ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags9k10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 551 bits (278), Expect = e-153 Identities = 545/634 (85%) Strand = Plus / Plus Query: 97 cctaatacaaccagccatcgcactccgtagagccacaaaggcatttcttcttcttgatgt 156 ||||||||||||| ||||| ||||| |||||||||| || ||||| ||||||||||||| Sbjct: 27217562 cctaatacaaccaaccatcacactctatagagccacagagacattttttcttcttgatgt 27217621 Query: 157 taccattctcatcataaacctgatctatggcatagttgtagtggtatactagctcttgac 216 ||||||| |||||| |||||||||||| | |||||||||||||||| || ||||| | Sbjct: 27217622 taccattggcatcatgaacctgatctattgtatagttgtagtggtatgaaagttcttggc 27217681 Query: 217 caggtggaatattttcgcaggcaaagaacatgatatgaggagcactcttgtcatcatgat 276 |||||||| | || |||||||||||||| || ||||| |||||||||| ||||||| Sbjct: 27217682 ggggtggaatgtcctcacaggcaaagaacataatgtgaggtacactcttgtcgtcatgat 27217741 Query: 277 catagagggcattctgtgcatagaggttgggggtgcagctatggttaataaattttgcaa 336 |||| ||| |||| |||||||| ||||| |||||||| |||||||| || |||||||||| Sbjct: 27217742 catataggacattttgtgcataaaggttaggggtgcaactatggttgatgaattttgcaa 27217801 Query: 337 agttccccatctttgacgcatcaacagcaaaaccagcttcttcatcattacccggaccat 396 |||| ||||||||||| |||||||||||||| |||||||| ||||| ||| | ||||| | Sbjct: 27217802 agttgcccatctttgaagcatcaacagcaaagccagcttcctcatctttatcaggaccct 27217861 Query: 397 tctgaagcgagggtatagatcttgataggccctcccaaagagtttcatcataataattat 456 ||||||| |||||||| ||||||||||||||||||||||| | ||||||||||||||||| Sbjct: 27217862 tctgaagtgagggtatggatcttgataggccctcccaaagggcttcatcataataattat 27217921 Query: 457 gccctatagcaaataggtactcatcagtcatccttttctgtgcctcttcatcatccagca 516 | || ||||| |||| ||| ||||| ||| ||||||||||||||||||||| |||| || Sbjct: 27217922 gaccaatagcgaataagtattcatcggtcgaccttttctgtgcctcttcatcctccaaca 27217981 Query: 517 cttccccaatgtattcacagacgaagcttccagatggtatatagtcaagagttttcacac 576 |||| |||||||||||||| || ||||||||||||||||| ||||||||||| | || | Sbjct: 27217982 cttctccaatgtattcacatacaaagcttccagatggtatgaagtcaagagttcttactc 27218041 Query: 577 cccaacccatcgatttggtcttgaagacttgcagccgaaatttgatgcctttctggccga 636 |||| |||||| ||||||| ||||||||||||| ||||| | | ||| | || || | Sbjct: 27218042 cccagcccatcaatttggttttgaagacttgcaaacgaaacctaaggccatgttgaccaa 27218101 Query: 637 ctctgttatgacatgtaggaggacacttgcaagaaggtccacactcataaactagaggtt 696 |||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||| Sbjct: 27218102 ctctgttatgacatgtaggagggcacttgcatgaaggtccacactcataaacaagaggtt 27218161 Query: 697 tcgcttcaatgatacggcccatatcattgaaagg 730 | ||||| | ||| ||||| ||||||||||||| Sbjct: 27218162 ttgcttctaagatgcggcctttatcattgaaagg 27218195
>dbj|AK066297.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059A21, full insert sequence Length = 2712 Score = 551 bits (278), Expect = e-153 Identities = 545/634 (85%) Strand = Plus / Minus Query: 97 cctaatacaaccagccatcgcactccgtagagccacaaaggcatttcttcttcttgatgt 156 ||||||||||||| ||||| ||||| |||||||||| || ||||| ||||||||||||| Sbjct: 2659 cctaatacaaccaaccatcacactctatagagccacagagacattttttcttcttgatgt 2600 Query: 157 taccattctcatcataaacctgatctatggcatagttgtagtggtatactagctcttgac 216 ||||||| |||||| |||||||||||| | |||||||||||||||| || ||||| | Sbjct: 2599 taccattggcatcatgaacctgatctattgtatagttgtagtggtatgaaagttcttggc 2540 Query: 217 caggtggaatattttcgcaggcaaagaacatgatatgaggagcactcttgtcatcatgat 276 |||||||| | || |||||||||||||| || ||||| |||||||||| ||||||| Sbjct: 2539 ggggtggaatgtcctcacaggcaaagaacataatgtgaggtacactcttgtcgtcatgat 2480 Query: 277 catagagggcattctgtgcatagaggttgggggtgcagctatggttaataaattttgcaa 336 |||| ||| |||| |||||||| ||||| |||||||| |||||||| || |||||||||| Sbjct: 2479 catataggacattttgtgcataaaggttaggggtgcaactatggttgatgaattttgcaa 2420 Query: 337 agttccccatctttgacgcatcaacagcaaaaccagcttcttcatcattacccggaccat 396 |||| ||||||||||| |||||||||||||| |||||||| ||||| ||| | ||||| | Sbjct: 2419 agttgcccatctttgaagcatcaacagcaaagccagcttcctcatctttatcaggaccct 2360 Query: 397 tctgaagcgagggtatagatcttgataggccctcccaaagagtttcatcataataattat 456 ||||||| |||||||| ||||||||||||||||||||||| | ||||||||||||||||| Sbjct: 2359 tctgaagtgagggtatggatcttgataggccctcccaaagggcttcatcataataattat 2300 Query: 457 gccctatagcaaataggtactcatcagtcatccttttctgtgcctcttcatcatccagca 516 | || ||||| |||| ||| ||||| ||| ||||||||||||||||||||| |||| || Sbjct: 2299 gaccaatagcgaataagtattcatcggtcgaccttttctgtgcctcttcatcctccaaca 2240 Query: 517 cttccccaatgtattcacagacgaagcttccagatggtatatagtcaagagttttcacac 576 |||| |||||||||||||| || ||||||||||||||||| ||||||||||| | || | Sbjct: 2239 cttctccaatgtattcacatacaaagcttccagatggtatgaagtcaagagttcttactc 2180 Query: 577 cccaacccatcgatttggtcttgaagacttgcagccgaaatttgatgcctttctggccga 636 |||| |||||| ||||||| ||||||||||||| ||||| | | ||| | || || | Sbjct: 2179 cccagcccatcaatttggttttgaagacttgcaaacgaaacctaaggccatgttgaccaa 2120 Query: 637 ctctgttatgacatgtaggaggacacttgcaagaaggtccacactcataaactagaggtt 696 |||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||| Sbjct: 2119 ctctgttatgacatgtaggagggcacttgcatgaaggtccacactcataaacaagaggtt 2060 Query: 697 tcgcttcaatgatacggcccatatcattgaaagg 730 | ||||| | ||| ||||| ||||||||||||| Sbjct: 2059 ttgcttctaagatgcggcctttatcattgaaagg 2026
>emb|AL606728.3|OSJN00102 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0038F03, complete sequence Length = 136656 Score = 551 bits (278), Expect = e-153 Identities = 545/634 (85%) Strand = Plus / Plus Query: 97 cctaatacaaccagccatcgcactccgtagagccacaaaggcatttcttcttcttgatgt 156 ||||||||||||| ||||| ||||| |||||||||| || ||||| ||||||||||||| Sbjct: 48651 cctaatacaaccaaccatcacactctatagagccacagagacattttttcttcttgatgt 48710 Query: 157 taccattctcatcataaacctgatctatggcatagttgtagtggtatactagctcttgac 216 ||||||| |||||| |||||||||||| | |||||||||||||||| || ||||| | Sbjct: 48711 taccattggcatcatgaacctgatctattgtatagttgtagtggtatgaaagttcttggc 48770 Query: 217 caggtggaatattttcgcaggcaaagaacatgatatgaggagcactcttgtcatcatgat 276 |||||||| | || |||||||||||||| || ||||| |||||||||| ||||||| Sbjct: 48771 ggggtggaatgtcctcacaggcaaagaacataatgtgaggtacactcttgtcgtcatgat 48830 Query: 277 catagagggcattctgtgcatagaggttgggggtgcagctatggttaataaattttgcaa 336 |||| ||| |||| |||||||| ||||| |||||||| |||||||| || |||||||||| Sbjct: 48831 catataggacattttgtgcataaaggttaggggtgcaactatggttgatgaattttgcaa 48890 Query: 337 agttccccatctttgacgcatcaacagcaaaaccagcttcttcatcattacccggaccat 396 |||| ||||||||||| |||||||||||||| |||||||| ||||| ||| | ||||| | Sbjct: 48891 agttgcccatctttgaagcatcaacagcaaagccagcttcctcatctttatcaggaccct 48950 Query: 397 tctgaagcgagggtatagatcttgataggccctcccaaagagtttcatcataataattat 456 ||||||| |||||||| ||||||||||||||||||||||| | ||||||||||||||||| Sbjct: 48951 tctgaagtgagggtatggatcttgataggccctcccaaagggcttcatcataataattat 49010 Query: 457 gccctatagcaaataggtactcatcagtcatccttttctgtgcctcttcatcatccagca 516 | || ||||| |||| ||| ||||| ||| ||||||||||||||||||||| |||| || Sbjct: 49011 gaccaatagcgaataagtattcatcggtcgaccttttctgtgcctcttcatcctccaaca 49070 Query: 517 cttccccaatgtattcacagacgaagcttccagatggtatatagtcaagagttttcacac 576 |||| |||||||||||||| || ||||||||||||||||| ||||||||||| | || | Sbjct: 49071 cttctccaatgtattcacatacaaagcttccagatggtatgaagtcaagagttcttactc 49130 Query: 577 cccaacccatcgatttggtcttgaagacttgcagccgaaatttgatgcctttctggccga 636 |||| |||||| ||||||| ||||||||||||| ||||| | | ||| | || || | Sbjct: 49131 cccagcccatcaatttggttttgaagacttgcaaacgaaacctaaggccatgttgaccaa 49190 Query: 637 ctctgttatgacatgtaggaggacacttgcaagaaggtccacactcataaactagaggtt 696 |||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||| Sbjct: 49191 ctctgttatgacatgtaggagggcacttgcatgaaggtccacactcataaacaagaggtt 49250 Query: 697 tcgcttcaatgatacggcccatatcattgaaagg 730 | ||||| | ||| ||||| ||||||||||||| Sbjct: 49251 ttgcttctaagatgcggcctttatcattgaaagg 49284
>ref|XM_473383.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2526 Score = 549 bits (277), Expect = e-153 Identities = 544/633 (85%) Strand = Plus / Minus Query: 98 ctaatacaaccagccatcgcactccgtagagccacaaaggcatttcttcttcttgatgtt 157 |||||||||||| ||||| ||||| |||||||||| || ||||| |||||||||||||| Sbjct: 2526 ctaatacaaccaaccatcacactctatagagccacagagacattttttcttcttgatgtt 2467 Query: 158 accattctcatcataaacctgatctatggcatagttgtagtggtatactagctcttgacc 217 |||||| |||||| |||||||||||| | |||||||||||||||| || ||||| | Sbjct: 2466 accattggcatcatgaacctgatctattgtatagttgtagtggtatgaaagttcttggcg 2407 Query: 218 aggtggaatattttcgcaggcaaagaacatgatatgaggagcactcttgtcatcatgatc 277 |||||||| | || |||||||||||||| || ||||| |||||||||| |||||||| Sbjct: 2406 gggtggaatgtcctcacaggcaaagaacataatgtgaggtacactcttgtcgtcatgatc 2347 Query: 278 atagagggcattctgtgcatagaggttgggggtgcagctatggttaataaattttgcaaa 337 ||| ||| |||| |||||||| ||||| |||||||| |||||||| || ||||||||||| Sbjct: 2346 atataggacattttgtgcataaaggttaggggtgcaactatggttgatgaattttgcaaa 2287 Query: 338 gttccccatctttgacgcatcaacagcaaaaccagcttcttcatcattacccggaccatt 397 ||| ||||||||||| |||||||||||||| |||||||| ||||| ||| | ||||| || Sbjct: 2286 gttgcccatctttgaagcatcaacagcaaagccagcttcctcatctttatcaggaccctt 2227 Query: 398 ctgaagcgagggtatagatcttgataggccctcccaaagagtttcatcataataattatg 457 |||||| |||||||| ||||||||||||||||||||||| | |||||||||||||||||| Sbjct: 2226 ctgaagtgagggtatggatcttgataggccctcccaaagggcttcatcataataattatg 2167 Query: 458 ccctatagcaaataggtactcatcagtcatccttttctgtgcctcttcatcatccagcac 517 || ||||| |||| ||| ||||| ||| ||||||||||||||||||||| |||| ||| Sbjct: 2166 accaatagcgaataagtattcatcggtcgaccttttctgtgcctcttcatcctccaacac 2107 Query: 518 ttccccaatgtattcacagacgaagcttccagatggtatatagtcaagagttttcacacc 577 ||| |||||||||||||| || ||||||||||||||||| ||||||||||| | || || Sbjct: 2106 ttctccaatgtattcacatacaaagcttccagatggtatgaagtcaagagttcttactcc 2047 Query: 578 ccaacccatcgatttggtcttgaagacttgcagccgaaatttgatgcctttctggccgac 637 ||| |||||| ||||||| ||||||||||||| ||||| | | ||| | || || || Sbjct: 2046 ccagcccatcaatttggttttgaagacttgcaaacgaaacctaaggccatgttgaccaac 1987 Query: 638 tctgttatgacatgtaggaggacacttgcaagaaggtccacactcataaactagaggttt 697 ||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| Sbjct: 1986 tctgttatgacatgtaggagggcacttgcatgaaggtccacactcataaacaagaggttt 1927 Query: 698 cgcttcaatgatacggcccatatcattgaaagg 730 ||||| | ||| ||||| ||||||||||||| Sbjct: 1926 tgcttctaagatgcggcctttatcattgaaagg 1894
>gb|AY122272.1| Zea mays cultivar B73 SET domain-containing protein SET104 (SET104) mRNA, complete cds Length = 2930 Score = 470 bits (237), Expect = e-129 Identities = 538/637 (84%), Gaps = 6/637 (0%) Strand = Plus / Minus Query: 100 aatacaaccagccatcgcactccgtagagccacaaaggcatttcttcttcttgatgttac 159 |||||| ||||||||| ||||| |||||||||||||||||||||||||||||||| | Sbjct: 2783 aatacagccagccatcacactcaaccgagccacaaaggcatttcttcttcttgatgttcc 2724 Query: 160 cattctcatcataaacctgatctatggcatagttgtagtggtatactagctcttgaccag 219 |||| |||||| |||||||||||| ||| |||||||||||| |||| |||||| | Sbjct: 2723 cattggcatcatgaacctgatctattttataattgtagtggtatgctagttcttgattgg 2664 Query: 220 gtggaatattttcgcaggcaaagaacatgatatgaggagcactcttgtcatcatgatcat 279 || |||||| ||||| |||||||||||||||||||| |||| | || || ||||||| Sbjct: 2663 gtcgaatatcatcgcaagcaaagaacatgatatgaggcacactgatttcttcgtgatcat 2604 Query: 280 agagggcattctgtgcatagaggttgggggtgcagctatggttaataaattttgcaaagt 339 | ||| | || |||||||| | ||| |||||||| | || || |||||||||||||||| Sbjct: 2603 aaaggacgttttgtgcatatatgtttggggtgcaattgtgattgataaattttgcaaagt 2544 Query: 340 tccccatctttgacgcatcaacagcaaaaccagcttc---ttcatcat---tacccggac 393 ||||||||| ||| |||||||||||||| |||| ||| |||||||| | ||||||| Sbjct: 2543 tccccatctctgaagcatcaacagcaaatccagtttcattttcatcatctttgcccggac 2484 Query: 394 cattctgaagcgagggtatagatcttgataggccctcccaaagagtttcatcataataat 453 | |||||||| || ||||||||||||||||||||||||||||||| | ||||||||||| Sbjct: 2483 ccttctgaagtgacggtatagatcttgataggccctcccaaagagacttatcataataat 2424 Query: 454 tatgccctatagcaaataggtactcatcagtcatccttttctgtgcctcttcatcatcca 513 | ||||| |||||||||| ||||||||| || ||||||| ||||| |||||||| |||| Sbjct: 2423 tgtgcccaatagcaaataaatactcatcattcgtccttttttgtgcttcttcatcctcca 2364 Query: 514 gcacttccccaatgtattcacagacgaagcttccagatggtatatagtcaagagttttca 573 |||||| || || |||||||| || ||||||||||||||||| | ||||||||| ||| Sbjct: 2363 acacttcacctatatattcacacacaaagcttccagatggtatgaattcaagagttctca 2304 Query: 574 caccccaacccatcgatttggtcttgaagacttgcagccgaaatttgatgcctttctggc 633 ||||||||||||| ||||| || ||||||| |||||||||||| |||| || | |||| Sbjct: 2303 caccccaacccattgattttgttttgaagatttgcagccgaaacttgagcccatgttggc 2244 Query: 634 cgactctgttatgacatgtaggaggacacttgcaagaaggtccacactcataaactagag 693 | |||||||| |||||||||||||| |||||||||||||| |||||||||||||| |||| Sbjct: 2243 caactctgttgtgacatgtaggagggcacttgcaagaaggaccacactcataaacgagag 2184 Query: 694 gtttcgcttcaatgatacggcccatatcattgaaagg 730 |||| ||||| | |||||||| ||||||||||||| Sbjct: 2183 gttttgcttctacaatacggcctttatcattgaaagg 2147
>gb|AY108270.1| Zea mays PCO145900 mRNA sequence Length = 673 Score = 359 bits (181), Expect = 8e-96 Identities = 428/509 (84%), Gaps = 6/509 (1%) Strand = Plus / Minus Query: 100 aatacaaccagccatcgcactccgtagagccacaaaggcatttcttcttcttgatgttac 159 |||||| ||||||||| ||||| |||||||||||||||||||||||||||||||| | Sbjct: 516 aatacagccagccatcacactcaaccgagccacaaaggcatttcttcttcttgatgttcc 457 Query: 160 cattctcatcataaacctgatctatggcatagttgtagtggtatactagctcttgaccag 219 |||| |||||| |||||||||||| ||| |||||||||||| |||| |||||| | Sbjct: 456 cattggcatcatgaacctgatctattttataattgtagtggtatgctagttcttgattgg 397 Query: 220 gtggaatattttcgcaggcaaagaacatgatatgaggagcactcttgtcatcatgatcat 279 || |||||| ||||| |||||||||||||||||||| |||| | || || ||||||| Sbjct: 396 gtcgaatatcatcgcaagcaaagaacatgatatgaggcacactgatatcttcgtgatcat 337 Query: 280 agagggcattctgtgcatagaggttgggggtgcagctatggttaataaattttgcaaagt 339 | ||| | || |||||||| | ||| |||||||| | || || |||||||||||||||| Sbjct: 336 aaaggacgttttgtgcatatatgtttggggtgcaattgtgattgataaattttgcaaagt 277 Query: 340 tccccatctttgacgcatcaacagcaaaaccagcttc---ttcatcat---tacccggac 393 ||||||||| ||| |||||||||||||| |||| ||| |||||||| | ||||||| Sbjct: 276 tccccatctctgaagcatcaacagcaaatccagtttcattttcatcatctttgcccggac 217 Query: 394 cattctgaagcgagggtatagatcttgataggccctcccaaagagtttcatcataataat 453 | |||||||| || ||||||||||||||||||||||||||||||| | ||||||||||| Sbjct: 216 ccttctgaagtgacggtatagatcttgataggccctcccaaagagacttatcataataat 157 Query: 454 tatgccctatagcaaataggtactcatcagtcatccttttctgtgcctcttcatcatcca 513 | ||||| |||||||||| ||||||||| || ||||||| ||||| |||||||| |||| Sbjct: 156 tgtgcccaatagcaaataaatactcatcattcgtccttttttgtgcttcttcatcctcca 97 Query: 514 gcacttccccaatgtattcacagacgaagcttccagatggtatatagtcaagagttttca 573 |||||| || || |||||||| || ||||||||||||||||| | ||||||||| ||| Sbjct: 96 acacttcacctatatattcacacacaaagcttccagatggtatgaattcaagagttctca 37 Query: 574 caccccaacccatcgatttggtcttgaag 602 ||||||||||||| ||||| || |||||| Sbjct: 36 caccccaacccattgattttgttttgaag 8
>emb|CR931735.1| Medicago truncatula chromosome 5 clone mth2-37f4, COMPLETE SEQUENCE Length = 114414 Score = 73.8 bits (37), Expect = 7e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 237 gcaaagaacatgatatgaggagcactcttgtcatcatgatcatagagggcattctgtgca 296 ||||| ||||||| ||||||| | || ||||||| |||||||| ||| ||||||| ||| Sbjct: 71577 gcaaataacatgacatgaggaaccctgttgtcatggtgatcataaaggacattctgggca 71518 Query: 297 tagaggttgggggtgcagctatggttaat 325 ||||| ||||||| ||| ||||||||||| Sbjct: 71517 tagagattgggggagcaactatggttaat 71489
>gb|AC146572.11| Medicago truncatula clone mth2-104c10, complete sequence Length = 109548 Score = 73.8 bits (37), Expect = 7e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 237 gcaaagaacatgatatgaggagcactcttgtcatcatgatcatagagggcattctgtgca 296 ||||| ||||||| ||||||| | || ||||||| |||||||| ||| ||||||| ||| Sbjct: 1270 gcaaataacatgacatgaggaaccctgttgtcatggtgatcataaaggacattctgggca 1211 Query: 297 tagaggttgggggtgcagctatggttaat 325 ||||| ||||||| ||| ||||||||||| Sbjct: 1210 tagagattgggggagcaactatggttaat 1182
>ref|XM_482259.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3522 Score = 50.1 bits (25), Expect = 0.010 Identities = 76/93 (81%) Strand = Plus / Minus Query: 237 gcaaagaacatgatatgaggagcactcttgtcatcatgatcatagagggcattctgtgca 296 ||||||||||||||||| || | || | |||||||||||| | || |||| |||||| Sbjct: 3383 gcaaagaacatgatatggggcaccctttggtcatcatgatcccaaagcacattttgtgca 3324 Query: 297 tagaggttgggggtgcagctatggttaataaat 329 |||||||| || | ||| |||||||| |||||| Sbjct: 3323 tagaggttaggtgagcaactatggttgataaat 3291
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 50.1 bits (25), Expect = 0.010 Identities = 76/93 (81%) Strand = Plus / Minus Query: 237 gcaaagaacatgatatgaggagcactcttgtcatcatgatcatagagggcattctgtgca 296 ||||||||||||||||| || | || | |||||||||||| | || |||| |||||| Sbjct: 19082117 gcaaagaacatgatatggggcaccctttggtcatcatgatcccaaagcacattttgtgca 19082058 Query: 297 tagaggttgggggtgcagctatggttaataaat 329 |||||||| || | ||| |||||||| |||||| Sbjct: 19082057 tagaggttaggtgagcaactatggttgataaat 19082025
>dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1051_A08 Length = 137583 Score = 50.1 bits (25), Expect = 0.010 Identities = 76/93 (81%) Strand = Plus / Minus Query: 237 gcaaagaacatgatatgaggagcactcttgtcatcatgatcatagagggcattctgtgca 296 ||||||||||||||||| || | || | |||||||||||| | || |||| |||||| Sbjct: 106904 gcaaagaacatgatatggggcaccctttggtcatcatgatcccaaagcacattttgtgca 106845 Query: 297 tagaggttgggggtgcagctatggttaataaat 329 |||||||| || | ||| |||||||| |||||| Sbjct: 106844 tagaggttaggtgagcaactatggttgataaat 106812
>dbj|AP005388.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0086F04 Length = 163579 Score = 50.1 bits (25), Expect = 0.010 Identities = 76/93 (81%) Strand = Plus / Minus Query: 237 gcaaagaacatgatatgaggagcactcttgtcatcatgatcatagagggcattctgtgca 296 ||||||||||||||||| || | || | |||||||||||| | || |||| |||||| Sbjct: 4482 gcaaagaacatgatatggggcaccctttggtcatcatgatcccaaagcacattttgtgca 4423 Query: 297 tagaggttgggggtgcagctatggttaataaat 329 |||||||| || | ||| |||||||| |||||| Sbjct: 4422 tagaggttaggtgagcaactatggttgataaat 4390
>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome Length = 4303871 Score = 48.1 bits (24), Expect = 0.041 Identities = 24/24 (100%) Strand = Plus / Minus Query: 357 tcaacagcaaaaccagcttcttca 380 |||||||||||||||||||||||| Sbjct: 38006 tcaacagcaaaaccagcttcttca 37983
>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete sequence Length = 2105742 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Plus Query: 499 cctcttcatcatccagcacttc 520 |||||||||||||||||||||| Sbjct: 1417232 cctcttcatcatccagcacttc 1417253
>ref|XM_659206.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6694.2), mRNA Length = 3906 Score = 44.1 bits (22), Expect = 0.64 Identities = 25/26 (96%) Strand = Plus / Plus Query: 480 tcagtcatccttttctgtgcctcttc 505 ||||||||||||||||| |||||||| Sbjct: 2262 tcagtcatccttttctgcgcctcttc 2287
>gb|AC150561.4| Bos taurus BAC CH240-184G17 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 227834 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 310 tgcagctatggttaataaattttgc 334 ||||| ||||||||||||||||||| Sbjct: 78572 tgcagttatggttaataaattttgc 78548
>gb|AF547753.1| Lysimachia heterogenea tRNA-Leu (trnL) gene, partial sequence; trnL (UAA)-trnF (GAA) intergenic spacer region, complete sequence; chloroplast genes for chloroplast product Length = 780 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 704 aatgatacggcccatatcatt 724 ||||||||||||||||||||| Sbjct: 633 aatgatacggcccatatcatt 613
>gb|AC026228.6| Homo sapiens chromosome 10 clone RP11-95G14, complete sequence Length = 179967 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 313 agctatggttaataaattttg 333 ||||||||||||||||||||| Sbjct: 12331 agctatggttaataaattttg 12311
>emb|AL161509.2|ATCHRIV21 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 21 Length = 195837 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 541 agcttccagatggtatatagt 561 ||||||||||||||||||||| Sbjct: 7245 agcttccagatggtatatagt 7225
>gb|AC022025.8| Homo sapiens chromosome 10 clone RP11-489D8, complete sequence Length = 189762 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 313 agctatggttaataaattttg 333 ||||||||||||||||||||| Sbjct: 153630 agctatggttaataaattttg 153610
>gb|AC006266.1|AC006266 Arabidopsis thaliana BAC F1K3 from chromosome IV near 21 cM, complete sequence Length = 105680 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 541 agcttccagatggtatatagt 561 ||||||||||||||||||||| Sbjct: 70181 agcttccagatggtatatagt 70161
>emb|AL953859.7| Zebrafish DNA sequence from clone DKEY-53P21, complete sequence Length = 203360 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 158 accattctcatcataaacctg 178 ||||||||||||||||||||| Sbjct: 7987 accattctcatcataaacctg 8007
>dbj|AP006659.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT12L15, TM0344, complete sequence Length = 87645 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 641 gttatgacatgtaggaggaca 661 ||||||||||||||||||||| Sbjct: 10468 gttatgacatgtaggaggaca 10448 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,806,547 Number of Sequences: 3902068 Number of extensions: 7806547 Number of successful extensions: 142518 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 142295 Number of HSP's gapped (non-prelim): 216 length of query: 730 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 707 effective length of database: 17,143,297,704 effective search space: 12120311476728 effective search space used: 12120311476728 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
