348| Length = 309 Score = 32.0 bits (71), Expect = 1.9 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Frame = -1 Query: 690 GAKPVVNGMTEAGLEAKAPLEEE--IAPDGPDSVSPYEPDSVIAAEDASLDDFVVPDDES 517 GA+P+ + L L+E+ I PDG D ++ +++ AAED ++D ++P S Sbjct: 23 GARPLPAHSHKVELRLAQLLDEDGAIGPDGVDQLAAVVREALQAAEDKGVED-LLPFATS 81 Query: 516 DLLDTSEPDDYL 481 + + S DD L Sbjct: 82 AVREASNADDVL 93
>MAGC1_HUMAN (O60732) Melanoma-associated antigen C1 (MAGE-C1 antigen)| (Cancer-testis antigen CT7) Length = 1142 Score = 32.0 bits (71), Expect = 1.9 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%) Frame = -1 Query: 654 GLEAKAPLEE-EIAPDGPDSVSPYE-PDSVIAAEDASLDDFVVPDDESDLLDTSEP 493 G+ +++PL+ E AP+G DS+SP + P S + ED SL P + D+ P Sbjct: 669 GMHSQSPLQSPESAPEGEDSLSPLQIPQSPLEGED-SLSSLHFPQSPPEWEDSLSP 723
>RHO_NEIGO (Q06447) Transcription termination factor rho (EC 3.6.1.-)| (ATP-dependent helicase rho) Length = 419 Score = 32.0 bits (71), Expect = 1.9 Identities = 13/35 (37%), Positives = 24/35 (68%) Frame = -1 Query: 393 LEVSDLSSLKVTELRELAKSRGLRGYSKMKKSDLV 289 + VS+L +L +++L ELA+ G+ ++ +K DLV Sbjct: 1 MHVSELQTLHISKLLELAEEHGIENANRFRKQDLV 35
>ECR_BOMMO (P49881) Ecdysone receptor (Ecdysteroid receptor)| (20-hydroxy-ecdysone receptor) (20E receptor) (EcRH) Length = 606 Score = 31.6 bits (70), Expect = 2.4 Identities = 21/60 (35%), Positives = 34/60 (56%) Frame = -1 Query: 399 PSLEVSDLSSLKVTELRELAKSRGLRGYSKMKKSDLVALLSDAS*SVGDANPARAHRFAS 220 P ++++++ L V + E AK GL G+SK+ +SD + LL +S V AR + AS Sbjct: 394 PFRQITEMTILTVQLIVEFAK--GLPGFSKISQSDQITLLKASSSEVMMLRVARRYDAAS 451
>RHO_MYCTU (P66028) Transcription termination factor rho (EC 3.6.1.-)| (ATP-dependent helicase rho) Length = 602 Score = 31.2 bits (69), Expect = 3.2 Identities = 13/35 (37%), Positives = 25/35 (71%) Frame = -1 Query: 378 LSSLKVTELRELAKSRGLRGYSKMKKSDLVALLSD 274 L+++ + ELR LA G++G S M+K++L+A + + Sbjct: 37 LATMVLPELRALANRAGVKGTSGMRKNELIAAIEE 71
>RHO_MYCBO (P66029) Transcription termination factor rho (EC 3.6.1.-)| (ATP-dependent helicase rho) Length = 602 Score = 31.2 bits (69), Expect = 3.2 Identities = 13/35 (37%), Positives = 25/35 (71%) Frame = -1 Query: 378 LSSLKVTELRELAKSRGLRGYSKMKKSDLVALLSD 274 L+++ + ELR LA G++G S M+K++L+A + + Sbjct: 37 LATMVLPELRALANRAGVKGTSGMRKNELIAAIEE 71
>SRS1_ORYSA (P83649) Salt-stress root protein RS1| Length = 204 Score = 30.8 bits (68), Expect = 4.1 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%) Frame = -1 Query: 690 GAKPVVNGMTEAGLEAKAP----LEEEIAPDGPDSVSPYEPDSVIAAEDASLDDFVVPDD 523 GAKPV + + ++G +P + E++AP P EP++ AAE S + V + Sbjct: 98 GAKPVSDAVAKSGTTPLSPAIAFILEKVAPFVPKEEPKPEPEAEAAAETTSREVAVEEEK 157 Query: 522 ESDLLDTSEP 493 + + +EP Sbjct: 158 KEEEAAPAEP 167
>VIEN_NPVAC (P24647) Immediate-early regulatory protein IE-N| Length = 408 Score = 30.4 bits (67), Expect = 5.4 Identities = 18/61 (29%), Positives = 26/61 (42%) Frame = -1 Query: 660 EAGLEAKAPLEEEIAPDGPDSVSPYEPDSVIAAEDASLDDFVVPDDESDLLDTSEPDDYL 481 + GL+ +A L EIAP P Y P+ VI P + SEP++ + Sbjct: 144 QRGLDLEAQLMNEIAPRSPTYSPSYSPNYVIPQSPDLFASPQSPQPQQQQQQQSEPEEEV 203 Query: 480 E 478 E Sbjct: 204 E 204
>RHO_BACSU (Q03222) Transcription termination factor rho (EC 3.6.1.-)| (ATP-dependent helicase rho) Length = 427 Score = 30.4 bits (67), Expect = 5.4 Identities = 14/42 (33%), Positives = 26/42 (61%) Frame = -1 Query: 393 LEVSDLSSLKVTELRELAKSRGLRGYSKMKKSDLVALLSDAS 268 + +S L ++K+ EL ELA+ + YSK+ K +L+ + A+ Sbjct: 4 VSISSLENMKLKELYELARHYKISYYSKLTKKELIFAILKAN 45
>ECR_MANSE (P49883) Ecdysone receptor (Ecdysteroid receptor)| (20-hydroxy-ecdysone receptor) (20E receptor) (EcRH) Length = 556 Score = 30.4 bits (67), Expect = 5.4 Identities = 20/60 (33%), Positives = 34/60 (56%) Frame = -1 Query: 399 PSLEVSDLSSLKVTELRELAKSRGLRGYSKMKKSDLVALLSDAS*SVGDANPARAHRFAS 220 P ++++++ L V + E AK GL G+SK+ +SD + LL +S V AR + A+ Sbjct: 336 PFRQITEMTILTVQLIVEFAK--GLPGFSKISQSDQITLLKASSSEVMMLRVARRYDAAT 393
>K0174_HUMAN (P53990) Protein KIAA0174 (Putative MAPK-activating protein PM28)| Length = 364 Score = 30.0 bits (66), Expect = 7.1 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = -1 Query: 591 PYEPDSVIAAEDASLDDFVVPDDESDLLDTSEPDD 487 PYEPDSV+ AE P E+DL+D DD Sbjct: 176 PYEPDSVVMAE-------APPGVETDLIDVGFTDD 203
>ZMPB_STRPN (Q9L7Q2) Zinc metalloprotease zmpB precursor (EC 3.4.24.-)| Length = 1906 Score = 30.0 bits (66), Expect = 7.1 Identities = 20/66 (30%), Positives = 30/66 (45%) Frame = -1 Query: 684 KPVVNGMTEAGLEAKAPLEEEIAPDGPDSVSPYEPDSVIAAEDASLDDFVVPDDESDLLD 505 KP E E AP E+E AP P+ P P+ A E+ + PD +++ + Sbjct: 271 KPAEESKVEQAGEPVAPREDEKAPVEPEK-QPEAPEEEKAVEETPKQEESTPDTKAE--E 327 Query: 504 TSEPDD 487 T EP + Sbjct: 328 TVEPKE 333 Score = 29.6 bits (65), Expect = 9.2 Identities = 21/69 (30%), Positives = 32/69 (46%) Frame = -1 Query: 684 KPVVNGMTEAGLEAKAPLEEEIAPDGPDSVSPYEPDSVIAAEDASLDDFVVPDDESDLLD 505 +P E E AP E+E AP P V P E + E+ ++++ P+D+ + Sbjct: 355 EPTEEPKVEQAGEPVAPREDEQAPTAP--VEP-EKQPEVPEEEKAVEETPKPEDKIKGIG 411 Query: 504 TSEPDDYLE 478 T EP D E Sbjct: 412 TKEPVDKSE 420
>SUCD_STAAW (Q8NX01) Succinyl-CoA synthetase alpha chain (EC 6.2.1.5)| (SCS-alpha) Length = 302 Score = 29.6 bits (65), Expect = 9.2 Identities = 20/68 (29%), Positives = 31/68 (45%) Frame = -1 Query: 681 PVVNGMTEAGLEAKAPLEEEIAPDGPDSVSPYEPDSVIAAEDASLDDFVVPDDESDLLDT 502 PV N + EA E A + P +P+ DS++ A DA LD + + +LD Sbjct: 52 PVFNTVEEAKNETGATVSVIYVP------APFAADSILEAADADLDMVICITEHIPVLDM 105 Query: 501 SEPDDYLE 478 + YL+ Sbjct: 106 VKVKRYLQ 113
>SUCD_STAAS (Q6G9W7) Succinyl-CoA synthetase alpha chain (EC 6.2.1.5)| (SCS-alpha) Length = 302 Score = 29.6 bits (65), Expect = 9.2 Identities = 20/68 (29%), Positives = 31/68 (45%) Frame = -1 Query: 681 PVVNGMTEAGLEAKAPLEEEIAPDGPDSVSPYEPDSVIAAEDASLDDFVVPDDESDLLDT 502 PV N + EA E A + P +P+ DS++ A DA LD + + +LD Sbjct: 52 PVFNTVEEAKNETGATVSVIYVP------APFAADSILEAADADLDMVICITEHIPVLDM 105 Query: 501 SEPDDYLE 478 + YL+ Sbjct: 106 VKVKRYLQ 113
>SUCD_STAAR (Q6GHI9) Succinyl-CoA synthetase alpha chain (EC 6.2.1.5)| (SCS-alpha) Length = 302 Score = 29.6 bits (65), Expect = 9.2 Identities = 20/68 (29%), Positives = 31/68 (45%) Frame = -1 Query: 681 PVVNGMTEAGLEAKAPLEEEIAPDGPDSVSPYEPDSVIAAEDASLDDFVVPDDESDLLDT 502 PV N + EA E A + P +P+ DS++ A DA LD + + +LD Sbjct: 52 PVFNTVEEAKNETGATVSVIYVP------APFAADSILEAADADLDMVICITEHIPVLDM 105 Query: 501 SEPDDYLE 478 + YL+ Sbjct: 106 VKVKRYLQ 113
>SUCD_STAAN (P99070) Succinyl-CoA synthetase alpha chain (EC 6.2.1.5)| (SCS-alpha) Length = 302 Score = 29.6 bits (65), Expect = 9.2 Identities = 20/68 (29%), Positives = 31/68 (45%) Frame = -1 Query: 681 PVVNGMTEAGLEAKAPLEEEIAPDGPDSVSPYEPDSVIAAEDASLDDFVVPDDESDLLDT 502 PV N + EA E A + P +P+ DS++ A DA LD + + +LD Sbjct: 52 PVFNTVEEAKNETGATVSVIYVP------APFAADSILEAADADLDMVICITEHIPVLDM 105 Query: 501 SEPDDYLE 478 + YL+ Sbjct: 106 VKVKRYLQ 113
>SUCD_STAAM (P66866) Succinyl-CoA synthetase alpha chain (EC 6.2.1.5)| (SCS-alpha) Length = 302 Score = 29.6 bits (65), Expect = 9.2 Identities = 20/68 (29%), Positives = 31/68 (45%) Frame = -1 Query: 681 PVVNGMTEAGLEAKAPLEEEIAPDGPDSVSPYEPDSVIAAEDASLDDFVVPDDESDLLDT 502 PV N + EA E A + P +P+ DS++ A DA LD + + +LD Sbjct: 52 PVFNTVEEAKNETGATVSVIYVP------APFAADSILEAADADLDMVICITEHIPVLDM 105 Query: 501 SEPDDYLE 478 + YL+ Sbjct: 106 VKVKRYLQ 113
>SUCD_STAAC (Q5HGI6) Succinyl-CoA synthetase alpha chain (EC 6.2.1.5)| (SCS-alpha) Length = 302 Score = 29.6 bits (65), Expect = 9.2 Identities = 20/68 (29%), Positives = 31/68 (45%) Frame = -1 Query: 681 PVVNGMTEAGLEAKAPLEEEIAPDGPDSVSPYEPDSVIAAEDASLDDFVVPDDESDLLDT 502 PV N + EA E A + P +P+ DS++ A DA LD + + +LD Sbjct: 52 PVFNTVEEAKNETGATVSVIYVP------APFAADSILEAADADLDMVICITEHIPVLDM 105 Query: 501 SEPDDYLE 478 + YL+ Sbjct: 106 VKVKRYLQ 113 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,830,353 Number of Sequences: 219361 Number of extensions: 1535202 Number of successful extensions: 4550 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 4383 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4536 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6969622431 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
