ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9k02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT018755.1| Zea mays clone EL01N0523E09.d mRNA sequence 190 4e-45
2dbj|AK072011.1| Oryza sativa (japonica cultivar-group) cDNA clon... 182 1e-42
3dbj|AK070796.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 3e-40
4gb|BT018349.1| Zea mays clone EL01T0403E10.c mRNA sequence 141 4e-30
5ref|NM_196336.1| Oryza sativa (japonica cultivar-group) putative... 80 1e-11
6gb|AC122144.1| Oryza sativa (japonica cultivar-group) chromosome... 80 1e-11
7gb|AC108884.1| Oryza sativa (japonica cultivar-group) cultivar N... 80 1e-11
8dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 80 1e-11
9gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 80 1e-11
10gb|AC116412.19| Mus musculus chromosome 5, clone RP24-82A20, com... 42 2.5
11gb|BC024318.1| Homo sapiens PAN3 polyA specific ribonuclease sub... 42 2.5
12gb|AC006348.3| Homo sapiens PAC clone RP5-876K2 from 7, complete... 42 2.5
13emb|BX647740.1|HSM807886 Homo sapiens mRNA; cDNA DKFZp686K19283 ... 42 2.5
14ref|NM_175854.5| Homo sapiens PAN3 polyA specific ribonuclease s... 42 2.5
15emb|AL773543.3| Human DNA sequence from clone DAQB-187P15 on chr... 42 2.5
16emb|AL138712.19| Human DNA sequence from clone RP11-502P18 on ch... 42 2.5
17dbj|AK091307.1| Homo sapiens cDNA FLJ33988 fis, clone DFNES20063... 42 2.5
18gb|AC079856.7| Homo sapiens BAC clone RP11-521B4 from 4, complet... 42 2.5
19emb|BX927168.11| Human DNA sequence from clone DAMA-367I24 on ch... 42 2.5
20emb|CR376859.9| Zebrafish DNA sequence from clone CH211-197D4 in... 42 2.5
21ref|NM_106247.2| Arabidopsis thaliana unknown protein AT1G75980 ... 40 9.9
22gb|BC078333.1| Danio rerio SRY-box containing gene 10, mRNA (cDN... 40 9.9
23gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Ph... 40 9.9
24gb|AC115013.18| Mus musculus chromosome 10, clone RP24-193P19, c... 40 9.9
25gb|AC146027.2| Pan troglodytes BAC clone RP43-120L21 from 7, com... 40 9.9
26ref|NM_131875.1| Danio rerio SRY-box containing gene 10 (sox10),... 40 9.9
27gb|AC079276.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 9.9
28gb|AC004884.1| Homo sapiens PAC clone RP4-778K6 from 7, complete... 40 9.9
29ref|XM_803203.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 9.9
30ref|XM_809478.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 9.9
31gb|AC127278.4| Mus musculus BAC clone RP24-224D24 from chromosom... 40 9.9
32gb|AC127301.3| Mus musculus BAC clone RP23-269N6 from 18, comple... 40 9.9
33gb|AC099413.3| Mus musculus BAC clone RP23-2O10 from 4, complete... 40 9.9
34gb|AC117189.3| Mus musculus BAC clone RP23-44D2 from 8, complete... 40 9.9
35emb|BX284668.4| Human DNA sequence from clone RP11-108M9 on chro... 40 9.9
36gb|AC008009.5| Homo sapiens 3 BAC RP11-436A20 (Roswell Park Canc... 40 9.9
37emb|AL021920.1|HS163M9 Human DNA sequence from clone RP1-163M9 o... 40 9.9
38ref|XM_786002.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 9.9
39emb|CR628336.1| Legionella pneumophila str. Paris complete genome 40 9.9
40gb|AC104849.2| Homo sapiens chromosome 3 clone RP11-154D3, compl... 40 9.9
41gb|AF480912.1| Legionella pneumophila clone pA37F putative lipop... 40 9.9
42emb|BX005425.12| Zebrafish DNA sequence from clone DKEY-7O6 in l... 40 9.9
43gb|AC010715.6| Drosophila melanogaster 3L BAC RP98-9G21 (Roswell... 40 9.9
44gb|AC105939.2| Homo sapiens chromosome 3 clone RP11-241A5, compl... 40 9.9
45gb|DP000063.1| Oryctolagus cuniculus target 117 genomic scaffold 40 9.9
46dbj|AK145723.1| Mus musculus blastocyst blastocyst cDNA, RIKEN f... 40 9.9
47gb|AF402677.1|AF402677 Danio rerio HMG-box transcription factor ... 40 9.9
48gb|AY036106.1| Chlamydomonas reinhardtii hydroxyproline-rich gly... 40 9.9
49dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.9
50gb|AC007396.6|AC007396 Genomic sequence for Arabidopsis thaliana... 40 9.9
51dbj|AP005091.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.9
52dbj|AP005704.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.9
53gb|AC157472.3| Medicago truncatula chromosome 7 BAC clone mth2-4... 40 9.9
54emb|AL133444.4|CNS01DV0 Human chromosome 14 DNA sequence BAC R-7... 40 9.9
55gb|AE003563.4| Drosophila melanogaster chromosome 3L, section 22... 40 9.9
56gb|AC004767.1|AC004767 Drosophila melanogaster DNA sequence (P1s... 40 9.9
57gb|AC005492.1|AC005492 Homo sapiens clone UWGC:g1564a021 from 7p... 40 9.9
58gb|AC147596.5| Gallus gallus BAC clone CH261-29A2 from chromosom... 40 9.9
59gb|U84749.1|DMU84749 Drosophila melanogaster cuticle protein LCP... 40 9.9
60gb|DQ272236.1| Homo sapiens G protein-coupled receptor 154 (GPR1... 40 9.9
61emb|AL772320.12| Mouse DNA sequence from clone RP23-346F2 on chr... 40 9.9

>gb|BT018755.1| Zea mays clone EL01N0523E09.d mRNA sequence
          Length = 2199

 Score =  190 bits (96), Expect = 4e-45
 Identities = 260/312 (83%), Gaps = 2/312 (0%)
 Strand = Plus / Minus

                                                                        
Query: 384  tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 443
            ||||||||| |||||||| |||| |||||| ||||  |||| ||||| ||||||||  | 
Sbjct: 1755 tggacaagaatgcacattaaggacctccaacgcacaacaaagggatattgcagattctaa 1696

                                                                        
Query: 444  ttcatcctcttgcaacattgtgcatgccaaaagttggaggttagccaatcttgggcaatc 503
            ||| |||||||||||||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct: 1695 ttcctcctcttgcaacatggtgcatgccaaaagttggaggttggtcaatcttgggcaatc 1636

                                                                        
Query: 504  aagcttcagaatctccagtgagttacaattactcaaatttaaattgtaaagattgtagca 563
            ||||||||| | |||||||||| ||||||| ||||| |||||  |  |||||||| ||||
Sbjct: 1635 aagcttcagcacctccagtgagctacaattgctcaagtttaacgttaaaagattggagca 1576

                                                                        
Query: 564  cttcaaatctacttcctttcaagtttgcagacaaattaaggttgatcttagacaaattca 623
              ||||||| |||||| |||||||| |  || | |||||| || || || |||||||   
Sbjct: 1575 tgtcaaatccacttcc-ttcaagttggttgaaagattaagattaattttggacaaatgtg 1517

                                                                        
Query: 624  gatagttggccgttgaaggaataacaactttcttaatatttggacaaccaggtacagttg 683
             | |||| ||  | |||||||||||||||||||||||||| || || ||| ||||| |||
Sbjct: 1516 aaaagtttgctatcgaaggaataacaactttcttaatattagggcaccca-gtacaattg 1458

                        
Query: 684  agaacttcaagc 695
            ||||||||||||
Sbjct: 1457 agaacttcaagc 1446



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>dbj|AK072011.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102A05, full
            insert sequence
          Length = 1911

 Score =  182 bits (92), Expect = 1e-42
 Identities = 259/312 (83%), Gaps = 2/312 (0%)
 Strand = Plus / Minus

                                                                        
Query: 384  tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 443
            ||||||||||||||||||||| ||||||||||||| |||    |||| ||||||||  ||
Sbjct: 1442 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 1383

                                                                        
Query: 444  ttcatcctcttgcaacattgtgcatgccaaaagttggaggttagccaatcttgggcaatc 503
            ||| || ||||||||||| |||||||||| ||||||||| || | || ||||||||||||
Sbjct: 1382 ttcctcatcttgcaacatggtgcatgccagaagttggagatttgtcagtcttgggcaatc 1323

                                                                        
Query: 504  aagcttcagaatctccagtgagttacaattactcaaatttaaattgtaaagattgtagca 563
            ||||||||||| |||||| ||| ||||||| ||||  || ||| | ||||||||| ||||
Sbjct: 1322 aagcttcagaacctccagggagctacaattgctcaggttcaaagtataaagattggagca 1263

                                                                        
Query: 564  cttcaaatctacttcctttcaagtttgcagacaaattaaggttgatcttagacaaattca 623
              ||||||| ||||||||| || ||||  |||| |||||| ||||| |||||||     |
Sbjct: 1262 tgtcaaatccacttccttt-aaatttgtggacagattaagattgattttagacaggcgta 1204

                                                                        
Query: 624  gatagttggccgttgaaggaataacaactttcttaatatttggacaaccaggtacagttg 683
            ||||| | | | ||||||| || |  |||||||||||||||||||||||| ||||| || 
Sbjct: 1203 gataggttgtcattgaagggatgatgactttcttaatatttggacaacca-gtacaattc 1145

                        
Query: 684  agaacttcaagc 695
            ||||||||||||
Sbjct: 1144 agaacttcaagc 1133



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>dbj|AK070796.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023067J12, full
            insert sequence
          Length = 2385

 Score =  174 bits (88), Expect = 3e-40
 Identities = 258/312 (82%), Gaps = 2/312 (0%)
 Strand = Plus / Minus

                                                                        
Query: 384  tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 443
            ||||||||||||||||||||| ||||||||||||| |||    |||| ||||||||  ||
Sbjct: 1884 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 1825

                                                                        
Query: 444  ttcatcctcttgcaacattgtgcatgccaaaagttggaggttagccaatcttgggcaatc 503
            ||| || ||| ||||||| |||||||||| ||||||||| || | || ||||||||||||
Sbjct: 1824 ttcctcatctcgcaacatggtgcatgccagaagttggagatttgtcagtcttgggcaatc 1765

                                                                        
Query: 504  aagcttcagaatctccagtgagttacaattactcaaatttaaattgtaaagattgtagca 563
            ||||||||||| |||||| ||| ||||||| ||||  || ||| | ||||||||| ||||
Sbjct: 1764 aagcttcagaacctccagggagctacaattgctcaggttcaaagtataaagattggagca 1705

                                                                        
Query: 564  cttcaaatctacttcctttcaagtttgcagacaaattaaggttgatcttagacaaattca 623
              ||||||| ||||||||| || ||||  |||| |||||| ||||| |||||||     |
Sbjct: 1704 tgtcaaatccacttccttt-aaatttgtggacagattaagattgattttagacaggcgta 1646

                                                                        
Query: 624  gatagttggccgttgaaggaataacaactttcttaatatttggacaaccaggtacagttg 683
            ||||| | | | ||||||| || |  |||||||||||||||||||||||| ||||| || 
Sbjct: 1645 gataggttgtcattgaagggatgatgactttcttaatatttggacaacca-gtacaattc 1587

                        
Query: 684  agaacttcaagc 695
            ||||||||||||
Sbjct: 1586 agaacttcaagc 1575



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>gb|BT018349.1| Zea mays clone EL01T0403E10.c mRNA sequence
          Length = 1020

 Score =  141 bits (71), Expect = 4e-30
 Identities = 253/311 (81%), Gaps = 2/311 (0%)
 Strand = Plus / Minus

                                                                       
Query: 384 tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 443
           ||||||||| |||||||| |||| |||||| ||||  |||| ||||| ||||||||  | 
Sbjct: 400 tggacaagaatgcacattaaggaactccaacgcactacaaagggatattgcagattctaa 341

                                                                       
Query: 444 ttcatcctcttgcaacattgtgcatgccaaaagttggaggttagccaatcttgggcaatc 503
           ||| ||||||||||||||  ||||||||| ||| ||||| || | |||||||||||||||
Sbjct: 340 ttcctcctcttgcaacatgatgcatgccagaagctggagattggacaatcttgggcaatc 281

                                                                       
Query: 504 aagcttcagaatctccagtgagttacaattactcaaatttaaattgtaaagattgtagca 563
           ||||||||| | |||||||||| |||| || ||||| |||||  |  ||||||||   ||
Sbjct: 280 aagcttcagcacctccagtgagctacagttgctcaagtttaacgttaaaagattgggaca 221

                                                                       
Query: 564 cttcaaatctacttcctttcaagtttgcagacaaattaaggttgatcttagacaaattca 623
             ||||||| |||||| |||||||| |  || | |||||| || || || | |||||  |
Sbjct: 220 tgtcaaatccacttcc-ttcaagttggtcgaaagattaagattaattttggccaaatgta 162

                                                                       
Query: 624 gatagttggccgttgaaggaataacaactttcttaatatttggacaaccaggtacagttg 683
           || |||| ||  |||||||||||||||||||||| ||||| || || ||| ||||| |||
Sbjct: 161 gaaagttcgctattgaaggaataacaactttcttgatattagggcaccca-gtacaattg 103

                      
Query: 684 agaacttcaag 694
           |||||||||||
Sbjct: 102 agaacttcaag 92



 Score = 44.1 bits (22), Expect = 0.63
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 304 tatgcgatgaggctgctctgaatgcgcttgagagttgggcaa 345
           |||| ||||||||||||||| |||||||| ||| | ||||||
Sbjct: 480 tatgagatgaggctgctctggatgcgcttcagactggggcaa 439



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>ref|NM_196336.1| Oryza sativa (japonica cultivar-group) putative F-box protein family
            (OSJNAa0011L09.13), mRNA
          Length = 3459

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 76/88 (86%)
 Strand = Plus / Minus

                                                                        
Query: 384  tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 443
            ||||||||||||||||||||| ||||||||||||| |||    |||| ||||||||  ||
Sbjct: 2757 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 2698

                                        
Query: 444  ttcatcctcttgcaacattgtgcatgcc 471
            ||| || ||||||||||| |||||||||
Sbjct: 2697 ttcctcatcttgcaacatggtgcatgcc 2670



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>gb|AC122144.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAa0011L09, complete sequence
          Length = 121055

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 76/88 (86%)
 Strand = Plus / Plus

                                                                         
Query: 384   tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 443
             ||||||||||||||||||||| ||||||||||||| |||    |||| ||||||||  ||
Sbjct: 76107 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 76166

                                         
Query: 444   ttcatcctcttgcaacattgtgcatgcc 471
             ||| || ||||||||||| |||||||||
Sbjct: 76167 ttcctcatcttgcaacatggtgcatgcc 76194



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                         
Query: 474   aagttggaggttagccaatcttgggcaatcaagcttcagaatctccagtgagttacaatt 533
             ||||||||| || | || ||||||||||||||||||||||| |||||| ||| |||||||
Sbjct: 77343 aagttggagatttgtcagtcttgggcaatcaagcttcagaacctccagggagctacaatt 77402



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 43/46 (93%), Gaps = 1/46 (2%)
 Strand = Plus / Plus

                                                           
Query: 650   actttcttaatatttggacaaccaggtacagttgagaacttcaagc 695
             |||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct: 77600 actttcttaatatttggacaacca-gtacaattcagaacttcaagc 77644



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>gb|AC108884.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone
              OSJNBb0058B20 from chromosome 10, complete sequence
          Length = 156232

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 76/88 (86%)
 Strand = Plus / Minus

                                                                          
Query: 384    tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 443
              ||||||||||||||||||||| ||||||||||||| |||    |||| ||||||||  ||
Sbjct: 141181 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 141122

                                          
Query: 444    ttcatcctcttgcaacattgtgcatgcc 471
              ||| || ||||||||||| |||||||||
Sbjct: 141121 ttcctcatcttgcaacatggtgcatgcc 141094



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                          
Query: 474    aagttggaggttagccaatcttgggcaatcaagcttcagaatctccagtgagttacaatt 533
              ||||||||| || | || ||||||||||||||||||||||| |||||| ||| |||||||
Sbjct: 139945 aagttggagatttgtcagtcttgggcaatcaagcttcagaacctccagggagctacaatt 139886



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 43/46 (93%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                            
Query: 650    actttcttaatatttggacaaccaggtacagttgagaacttcaagc 695
              |||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct: 139688 actttcttaatatttggacaacca-gtacaattcagaacttcaagc 139644



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 76/88 (86%)
 Strand = Plus / Plus

                                                                            
Query: 384      tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 443
                ||||||||||||||||||||| ||||||||||||| |||    |||| ||||||||  ||
Sbjct: 12779668 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 12779727

                                            
Query: 444      ttcatcctcttgcaacattgtgcatgcc 471
                ||| || ||||||||||| |||||||||
Sbjct: 12779728 ttcctcatcttgcaacatggtgcatgcc 12779755



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                            
Query: 474      aagttggaggttagccaatcttgggcaatcaagcttcagaatctccagtgagttacaatt 533
                ||||||||| || | || ||||||||||||||||||||||| |||||| ||| |||||||
Sbjct: 12780904 aagttggagatttgtcagtcttgggcaatcaagcttcagaacctccagggagctacaatt 12780963



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 43/46 (93%), Gaps = 1/46 (2%)
 Strand = Plus / Plus

                                                              
Query: 650      actttcttaatatttggacaaccaggtacagttgagaacttcaagc 695
                |||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct: 12781161 actttcttaatatttggacaacca-gtacaattcagaacttcaagc 12781205



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 76/88 (86%)
 Strand = Plus / Plus

                                                                            
Query: 384      tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 443
                ||||||||||||||||||||| ||||||||||||| |||    |||| ||||||||  ||
Sbjct: 12787009 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 12787068

                                            
Query: 444      ttcatcctcttgcaacattgtgcatgcc 471
                ||| || ||||||||||| |||||||||
Sbjct: 12787069 ttcctcatcttgcaacatggtgcatgcc 12787096



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                            
Query: 474      aagttggaggttagccaatcttgggcaatcaagcttcagaatctccagtgagttacaatt 533
                ||||||||| || | || ||||||||||||||||||||||| |||||| ||| |||||||
Sbjct: 12788245 aagttggagatttgtcagtcttgggcaatcaagcttcagaacctccagggagctacaatt 12788304



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 43/46 (93%), Gaps = 1/46 (2%)
 Strand = Plus / Plus

                                                              
Query: 650      actttcttaatatttggacaaccaggtacagttgagaacttcaagc 695
                |||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct: 12788502 actttcttaatatttggacaacca-gtacaattcagaacttcaagc 12788546



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>gb|AC116412.19| Mus musculus chromosome 5, clone RP24-82A20, complete sequence
          Length = 191823

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 182    acaagaaatcaattggaaaaa 202
              |||||||||||||||||||||
Sbjct: 163256 acaagaaatcaattggaaaaa 163236



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>gb|BC024318.1| Homo sapiens PAN3 polyA specific ribonuclease subunit homolog (S.
            cerevisiae), mRNA (cDNA clone IMAGE:3915414)
          Length = 4152

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 649  aactttcttaatatttggaca 669
            |||||||||||||||||||||
Sbjct: 2508 aactttcttaatatttggaca 2528



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>gb|AC006348.3| Homo sapiens PAC clone RP5-876K2 from 7, complete sequence
          Length = 135883

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 182    acaagaaatcaattggaaaaa 202
              |||||||||||||||||||||
Sbjct: 117289 acaagaaatcaattggaaaaa 117309



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>emb|BX647740.1|HSM807886 Homo sapiens mRNA; cDNA DKFZp686K19283 (from clone DKFZp686K19283)
          Length = 3532

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 649  aactttcttaatatttggaca 669
            |||||||||||||||||||||
Sbjct: 1887 aactttcttaatatttggaca 1907



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>ref|NM_175854.5| Homo sapiens PAN3 polyA specific ribonuclease subunit homolog (S.
            cerevisiae) (PAN3), mRNA
          Length = 4877

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 649  aactttcttaatatttggaca 669
            |||||||||||||||||||||
Sbjct: 3247 aactttcttaatatttggaca 3267



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>emb|AL773543.3| Human DNA sequence from clone DAQB-187P15 on chromosome 6 Contains the
             MTCO3P1 pseudogene for cytochrome c oxidase III, the
             HLA-DQB3 pseudogene for major histocompatibility complex,
             class II, DQ beta 3, the HLA-DQA2 gene for major
             histocompatibility complex, class II, DQ alpha 2, the
             HLA-DQB2 gene for major histocompatibility complex, class
             II, DQ beta 2 and one CpG island, complete sequence
          Length = 117303

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 259   tggcttttttgtttcaaatct 279
             |||||||||||||||||||||
Sbjct: 66812 tggcttttttgtttcaaatct 66832



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>emb|AL138712.19| Human DNA sequence from clone RP11-502P18 on chromosome 13 Contains 3'
             end of novel gene similar to Drosophila CG11486,  and the
             3' end of the FLT1 gene for fms-related tyrosine kinase 1
             (vascular endothelial growth factor/vascular permeability
             factor receptor), complete sequence
          Length = 164519

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 649   aactttcttaatatttggaca 669
             |||||||||||||||||||||
Sbjct: 61418 aactttcttaatatttggaca 61438



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>dbj|AK091307.1| Homo sapiens cDNA FLJ33988 fis, clone DFNES2006346, weakly similar to
            PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3
            (EC 3.1.13.4)
          Length = 3208

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 649  aactttcttaatatttggaca 669
            |||||||||||||||||||||
Sbjct: 1581 aactttcttaatatttggaca 1601



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>gb|AC079856.7| Homo sapiens BAC clone RP11-521B4 from 4, complete sequence
          Length = 155340

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 533   tactcaaatttaaattgtaaagatt 557
             ||||||||| |||||||||||||||
Sbjct: 85341 tactcaaatataaattgtaaagatt 85365



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>emb|BX927168.11| Human DNA sequence from clone DAMA-367I24 on chromosome 6, complete
              sequence
          Length = 109326

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 259    tggcttttttgtttcaaatct 279
              |||||||||||||||||||||
Sbjct: 106780 tggcttttttgtttcaaatct 106800



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>emb|CR376859.9| Zebrafish DNA sequence from clone CH211-197D4 in linkage group 10,
             complete sequence
          Length = 58467

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 529   caattactcaaatttaaattgtaaa 553
             ||||||| |||||||||||||||||
Sbjct: 25568 caattacacaaatttaaattgtaaa 25544



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>ref|NM_106247.2| Arabidopsis thaliana unknown protein AT1G75980 mRNA, complete cds
          Length = 1060

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 501 atcaagcttcagaatctcca 520
           ||||||||||||||||||||
Sbjct: 21  atcaagcttcagaatctcca 2



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>gb|BC078333.1| Danio rerio SRY-box containing gene 10, mRNA (cDNA clone
            IMAGE:7168235), complete cds
          Length = 2255

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 81   ttattcattcatataaatacagat 104
            ||||||||||||| ||||||||||
Sbjct: 1240 ttattcattcatacaaatacagat 1217



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>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
               genome
          Length = 3397754

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 257     aatggcttttttgtttcaaa 276
               ||||||||||||||||||||
Sbjct: 1131070 aatggcttttttgtttcaaa 1131051



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>gb|AC115013.18| Mus musculus chromosome 10, clone RP24-193P19, complete sequence
          Length = 183402

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    ttattcattcatataaatac 100
             ||||||||||||||||||||
Sbjct: 77537 ttattcattcatataaatac 77518



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>gb|AC146027.2| Pan troglodytes BAC clone RP43-120L21 from 7, complete sequence
          Length = 182348

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 538    aaatttaaattgtaaagatt 557
              ||||||||||||||||||||
Sbjct: 167235 aaatttaaattgtaaagatt 167254



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>ref|NM_131875.1| Danio rerio SRY-box containing gene 10 (sox10), mRNA
          Length = 3231

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 81   ttattcattcatataaatacagat 104
            ||||||||||||| ||||||||||
Sbjct: 2223 ttattcattcatacaaatacagat 2200



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>gb|AC079276.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-446B13, complete
              sequence
          Length = 205177

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 437    atttcagttcatcctcttgc 456
              ||||||||||||||||||||
Sbjct: 133427 atttcagttcatcctcttgc 133446



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>gb|AC004884.1| Homo sapiens PAC clone RP4-778K6 from 7, complete sequence
          Length = 138244

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 534  actcaaatttaaattgtaaa 553
            ||||||||||||||||||||
Sbjct: 6867 actcaaatttaaattgtaaa 6886



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>ref|XM_803203.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053510397.10) partial mRNA
          Length = 579

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 254 gacaatggcttttttgtttc 273
           ||||||||||||||||||||
Sbjct: 304 gacaatggcttttttgtttc 323



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>ref|XM_809478.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053510609.20) partial mRNA
          Length = 579

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 254 gacaatggcttttttgtttc 273
           ||||||||||||||||||||
Sbjct: 304 gacaatggcttttttgtttc 323



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>gb|AC127278.4| Mus musculus BAC clone RP24-224D24 from chromosome 18, complete sequence
          Length = 149172

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 506    gcttcagaatctccagtgag 525
              ||||||||||||||||||||
Sbjct: 111504 gcttcagaatctccagtgag 111523



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>gb|AC127301.3| Mus musculus BAC clone RP23-269N6 from 18, complete sequence
          Length = 166565

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 506    gcttcagaatctccagtgag 525
              ||||||||||||||||||||
Sbjct: 163199 gcttcagaatctccagtgag 163180



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>gb|AC099413.3| Mus musculus BAC clone RP23-2O10 from 4, complete sequence
          Length = 208798

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 376    tttatttgtggacaagagtg 395
              ||||||||||||||||||||
Sbjct: 207754 tttatttgtggacaagagtg 207735



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>gb|AC117189.3| Mus musculus BAC clone RP23-44D2 from 8, complete sequence
          Length = 165254

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 505   agcttcagaatctccagtga 524
             ||||||||||||||||||||
Sbjct: 66147 agcttcagaatctccagtga 66166



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>emb|BX284668.4| Human DNA sequence from clone RP11-108M9 on chromosome 1 Contains four
             novel genes, a novel pseudogene, the 5' end of the CROCC
             gene for ciliary rootlet coiled-coil rootletin (KIAA0445)
             and two CpG islands, complete sequence
          Length = 93826

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   attcagcacaagaaatcaat 194
             ||||||||||||||||||||
Sbjct: 15037 attcagcacaagaaatcaat 15018



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>gb|AC008009.5| Homo sapiens 3 BAC RP11-436A20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 212349

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 84     ttcattcatataaatacaga 103
              ||||||||||||||||||||
Sbjct: 117673 ttcattcatataaatacaga 117654



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>emb|AL021920.1|HS163M9 Human DNA sequence from clone RP1-163M9 on chromosome 1p35.1-36.21
             Contains a novel pseudogene, a eukaryotic translation
             initiation factor 1A pseudogene 1 (EIF1AP1), part of a
             novel gene (LOC284729), a macrophage stimulating 1
             (hepatocyte growth factor-like)(MST1) pseudogene and five
             CpG islands, complete sequence
          Length = 118067

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   attcagcacaagaaatcaat 194
             ||||||||||||||||||||
Sbjct: 48460 attcagcacaagaaatcaat 48441



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>ref|XM_786002.1| PREDICTED: Strongylocentrotus purpuratus similar to Ubiquitin ligase
            protein MIB2 (Mind bomb homolog 2)
            (RBSC-skeletrophin/dystrophin-like polypeptide)
            (LOC586211), mRNA
          Length = 2664

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 564  cttcaaatctacttcctttc 583
            ||||||||||||||||||||
Sbjct: 1572 cttcaaatctacttcctttc 1553



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>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 257     aatggcttttttgtttcaaa 276
               ||||||||||||||||||||
Sbjct: 2691148 aatggcttttttgtttcaaa 2691167



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>gb|AC104849.2| Homo sapiens chromosome 3 clone RP11-154D3, complete sequence
          Length = 165849

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 263    ttttttgtttcaaatctgga 282
              ||||||||||||||||||||
Sbjct: 103467 ttttttgtttcaaatctgga 103448



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>gb|AF480912.1| Legionella pneumophila clone pA37F putative lipoprotein (plpA),
            putative copper efflux ATPase (copA2), chemiosmotic
            efflux system C protein A (cecA), chemiosmotic efflux
            system C protein B (cecB), chemiosmotic efflux system C
            protein C (cecC), putative copper efflux ATPase (copA1),
            chemiosmotic efflux system B protein A (cebA),
            chemiosmotic efflux system B protein B (cebB),
            chemiosmotic efflux system B protein C (cebC), putative
            cation efflux transporter (ctpA), putative cadmium efflux
            ATPase (cadA1), and cadA2 genes, complete cds; and
            unknown genes
          Length = 38800

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 257  aatggcttttttgtttcaaa 276
            ||||||||||||||||||||
Sbjct: 8184 aatggcttttttgtttcaaa 8203



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>emb|BX005425.12| Zebrafish DNA sequence from clone DKEY-7O6 in linkage group 8, complete
              sequence
          Length = 252440

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 531    attactcaaatttaaattgtaaag 554
              |||| |||||||||||||||||||
Sbjct: 116531 attaatcaaatttaaattgtaaag 116508



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>gb|AC010715.6| Drosophila melanogaster 3L BAC RP98-9G21 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 174551

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   agaaatcaattggaaaaaca 204
             ||||||||||||||||||||
Sbjct: 73633 agaaatcaattggaaaaaca 73652



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>gb|AC105939.2| Homo sapiens chromosome 3 clone RP11-241A5, complete sequence
          Length = 97387

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 263   ttttttgtttcaaatctgga 282
             ||||||||||||||||||||
Sbjct: 15709 ttttttgtttcaaatctgga 15690



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>gb|DP000063.1| Oryctolagus cuniculus target 117 genomic scaffold
          Length = 489372

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 257   aatggcttttttgtttcaaa 276
             ||||||||||||||||||||
Sbjct: 25788 aatggcttttttgtttcaaa 25807



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>dbj|AK145723.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched
            library, clone:I1C0033L07 product:transportin 3, full
            insert sequence
          Length = 2616

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 437  atttcagttcatcctcttgc 456
            ||||||||||||||||||||
Sbjct: 2440 atttcagttcatcctcttgc 2421



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>gb|AF402677.1|AF402677 Danio rerio HMG-box transcription factor Sox10 (sox10) mRNA, complete
            cds
          Length = 3231

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 81   ttattcattcatataaatacagat 104
            ||||||||||||| ||||||||||
Sbjct: 2223 ttattcattcatacaaatacagat 2200



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>gb|AY036106.1| Chlamydomonas reinhardtii hydroxyproline-rich glycoprotein VSP4 mRNA,
            complete cds
          Length = 4029

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 349  gcctgtagcccgccaaaatccagc 372
            ||||| ||||||||||||||||||
Sbjct: 1478 gcctgcagcccgccaaaatccagc 1501



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 184      aagaaatcaattggaaaaac 203
                ||||||||||||||||||||
Sbjct: 10429419 aagaaatcaattggaaaaac 10429400



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>gb|AC007396.6|AC007396 Genomic sequence for Arabidopsis thaliana BAC T4O12 from chromosome I,
             complete sequence
          Length = 95870

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 501   atcaagcttcagaatctcca 520
             ||||||||||||||||||||
Sbjct: 73353 atcaagcttcagaatctcca 73372



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>dbj|AP005091.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1104_G11
          Length = 140093

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    aagaaatcaattggaaaaac 203
              ||||||||||||||||||||
Sbjct: 137124 aagaaatcaattggaaaaac 137105



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>dbj|AP005704.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0448B03
          Length = 147748

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   aagaaatcaattggaaaaac 203
             ||||||||||||||||||||
Sbjct: 29798 aagaaatcaattggaaaaac 29779



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>gb|AC157472.3| Medicago truncatula chromosome 7 BAC clone mth2-41h16, complete
             sequence
          Length = 114287

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 74    aagacggttattcattcatataaa 97
             ||||||||||||| ||||||||||
Sbjct: 96079 aagacggttattctttcatataaa 96102



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>emb|AL133444.4|CNS01DV0 Human chromosome 14 DNA sequence BAC R-724F15 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 192387

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   gtttccatatttcaactaga 175
             ||||||||||||||||||||
Sbjct: 82040 gtttccatatttcaactaga 82059



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>gb|AE003563.4| Drosophila melanogaster chromosome 3L, section 22 of 83 of the complete
             sequence
          Length = 264966

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   agaaatcaattggaaaaaca 204
             ||||||||||||||||||||
Sbjct: 22213 agaaatcaattggaaaaaca 22232



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>gb|AC004767.1|AC004767 Drosophila melanogaster DNA sequence (P1s DS01986 (D261), DS01814 (D252),
              and DS08881 (D260)), complete sequence
          Length = 196672

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 185    agaaatcaattggaaaaaca 204
              ||||||||||||||||||||
Sbjct: 166919 agaaatcaattggaaaaaca 166900



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>gb|AC005492.1|AC005492 Homo sapiens clone UWGC:g1564a021 from 7p14-15, complete sequence
          Length = 40460

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 538   aaatttaaattgtaaagatt 557
             ||||||||||||||||||||
Sbjct: 20003 aaatttaaattgtaaagatt 20022



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>gb|AC147596.5| Gallus gallus BAC clone CH261-29A2 from chromosome unknown, complete
             sequence
          Length = 190789

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 663   ttggacaaccaggtacagtt 682
             ||||||||||||||||||||
Sbjct: 44471 ttggacaaccaggtacagtt 44490



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>gb|U84749.1|DMU84749 Drosophila melanogaster cuticle protein LCP65Aa gene, complete cds
          Length = 1585

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 185  agaaatcaattggaaaaaca 204
            ||||||||||||||||||||
Sbjct: 1199 agaaatcaattggaaaaaca 1218



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>gb|DQ272236.1| Homo sapiens G protein-coupled receptor 154 (GPR154) gene, complete cds
          Length = 195685

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 538   aaatttaaattgtaaagatt 557
             ||||||||||||||||||||
Sbjct: 74813 aaatttaaattgtaaagatt 74832



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>emb|AL772320.12| Mouse DNA sequence from clone RP23-346F2 on chromosome 4, complete
             sequence
          Length = 211321

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 376   tttatttgtggacaagagtg 395
             ||||||||||||||||||||
Sbjct: 81599 tttatttgtggacaagagtg 81618


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,747,208
Number of Sequences: 3902068
Number of extensions: 6747208
Number of successful extensions: 125797
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 125464
Number of HSP's gapped (non-prelim): 324
length of query: 721
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 698
effective length of database: 17,143,297,704
effective search space: 11966021797392
effective search space used: 11966021797392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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