ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags9k02 |
|---|---|
| Clone Library Name | barley_pub |
>LRC29_HUMAN (Q8WV35) Leucine-rich repeat-containing protein 29| (F-box/LRR-repeat protein 9) (F-box and leucine-rich repeat protein 9) (F-box protein FBL9) Length = 223 Score = 41.2 bits (95), Expect = 0.003 Identities = 22/63 (34%), Positives = 32/63 (50%) Frame = -3 Query: 497 PRLANLQLLACTMLQEDELKSALSFCGALEILNVHSCPQINTLDFGGLQAVCPTLKRIQS 318 PRL +L L +C+ L E L + C L +L+V +CP IN QA P + +QS Sbjct: 152 PRLQHLNLSSCSQLIEQTLDAIGQACRQLRVLDVATCPGINMAAVRRFQAQLPQVSCVQS 211 Query: 317 SLI 309 + Sbjct: 212 RFV 214 Score = 30.0 bits (66), Expect = 7.5 Identities = 17/57 (29%), Positives = 25/57 (43%) Frame = -3 Query: 500 CPRLANLQLLACTMLQEDELKSALSFCGALEILNVHSCPQINTLDFGGLQAVCPTLK 330 CP L +L L C+ L + A S L+ LN+ SC Q+ + C L+ Sbjct: 125 CPSLEHLALSHCSRLSDKGWAQAASSWPRLQHLNLSSCSQLIEQTLDAIGQACRQLR 181
>FBXL2_HUMAN (Q9UKC9) F-box/LRR-repeat protein 2 (F-box and leucine-rich repeat| protein 2) (F-box protein FBL2/FBL3) Length = 423 Score = 37.4 bits (85), Expect = 0.047 Identities = 22/67 (32%), Positives = 33/67 (49%) Frame = -3 Query: 518 EILKLDCPRLANLQLLACTMLQEDELKSALSFCGALEILNVHSCPQINTLDFGGLQAVCP 339 E L C L L L CT L+++ LK ++C L LN+ SC +I G+ +C Sbjct: 175 EALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITD---EGVVQICR 231 Query: 338 TLKRIQS 318 R+Q+ Sbjct: 232 GCHRLQA 238 Score = 33.9 bits (76), Expect = 0.52 Identities = 17/63 (26%), Positives = 28/63 (44%) Frame = -3 Query: 503 DCPRLANLQLLACTMLQEDELKSALSFCGALEILNVHSCPQINTLDFGGLQAVCPTLKRI 324 +C + +L L CT + + S FC L+ L++ SC I G+ C L+ + Sbjct: 102 NCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSSLKGISEGCRNLEYL 161 Query: 323 QSS 315 S Sbjct: 162 NLS 164 Score = 30.8 bits (68), Expect = 4.4 Identities = 19/66 (28%), Positives = 28/66 (42%) Frame = -3 Query: 512 LKLDCPRLANLQLLACTMLQEDELKSALSFCGALEILNVHSCPQINTLDFGGLQAVCPTL 333 L L+CPRL L+ C+ L + C LE +++ C I L CP L Sbjct: 255 LGLNCPRLQILEAARCSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKL 314 Query: 332 KRIQSS 315 + + S Sbjct: 315 QALSLS 320
>FBXL2_MOUSE (Q8BH16) F-box/LRR-repeat protein 2 (F-box and leucine-rich repeat| protein 2) Length = 423 Score = 36.2 bits (82), Expect = 0.10 Identities = 22/67 (32%), Positives = 32/67 (47%) Frame = -3 Query: 518 EILKLDCPRLANLQLLACTMLQEDELKSALSFCGALEILNVHSCPQINTLDFGGLQAVCP 339 E L C L L L CT L+++ LK + C L LN+ SC +I G+ +C Sbjct: 175 EALVRGCRGLKALLLRGCTQLEDEALKHIQNHCHELVSLNLQSCSRITD---DGVVQICR 231 Query: 338 TLKRIQS 318 R+Q+ Sbjct: 232 GCHRLQA 238 Score = 33.5 bits (75), Expect = 0.67 Identities = 16/63 (25%), Positives = 28/63 (44%) Frame = -3 Query: 503 DCPRLANLQLLACTMLQEDELKSALSFCGALEILNVHSCPQINTLDFGGLQAVCPTLKRI 324 +C + +L L CT + + S FC L+ L++ SC + G+ C L+ + Sbjct: 102 NCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSVTNSSLKGISEGCRNLEYL 161 Query: 323 QSS 315 S Sbjct: 162 NLS 164 Score = 31.6 bits (70), Expect = 2.6 Identities = 19/66 (28%), Positives = 28/66 (42%) Frame = -3 Query: 512 LKLDCPRLANLQLLACTMLQEDELKSALSFCGALEILNVHSCPQINTLDFGGLQAVCPTL 333 L L+CPRL L+ C+ L + C LE +++ C I L CP L Sbjct: 255 LGLNCPRLQVLEAARCSHLTDAGFTLLARNCHELEKMDLEECVLITDSTLVQLSIHCPKL 314 Query: 332 KRIQSS 315 + + S Sbjct: 315 QALSLS 320
>FXL20_MOUSE (Q9CZV8) F-box/LRR-repeat protein 20 (F-box and leucine-rich repeat| protein 20) (F-box/LRR-repeat protein 2-like) Length = 436 Score = 35.4 bits (80), Expect = 0.18 Identities = 18/63 (28%), Positives = 27/63 (42%) Frame = -3 Query: 503 DCPRLANLQLLACTMLQEDELKSALSFCGALEILNVHSCPQINTLDFGGLQAVCPTLKRI 324 +C + L L CT + S FC L L++ SC I + L CP L+++ Sbjct: 115 NCRNIEVLSLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQL 174 Query: 323 QSS 315 S Sbjct: 175 NIS 177 Score = 35.0 bits (79), Expect = 0.23 Identities = 19/59 (32%), Positives = 27/59 (45%) Frame = -3 Query: 500 CPRLANLQLLACTMLQEDELKSALSFCGALEILNVHSCPQINTLDFGGLQAVCPTLKRI 324 C +L +L L +CT + LK+ C LE LN+ C Q+ L C LK + Sbjct: 142 CSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKAL 200 Score = 33.5 bits (75), Expect = 0.67 Identities = 16/56 (28%), Positives = 27/56 (48%) Frame = -3 Query: 500 CPRLANLQLLACTMLQEDELKSALSFCGALEILNVHSCPQINTLDFGGLQAVCPTL 333 CP L L + C + +D +++ + CG L+ L + C Q+ + A CP L Sbjct: 168 CPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPEL 223 Score = 33.1 bits (74), Expect = 0.88 Identities = 18/63 (28%), Positives = 29/63 (46%) Frame = -3 Query: 503 DCPRLANLQLLACTMLQEDELKSALSFCGALEILNVHSCPQINTLDFGGLQAVCPTLKRI 324 +CPRL L++ C+ L + + C LE +++ C QI L CP L+ + Sbjct: 271 NCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVL 330 Query: 323 QSS 315 S Sbjct: 331 SLS 333
>FXL20_HUMAN (Q96IG2) F-box/LRR-repeat protein 20 (F-box and leucine-rich repeat| protein 20) (F-box/LRR-repeat protein 2-like) Length = 436 Score = 35.4 bits (80), Expect = 0.18 Identities = 18/63 (28%), Positives = 27/63 (42%) Frame = -3 Query: 503 DCPRLANLQLLACTMLQEDELKSALSFCGALEILNVHSCPQINTLDFGGLQAVCPTLKRI 324 +C + L L CT + S FC L L++ SC I + L CP L+++ Sbjct: 115 NCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQL 174 Query: 323 QSS 315 S Sbjct: 175 NIS 177 Score = 35.0 bits (79), Expect = 0.23 Identities = 19/59 (32%), Positives = 27/59 (45%) Frame = -3 Query: 500 CPRLANLQLLACTMLQEDELKSALSFCGALEILNVHSCPQINTLDFGGLQAVCPTLKRI 324 C +L +L L +CT + LK+ C LE LN+ C Q+ L C LK + Sbjct: 142 CSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKAL 200 Score = 33.5 bits (75), Expect = 0.67 Identities = 16/56 (28%), Positives = 27/56 (48%) Frame = -3 Query: 500 CPRLANLQLLACTMLQEDELKSALSFCGALEILNVHSCPQINTLDFGGLQAVCPTL 333 CP L L + C + +D +++ + CG L+ L + C Q+ + A CP L Sbjct: 168 CPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPEL 223 Score = 33.1 bits (74), Expect = 0.88 Identities = 18/63 (28%), Positives = 29/63 (46%) Frame = -3 Query: 503 DCPRLANLQLLACTMLQEDELKSALSFCGALEILNVHSCPQINTLDFGGLQAVCPTLKRI 324 +CPRL L++ C+ L + + C LE +++ C QI L CP L+ + Sbjct: 271 NCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVL 330 Query: 323 QSS 315 S Sbjct: 331 SLS 333
>FXL20_RAT (Q9QZH7) F-box/LRR-repeat protein 20 (F-box and leucine-rich repeat| protein 20) (F-box/LRR-repeat protein 2-like) Length = 276 Score = 35.4 bits (80), Expect = 0.18 Identities = 18/63 (28%), Positives = 27/63 (42%) Frame = -3 Query: 503 DCPRLANLQLLACTMLQEDELKSALSFCGALEILNVHSCPQINTLDFGGLQAVCPTLKRI 324 +C + L L CT + S FC L L++ SC I + L CP L+++ Sbjct: 115 NCRNIEVLSLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQL 174 Query: 323 QSS 315 S Sbjct: 175 NIS 177 Score = 35.0 bits (79), Expect = 0.23 Identities = 19/59 (32%), Positives = 27/59 (45%) Frame = -3 Query: 500 CPRLANLQLLACTMLQEDELKSALSFCGALEILNVHSCPQINTLDFGGLQAVCPTLKRI 324 C +L +L L +CT + LK+ C LE LN+ C Q+ L C LK + Sbjct: 142 CSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKAL 200 Score = 33.5 bits (75), Expect = 0.67 Identities = 16/56 (28%), Positives = 27/56 (48%) Frame = -3 Query: 500 CPRLANLQLLACTMLQEDELKSALSFCGALEILNVHSCPQINTLDFGGLQAVCPTL 333 CP L L + C + +D +++ + CG L+ L + C Q+ + A CP L Sbjct: 168 CPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPEL 223
>FXL13_MOUSE (Q8CDU4) F-box/LRR-repeat protein 13 (F-box and leucine-rich repeat| protein 13) Length = 790 Score = 33.5 bits (75), Expect = 0.67 Identities = 16/50 (32%), Positives = 25/50 (50%) Frame = -3 Query: 491 LANLQLLACTMLQEDELKSALSFCGALEILNVHSCPQINTLDFGGLQAVC 342 L +L + C+ L +D +K+ FC + LN+ CP+I L A C Sbjct: 633 LEHLDVSYCSQLTDDIIKTIAIFCTRITSLNIAGCPKITDAGMEILSARC 682
>FBX37_MOUSE (Q91W61) F-box only protein 37 (F-box/LRR-repeat protein 15)| Length = 296 Score = 33.5 bits (75), Expect = 0.67 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = -3 Query: 512 LKLDCPRLANLQLLACTMLQEDELKSALSFCGALEILNVHSCPQI 378 L +CP+L +L L C + D +++ +C AL L V C + Sbjct: 210 LARNCPQLEHLDLTGCLRVGSDGVRTLAEYCPALRSLRVRHCHHV 254 Score = 30.4 bits (67), Expect = 5.7 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = -3 Query: 500 CPRLANLQLLACTMLQEDELKSALSFCGALEILNVHSCPQI 378 CPRL L L C + L+ C ALE L++ +C Q+ Sbjct: 135 CPRLQRLSLAHCDWVDGLALRGLADRCPALEELDLTACRQL 175
>FBXL4_HUMAN (Q9UKA2) F-box/LRR-repeat protein 4 (F-box and leucine-rich repeat| protein 4) (F-box protein FBL4/FBL5) Length = 621 Score = 32.3 bits (72), Expect = 1.5 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = -3 Query: 512 LKLDCPRLANLQLLACTMLQEDELKSALSFCGALEILNVHSCPQIN 375 L +C RL L +L M+ L+ L C L +L+V C QI+ Sbjct: 554 LACNCTRLQQLDILGTRMVSPASLRKLLESCKDLSLLDVSFCSQID 599
>RNB_PASMU (Q9CP74) Exoribonuclease 2 (EC 3.1.13.1) (Exoribonuclease II)| (Ribonuclease II) (RNase II) Length = 658 Score = 32.0 bits (71), Expect = 2.0 Identities = 18/44 (40%), Positives = 24/44 (54%) Frame = +3 Query: 57 ASTIPIRRLFIHINTDLLTPSLHLGSKYKLGSAVSIFQLDSAQE 188 AS I + I +NTD LT S+ KYKLG + + LD +E Sbjct: 606 ASLIHDNKEAIQVNTDTLTLSIQGEVKYKLGDIIQVQLLDVKEE 649
>FBX37_HUMAN (Q9H469) F-box only protein 37 (F-box/LRR-repeat protein 15)| Length = 296 Score = 31.2 bits (69), Expect = 3.3 Identities = 13/45 (28%), Positives = 21/45 (46%) Frame = -3 Query: 512 LKLDCPRLANLQLLACTMLQEDELKSALSFCGALEILNVHSCPQI 378 L +CP L +L L C + D +++ +C L L V C + Sbjct: 210 LARNCPELHHLDLTGCLRVGSDGVRTLAEYCPVLRSLRVRHCHHV 254 Score = 30.4 bits (67), Expect = 5.7 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = -3 Query: 500 CPRLANLQLLACTMLQEDELKSALSFCGALEILNVHSCPQI 378 CPRL L L C + L+ C ALE L++ +C Q+ Sbjct: 135 CPRLQRLSLAHCDWVDGLALRGLADRCPALEELDLTACRQL 175
>SYV_SYMTH (Q67SJ2) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 911 Score = 30.4 bits (67), Expect = 5.7 Identities = 17/59 (28%), Positives = 29/59 (49%) Frame = +3 Query: 231 CCIRTKSMTMAFLFQIWTIYSSPLLCDEAALNALESWANSL*PAKIQRVYLWTRVHIED 407 CC R ++ + + W + PL E A+ A+ES + P + +VYL +I+D Sbjct: 353 CCARCGTVIEPLISRQWYVKMKPLA--EPAIRAVESGQIKIVPERFTKVYLHWMENIQD 409
>GIDA_MYCH2 (Q602E7) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 619 Score = 30.4 bits (67), Expect = 5.7 Identities = 20/69 (28%), Positives = 33/69 (47%) Frame = +3 Query: 3 ESGIIXTNLVLLSSMKYAASTIPIRRLFIHINTDLLTPSLHLGSKYKLGSAVSIFQLDSA 182 +SG+I L KYA I R + ++ + ++P L KY L +S +L S Sbjct: 458 KSGLISKKEYLKIKAKYAK----IDRKILELSKEFVSPKDELAKKYNLEKRISKLKLISW 513 Query: 183 QEINWKNRL 209 +N+K+ L Sbjct: 514 PNVNFKDIL 522
>FBXL7_HUMAN (Q9UJT9) F-box/LRR-repeat protein 7 (F-box and leucine-rich repeat| protein 7) (F-box protein FBL6/FBL7) Length = 491 Score = 30.4 bits (67), Expect = 5.7 Identities = 12/44 (27%), Positives = 22/44 (50%) Frame = -3 Query: 500 CPRLANLQLLACTMLQEDELKSALSFCGALEILNVHSCPQINTL 369 CP L L++ C + + + +S C LE L+V C ++ + Sbjct: 211 CPELRRLEVSGCYNISNEAVFDVVSLCPNLEHLDVSGCSKVTCI 254 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,067,828 Number of Sequences: 219361 Number of extensions: 1992640 Number of successful extensions: 4371 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4230 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4369 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7366267610 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
