ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags9k03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC109644.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0459F09, complete sequence Length = 143533 Score = 79.8 bits (40), Expect = 2e-12 Identities = 74/87 (85%) Strand = Plus / Plus Query: 56 ctacttctccggnggcgaggtcagctgccttangntgaatttcgaaagctctttgtntnt 115 |||||||||||| || |||||||||||||||| | |||| || | |||||||||| | Sbjct: 92672 ctacttctccggtggtgaggtcagctgccttaagttgaactttgcgagctctttgtacct 92731 Query: 116 ctccaccactccaatcatgcatatagt 142 ||| ||||| ||||||||||||||||| Sbjct: 92732 ctcgaccaccccaatcatgcatatagt 92758
>gb|AC144559.1| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0459F09, complete sequence Length = 143533 Score = 79.8 bits (40), Expect = 2e-12 Identities = 74/87 (85%) Strand = Plus / Plus Query: 56 ctacttctccggnggcgaggtcagctgccttangntgaatttcgaaagctctttgtntnt 115 |||||||||||| || |||||||||||||||| | |||| || | |||||||||| | Sbjct: 92672 ctacttctccggtggtgaggtcagctgccttaagttgaactttgcgagctctttgtacct 92731 Query: 116 ctccaccactccaatcatgcatatagt 142 ||| ||||| ||||||||||||||||| Sbjct: 92732 ctcgaccaccccaatcatgcatatagt 92758
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 79.8 bits (40), Expect = 2e-12 Identities = 74/87 (85%) Strand = Plus / Minus Query: 56 ctacttctccggnggcgaggtcagctgccttangntgaatttcgaaagctctttgtntnt 115 |||||||||||| || |||||||||||||||| | |||| || | |||||||||| | Sbjct: 20343535 ctacttctccggtggtgaggtcagctgccttaagttgaactttgcgagctctttgtacct 20343476 Query: 116 ctccaccactccaatcatgcatatagt 142 ||| ||||| ||||||||||||||||| Sbjct: 20343475 ctcgaccaccccaatcatgcatatagt 20343449
>dbj|AK121732.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033082H18, full insert sequence Length = 1445 Score = 79.8 bits (40), Expect = 2e-12 Identities = 74/87 (85%) Strand = Plus / Minus Query: 56 ctacttctccggnggcgaggtcagctgccttangntgaatttcgaaagctctttgtntnt 115 |||||||||||| || |||||||||||||||| | |||| || | |||||||||| | Sbjct: 1202 ctacttctccggtggtgaggtcagctgccttaagttgaactttgcgagctctttgtacct 1143 Query: 116 ctccaccactccaatcatgcatatagt 142 ||| ||||| ||||||||||||||||| Sbjct: 1142 ctcgaccaccccaatcatgcatatagt 1116
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 79.8 bits (40), Expect = 2e-12 Identities = 74/87 (85%) Strand = Plus / Minus Query: 56 ctacttctccggnggcgaggtcagctgccttangntgaatttcgaaagctctttgtntnt 115 |||||||||||| || |||||||||||||||| | |||| || | |||||||||| | Sbjct: 20653769 ctacttctccggtggtgaggtcagctgccttaagttgaactttgcgagctctttgtacct 20653710 Query: 116 ctccaccactccaatcatgcatatagt 142 ||| ||||| ||||||||||||||||| Sbjct: 20653709 ctcgaccaccccaatcatgcatatagt 20653683
>gb|BT019114.1| Zea mays clone Contig722.F mRNA sequence Length = 548 Score = 71.9 bits (36), Expect = 5e-10 Identities = 59/68 (86%) Strand = Plus / Plus Query: 72 gaggtcagctgccttangntgaatttcgaaagctctttgtntntctccaccactccaatc 131 |||||||||||||||| | |||| ||||| |||||||||| | ||||| ||||||||| Sbjct: 395 gaggtcagctgccttaggttgaacttcgagagctctttgtacctttccacaactccaatc 454 Query: 132 atgcatat 139 |||||||| Sbjct: 455 atgcatat 462
>gb|AY105168.1| Zea mays PCO065439 mRNA sequence Length = 1152 Score = 71.9 bits (36), Expect = 5e-10 Identities = 59/68 (86%) Strand = Plus / Minus Query: 72 gaggtcagctgccttangntgaatttcgaaagctctttgtntntctccaccactccaatc 131 |||||||||||||||| | |||| ||||| |||||||||| | ||||| ||||||||| Sbjct: 850 gaggtcagctgccttaggttgaacttcgagagctctttgtacctttccacaactccaatc 791 Query: 132 atgcatat 139 |||||||| Sbjct: 790 atgcatat 783
>gb|AC044787.6|AC044787 Homo sapiens chromosome 15 clone CTD-2270N23 map 15q21, complete sequence Length = 148147 Score = 40.1 bits (20), Expect = 1.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 ctccaccactccaatcatgcatat 139 ||||| |||||||||||||||||| Sbjct: 83645 ctccaacactccaatcatgcatat 83668
>gb|AC146570.6| Medicago truncatula clone mth2-103j7, complete sequence Length = 122623 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 124 ctccaatcatgcatatagt 142 ||||||||||||||||||| Sbjct: 85230 ctccaatcatgcatatagt 85248 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 488,600 Number of Sequences: 3902068 Number of extensions: 488600 Number of successful extensions: 25609 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25564 Number of HSP's gapped (non-prelim): 45 length of query: 142 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 121 effective length of database: 17,151,101,840 effective search space: 2075283322640 effective search space used: 2075283322640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
