Clone Name | rbags9k02 |
---|---|
Clone Library Name | barley_pub |
>gb|BT018755.1| Zea mays clone EL01N0523E09.d mRNA sequence Length = 2199 Score = 190 bits (96), Expect = 4e-45 Identities = 260/312 (83%), Gaps = 2/312 (0%) Strand = Plus / Minus Query: 384 tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 443 ||||||||| |||||||| |||| |||||| |||| |||| ||||| |||||||| | Sbjct: 1755 tggacaagaatgcacattaaggacctccaacgcacaacaaagggatattgcagattctaa 1696 Query: 444 ttcatcctcttgcaacattgtgcatgccaaaagttggaggttagccaatcttgggcaatc 503 ||| |||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| Sbjct: 1695 ttcctcctcttgcaacatggtgcatgccaaaagttggaggttggtcaatcttgggcaatc 1636 Query: 504 aagcttcagaatctccagtgagttacaattactcaaatttaaattgtaaagattgtagca 563 ||||||||| | |||||||||| ||||||| ||||| ||||| | |||||||| |||| Sbjct: 1635 aagcttcagcacctccagtgagctacaattgctcaagtttaacgttaaaagattggagca 1576 Query: 564 cttcaaatctacttcctttcaagtttgcagacaaattaaggttgatcttagacaaattca 623 ||||||| |||||| |||||||| | || | |||||| || || || ||||||| Sbjct: 1575 tgtcaaatccacttcc-ttcaagttggttgaaagattaagattaattttggacaaatgtg 1517 Query: 624 gatagttggccgttgaaggaataacaactttcttaatatttggacaaccaggtacagttg 683 | |||| || | |||||||||||||||||||||||||| || || ||| ||||| ||| Sbjct: 1516 aaaagtttgctatcgaaggaataacaactttcttaatattagggcaccca-gtacaattg 1458 Query: 684 agaacttcaagc 695 |||||||||||| Sbjct: 1457 agaacttcaagc 1446
>dbj|AK072011.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102A05, full insert sequence Length = 1911 Score = 182 bits (92), Expect = 1e-42 Identities = 259/312 (83%), Gaps = 2/312 (0%) Strand = Plus / Minus Query: 384 tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 443 ||||||||||||||||||||| ||||||||||||| ||| |||| |||||||| || Sbjct: 1442 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 1383 Query: 444 ttcatcctcttgcaacattgtgcatgccaaaagttggaggttagccaatcttgggcaatc 503 ||| || ||||||||||| |||||||||| ||||||||| || | || |||||||||||| Sbjct: 1382 ttcctcatcttgcaacatggtgcatgccagaagttggagatttgtcagtcttgggcaatc 1323 Query: 504 aagcttcagaatctccagtgagttacaattactcaaatttaaattgtaaagattgtagca 563 ||||||||||| |||||| ||| ||||||| |||| || ||| | ||||||||| |||| Sbjct: 1322 aagcttcagaacctccagggagctacaattgctcaggttcaaagtataaagattggagca 1263 Query: 564 cttcaaatctacttcctttcaagtttgcagacaaattaaggttgatcttagacaaattca 623 ||||||| ||||||||| || |||| |||| |||||| ||||| ||||||| | Sbjct: 1262 tgtcaaatccacttccttt-aaatttgtggacagattaagattgattttagacaggcgta 1204 Query: 624 gatagttggccgttgaaggaataacaactttcttaatatttggacaaccaggtacagttg 683 ||||| | | | ||||||| || | |||||||||||||||||||||||| ||||| || Sbjct: 1203 gataggttgtcattgaagggatgatgactttcttaatatttggacaacca-gtacaattc 1145 Query: 684 agaacttcaagc 695 |||||||||||| Sbjct: 1144 agaacttcaagc 1133
>dbj|AK070796.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023067J12, full insert sequence Length = 2385 Score = 174 bits (88), Expect = 3e-40 Identities = 258/312 (82%), Gaps = 2/312 (0%) Strand = Plus / Minus Query: 384 tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 443 ||||||||||||||||||||| ||||||||||||| ||| |||| |||||||| || Sbjct: 1884 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 1825 Query: 444 ttcatcctcttgcaacattgtgcatgccaaaagttggaggttagccaatcttgggcaatc 503 ||| || ||| ||||||| |||||||||| ||||||||| || | || |||||||||||| Sbjct: 1824 ttcctcatctcgcaacatggtgcatgccagaagttggagatttgtcagtcttgggcaatc 1765 Query: 504 aagcttcagaatctccagtgagttacaattactcaaatttaaattgtaaagattgtagca 563 ||||||||||| |||||| ||| ||||||| |||| || ||| | ||||||||| |||| Sbjct: 1764 aagcttcagaacctccagggagctacaattgctcaggttcaaagtataaagattggagca 1705 Query: 564 cttcaaatctacttcctttcaagtttgcagacaaattaaggttgatcttagacaaattca 623 ||||||| ||||||||| || |||| |||| |||||| ||||| ||||||| | Sbjct: 1704 tgtcaaatccacttccttt-aaatttgtggacagattaagattgattttagacaggcgta 1646 Query: 624 gatagttggccgttgaaggaataacaactttcttaatatttggacaaccaggtacagttg 683 ||||| | | | ||||||| || | |||||||||||||||||||||||| ||||| || Sbjct: 1645 gataggttgtcattgaagggatgatgactttcttaatatttggacaacca-gtacaattc 1587 Query: 684 agaacttcaagc 695 |||||||||||| Sbjct: 1586 agaacttcaagc 1575
>gb|BT018349.1| Zea mays clone EL01T0403E10.c mRNA sequence Length = 1020 Score = 141 bits (71), Expect = 4e-30 Identities = 253/311 (81%), Gaps = 2/311 (0%) Strand = Plus / Minus Query: 384 tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 443 ||||||||| |||||||| |||| |||||| |||| |||| ||||| |||||||| | Sbjct: 400 tggacaagaatgcacattaaggaactccaacgcactacaaagggatattgcagattctaa 341 Query: 444 ttcatcctcttgcaacattgtgcatgccaaaagttggaggttagccaatcttgggcaatc 503 ||| |||||||||||||| ||||||||| ||| ||||| || | ||||||||||||||| Sbjct: 340 ttcctcctcttgcaacatgatgcatgccagaagctggagattggacaatcttgggcaatc 281 Query: 504 aagcttcagaatctccagtgagttacaattactcaaatttaaattgtaaagattgtagca 563 ||||||||| | |||||||||| |||| || ||||| ||||| | |||||||| || Sbjct: 280 aagcttcagcacctccagtgagctacagttgctcaagtttaacgttaaaagattgggaca 221 Query: 564 cttcaaatctacttcctttcaagtttgcagacaaattaaggttgatcttagacaaattca 623 ||||||| |||||| |||||||| | || | |||||| || || || | ||||| | Sbjct: 220 tgtcaaatccacttcc-ttcaagttggtcgaaagattaagattaattttggccaaatgta 162 Query: 624 gatagttggccgttgaaggaataacaactttcttaatatttggacaaccaggtacagttg 683 || |||| || |||||||||||||||||||||| ||||| || || ||| ||||| ||| Sbjct: 161 gaaagttcgctattgaaggaataacaactttcttgatattagggcaccca-gtacaattg 103 Query: 684 agaacttcaag 694 ||||||||||| Sbjct: 102 agaacttcaag 92 Score = 44.1 bits (22), Expect = 0.63 Identities = 37/42 (88%) Strand = Plus / Minus Query: 304 tatgcgatgaggctgctctgaatgcgcttgagagttgggcaa 345 |||| ||||||||||||||| |||||||| ||| | |||||| Sbjct: 480 tatgagatgaggctgctctggatgcgcttcagactggggcaa 439
>ref|NM_196336.1| Oryza sativa (japonica cultivar-group) putative F-box protein family (OSJNAa0011L09.13), mRNA Length = 3459 Score = 79.8 bits (40), Expect = 1e-11 Identities = 76/88 (86%) Strand = Plus / Minus Query: 384 tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 443 ||||||||||||||||||||| ||||||||||||| ||| |||| |||||||| || Sbjct: 2757 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 2698 Query: 444 ttcatcctcttgcaacattgtgcatgcc 471 ||| || ||||||||||| ||||||||| Sbjct: 2697 ttcctcatcttgcaacatggtgcatgcc 2670
>gb|AC122144.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0011L09, complete sequence Length = 121055 Score = 79.8 bits (40), Expect = 1e-11 Identities = 76/88 (86%) Strand = Plus / Plus Query: 384 tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 443 ||||||||||||||||||||| ||||||||||||| ||| |||| |||||||| || Sbjct: 76107 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 76166 Query: 444 ttcatcctcttgcaacattgtgcatgcc 471 ||| || ||||||||||| ||||||||| Sbjct: 76167 ttcctcatcttgcaacatggtgcatgcc 76194 Score = 63.9 bits (32), Expect = 7e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 474 aagttggaggttagccaatcttgggcaatcaagcttcagaatctccagtgagttacaatt 533 ||||||||| || | || ||||||||||||||||||||||| |||||| ||| ||||||| Sbjct: 77343 aagttggagatttgtcagtcttgggcaatcaagcttcagaacctccagggagctacaatt 77402 Score = 60.0 bits (30), Expect = 1e-05 Identities = 43/46 (93%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 650 actttcttaatatttggacaaccaggtacagttgagaacttcaagc 695 |||||||||||||||||||||||| ||||| || |||||||||||| Sbjct: 77600 actttcttaatatttggacaacca-gtacaattcagaacttcaagc 77644
>gb|AC108884.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBb0058B20 from chromosome 10, complete sequence Length = 156232 Score = 79.8 bits (40), Expect = 1e-11 Identities = 76/88 (86%) Strand = Plus / Minus Query: 384 tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 443 ||||||||||||||||||||| ||||||||||||| ||| |||| |||||||| || Sbjct: 141181 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 141122 Query: 444 ttcatcctcttgcaacattgtgcatgcc 471 ||| || ||||||||||| ||||||||| Sbjct: 141121 ttcctcatcttgcaacatggtgcatgcc 141094 Score = 63.9 bits (32), Expect = 7e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 474 aagttggaggttagccaatcttgggcaatcaagcttcagaatctccagtgagttacaatt 533 ||||||||| || | || ||||||||||||||||||||||| |||||| ||| ||||||| Sbjct: 139945 aagttggagatttgtcagtcttgggcaatcaagcttcagaacctccagggagctacaatt 139886 Score = 60.0 bits (30), Expect = 1e-05 Identities = 43/46 (93%), Gaps = 1/46 (2%) Strand = Plus / Minus Query: 650 actttcttaatatttggacaaccaggtacagttgagaacttcaagc 695 |||||||||||||||||||||||| ||||| || |||||||||||| Sbjct: 139688 actttcttaatatttggacaacca-gtacaattcagaacttcaagc 139644
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 79.8 bits (40), Expect = 1e-11 Identities = 76/88 (86%) Strand = Plus / Plus Query: 384 tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 443 ||||||||||||||||||||| ||||||||||||| ||| |||| |||||||| || Sbjct: 12779668 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 12779727 Query: 444 ttcatcctcttgcaacattgtgcatgcc 471 ||| || ||||||||||| ||||||||| Sbjct: 12779728 ttcctcatcttgcaacatggtgcatgcc 12779755 Score = 63.9 bits (32), Expect = 7e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 474 aagttggaggttagccaatcttgggcaatcaagcttcagaatctccagtgagttacaatt 533 ||||||||| || | || ||||||||||||||||||||||| |||||| ||| ||||||| Sbjct: 12780904 aagttggagatttgtcagtcttgggcaatcaagcttcagaacctccagggagctacaatt 12780963 Score = 60.0 bits (30), Expect = 1e-05 Identities = 43/46 (93%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 650 actttcttaatatttggacaaccaggtacagttgagaacttcaagc 695 |||||||||||||||||||||||| ||||| || |||||||||||| Sbjct: 12781161 actttcttaatatttggacaacca-gtacaattcagaacttcaagc 12781205
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 79.8 bits (40), Expect = 1e-11 Identities = 76/88 (86%) Strand = Plus / Plus Query: 384 tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 443 ||||||||||||||||||||| ||||||||||||| ||| |||| |||||||| || Sbjct: 12787009 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 12787068 Query: 444 ttcatcctcttgcaacattgtgcatgcc 471 ||| || ||||||||||| ||||||||| Sbjct: 12787069 ttcctcatcttgcaacatggtgcatgcc 12787096 Score = 63.9 bits (32), Expect = 7e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 474 aagttggaggttagccaatcttgggcaatcaagcttcagaatctccagtgagttacaatt 533 ||||||||| || | || ||||||||||||||||||||||| |||||| ||| ||||||| Sbjct: 12788245 aagttggagatttgtcagtcttgggcaatcaagcttcagaacctccagggagctacaatt 12788304 Score = 60.0 bits (30), Expect = 1e-05 Identities = 43/46 (93%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 650 actttcttaatatttggacaaccaggtacagttgagaacttcaagc 695 |||||||||||||||||||||||| ||||| || |||||||||||| Sbjct: 12788502 actttcttaatatttggacaacca-gtacaattcagaacttcaagc 12788546
>gb|AC116412.19| Mus musculus chromosome 5, clone RP24-82A20, complete sequence Length = 191823 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 acaagaaatcaattggaaaaa 202 ||||||||||||||||||||| Sbjct: 163256 acaagaaatcaattggaaaaa 163236
>gb|BC024318.1| Homo sapiens PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:3915414) Length = 4152 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 649 aactttcttaatatttggaca 669 ||||||||||||||||||||| Sbjct: 2508 aactttcttaatatttggaca 2528
>gb|AC006348.3| Homo sapiens PAC clone RP5-876K2 from 7, complete sequence Length = 135883 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 182 acaagaaatcaattggaaaaa 202 ||||||||||||||||||||| Sbjct: 117289 acaagaaatcaattggaaaaa 117309
>emb|BX647740.1|HSM807886 Homo sapiens mRNA; cDNA DKFZp686K19283 (from clone DKFZp686K19283) Length = 3532 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 649 aactttcttaatatttggaca 669 ||||||||||||||||||||| Sbjct: 1887 aactttcttaatatttggaca 1907
>ref|NM_175854.5| Homo sapiens PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae) (PAN3), mRNA Length = 4877 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 649 aactttcttaatatttggaca 669 ||||||||||||||||||||| Sbjct: 3247 aactttcttaatatttggaca 3267
>emb|AL773543.3| Human DNA sequence from clone DAQB-187P15 on chromosome 6 Contains the MTCO3P1 pseudogene for cytochrome c oxidase III, the HLA-DQB3 pseudogene for major histocompatibility complex, class II, DQ beta 3, the HLA-DQA2 gene for major histocompatibility complex, class II, DQ alpha 2, the HLA-DQB2 gene for major histocompatibility complex, class II, DQ beta 2 and one CpG island, complete sequence Length = 117303 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 259 tggcttttttgtttcaaatct 279 ||||||||||||||||||||| Sbjct: 66812 tggcttttttgtttcaaatct 66832
>emb|AL138712.19| Human DNA sequence from clone RP11-502P18 on chromosome 13 Contains 3' end of novel gene similar to Drosophila CG11486, and the 3' end of the FLT1 gene for fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor), complete sequence Length = 164519 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 649 aactttcttaatatttggaca 669 ||||||||||||||||||||| Sbjct: 61418 aactttcttaatatttggaca 61438
>dbj|AK091307.1| Homo sapiens cDNA FLJ33988 fis, clone DFNES2006346, weakly similar to PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3 (EC 3.1.13.4) Length = 3208 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 649 aactttcttaatatttggaca 669 ||||||||||||||||||||| Sbjct: 1581 aactttcttaatatttggaca 1601
>gb|AC079856.7| Homo sapiens BAC clone RP11-521B4 from 4, complete sequence Length = 155340 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 533 tactcaaatttaaattgtaaagatt 557 ||||||||| ||||||||||||||| Sbjct: 85341 tactcaaatataaattgtaaagatt 85365
>emb|BX927168.11| Human DNA sequence from clone DAMA-367I24 on chromosome 6, complete sequence Length = 109326 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 259 tggcttttttgtttcaaatct 279 ||||||||||||||||||||| Sbjct: 106780 tggcttttttgtttcaaatct 106800
>emb|CR376859.9| Zebrafish DNA sequence from clone CH211-197D4 in linkage group 10, complete sequence Length = 58467 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 529 caattactcaaatttaaattgtaaa 553 ||||||| ||||||||||||||||| Sbjct: 25568 caattacacaaatttaaattgtaaa 25544
>ref|NM_106247.2| Arabidopsis thaliana unknown protein AT1G75980 mRNA, complete cds Length = 1060 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 atcaagcttcagaatctcca 520 |||||||||||||||||||| Sbjct: 21 atcaagcttcagaatctcca 2
>gb|BC078333.1| Danio rerio SRY-box containing gene 10, mRNA (cDNA clone IMAGE:7168235), complete cds Length = 2255 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 81 ttattcattcatataaatacagat 104 ||||||||||||| |||||||||| Sbjct: 1240 ttattcattcatacaaatacagat 1217
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome Length = 3397754 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 aatggcttttttgtttcaaa 276 |||||||||||||||||||| Sbjct: 1131070 aatggcttttttgtttcaaa 1131051
>gb|AC115013.18| Mus musculus chromosome 10, clone RP24-193P19, complete sequence Length = 183402 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 ttattcattcatataaatac 100 |||||||||||||||||||| Sbjct: 77537 ttattcattcatataaatac 77518
>gb|AC146027.2| Pan troglodytes BAC clone RP43-120L21 from 7, complete sequence Length = 182348 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 aaatttaaattgtaaagatt 557 |||||||||||||||||||| Sbjct: 167235 aaatttaaattgtaaagatt 167254
>ref|NM_131875.1| Danio rerio SRY-box containing gene 10 (sox10), mRNA Length = 3231 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 81 ttattcattcatataaatacagat 104 ||||||||||||| |||||||||| Sbjct: 2223 ttattcattcatacaaatacagat 2200
>gb|AC079276.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-446B13, complete sequence Length = 205177 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 atttcagttcatcctcttgc 456 |||||||||||||||||||| Sbjct: 133427 atttcagttcatcctcttgc 133446
>gb|AC004884.1| Homo sapiens PAC clone RP4-778K6 from 7, complete sequence Length = 138244 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 534 actcaaatttaaattgtaaa 553 |||||||||||||||||||| Sbjct: 6867 actcaaatttaaattgtaaa 6886
>ref|XM_803203.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510397.10) partial mRNA Length = 579 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 gacaatggcttttttgtttc 273 |||||||||||||||||||| Sbjct: 304 gacaatggcttttttgtttc 323
>ref|XM_809478.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510609.20) partial mRNA Length = 579 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 gacaatggcttttttgtttc 273 |||||||||||||||||||| Sbjct: 304 gacaatggcttttttgtttc 323
>gb|AC127278.4| Mus musculus BAC clone RP24-224D24 from chromosome 18, complete sequence Length = 149172 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 506 gcttcagaatctccagtgag 525 |||||||||||||||||||| Sbjct: 111504 gcttcagaatctccagtgag 111523
>gb|AC127301.3| Mus musculus BAC clone RP23-269N6 from 18, complete sequence Length = 166565 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 506 gcttcagaatctccagtgag 525 |||||||||||||||||||| Sbjct: 163199 gcttcagaatctccagtgag 163180
>gb|AC099413.3| Mus musculus BAC clone RP23-2O10 from 4, complete sequence Length = 208798 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 tttatttgtggacaagagtg 395 |||||||||||||||||||| Sbjct: 207754 tttatttgtggacaagagtg 207735
>gb|AC117189.3| Mus musculus BAC clone RP23-44D2 from 8, complete sequence Length = 165254 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 505 agcttcagaatctccagtga 524 |||||||||||||||||||| Sbjct: 66147 agcttcagaatctccagtga 66166
>emb|BX284668.4| Human DNA sequence from clone RP11-108M9 on chromosome 1 Contains four novel genes, a novel pseudogene, the 5' end of the CROCC gene for ciliary rootlet coiled-coil rootletin (KIAA0445) and two CpG islands, complete sequence Length = 93826 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 attcagcacaagaaatcaat 194 |||||||||||||||||||| Sbjct: 15037 attcagcacaagaaatcaat 15018
>gb|AC008009.5| Homo sapiens 3 BAC RP11-436A20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 212349 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 ttcattcatataaatacaga 103 |||||||||||||||||||| Sbjct: 117673 ttcattcatataaatacaga 117654
>emb|AL021920.1|HS163M9 Human DNA sequence from clone RP1-163M9 on chromosome 1p35.1-36.21 Contains a novel pseudogene, a eukaryotic translation initiation factor 1A pseudogene 1 (EIF1AP1), part of a novel gene (LOC284729), a macrophage stimulating 1 (hepatocyte growth factor-like)(MST1) pseudogene and five CpG islands, complete sequence Length = 118067 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 attcagcacaagaaatcaat 194 |||||||||||||||||||| Sbjct: 48460 attcagcacaagaaatcaat 48441
>ref|XM_786002.1| PREDICTED: Strongylocentrotus purpuratus similar to Ubiquitin ligase protein MIB2 (Mind bomb homolog 2) (RBSC-skeletrophin/dystrophin-like polypeptide) (LOC586211), mRNA Length = 2664 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 564 cttcaaatctacttcctttc 583 |||||||||||||||||||| Sbjct: 1572 cttcaaatctacttcctttc 1553
>emb|CR628336.1| Legionella pneumophila str. Paris complete genome Length = 3503610 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 aatggcttttttgtttcaaa 276 |||||||||||||||||||| Sbjct: 2691148 aatggcttttttgtttcaaa 2691167
>gb|AC104849.2| Homo sapiens chromosome 3 clone RP11-154D3, complete sequence Length = 165849 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 ttttttgtttcaaatctgga 282 |||||||||||||||||||| Sbjct: 103467 ttttttgtttcaaatctgga 103448
>gb|AF480912.1| Legionella pneumophila clone pA37F putative lipoprotein (plpA), putative copper efflux ATPase (copA2), chemiosmotic efflux system C protein A (cecA), chemiosmotic efflux system C protein B (cecB), chemiosmotic efflux system C protein C (cecC), putative copper efflux ATPase (copA1), chemiosmotic efflux system B protein A (cebA), chemiosmotic efflux system B protein B (cebB), chemiosmotic efflux system B protein C (cebC), putative cation efflux transporter (ctpA), putative cadmium efflux ATPase (cadA1), and cadA2 genes, complete cds; and unknown genes Length = 38800 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 aatggcttttttgtttcaaa 276 |||||||||||||||||||| Sbjct: 8184 aatggcttttttgtttcaaa 8203
>emb|BX005425.12| Zebrafish DNA sequence from clone DKEY-7O6 in linkage group 8, complete sequence Length = 252440 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 531 attactcaaatttaaattgtaaag 554 |||| ||||||||||||||||||| Sbjct: 116531 attaatcaaatttaaattgtaaag 116508
>gb|AC010715.6| Drosophila melanogaster 3L BAC RP98-9G21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174551 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 agaaatcaattggaaaaaca 204 |||||||||||||||||||| Sbjct: 73633 agaaatcaattggaaaaaca 73652
>gb|AC105939.2| Homo sapiens chromosome 3 clone RP11-241A5, complete sequence Length = 97387 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 ttttttgtttcaaatctgga 282 |||||||||||||||||||| Sbjct: 15709 ttttttgtttcaaatctgga 15690
>gb|DP000063.1| Oryctolagus cuniculus target 117 genomic scaffold Length = 489372 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 aatggcttttttgtttcaaa 276 |||||||||||||||||||| Sbjct: 25788 aatggcttttttgtttcaaa 25807
>dbj|AK145723.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0033L07 product:transportin 3, full insert sequence Length = 2616 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 atttcagttcatcctcttgc 456 |||||||||||||||||||| Sbjct: 2440 atttcagttcatcctcttgc 2421
>gb|AF402677.1|AF402677 Danio rerio HMG-box transcription factor Sox10 (sox10) mRNA, complete cds Length = 3231 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 81 ttattcattcatataaatacagat 104 ||||||||||||| |||||||||| Sbjct: 2223 ttattcattcatacaaatacagat 2200
>gb|AY036106.1| Chlamydomonas reinhardtii hydroxyproline-rich glycoprotein VSP4 mRNA, complete cds Length = 4029 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 349 gcctgtagcccgccaaaatccagc 372 ||||| |||||||||||||||||| Sbjct: 1478 gcctgcagcccgccaaaatccagc 1501
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 aagaaatcaattggaaaaac 203 |||||||||||||||||||| Sbjct: 10429419 aagaaatcaattggaaaaac 10429400
>gb|AC007396.6|AC007396 Genomic sequence for Arabidopsis thaliana BAC T4O12 from chromosome I, complete sequence Length = 95870 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 501 atcaagcttcagaatctcca 520 |||||||||||||||||||| Sbjct: 73353 atcaagcttcagaatctcca 73372
>dbj|AP005091.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1104_G11 Length = 140093 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 aagaaatcaattggaaaaac 203 |||||||||||||||||||| Sbjct: 137124 aagaaatcaattggaaaaac 137105
>dbj|AP005704.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0448B03 Length = 147748 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 aagaaatcaattggaaaaac 203 |||||||||||||||||||| Sbjct: 29798 aagaaatcaattggaaaaac 29779
>gb|AC157472.3| Medicago truncatula chromosome 7 BAC clone mth2-41h16, complete sequence Length = 114287 Score = 40.1 bits (20), Expect = 9.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 aagacggttattcattcatataaa 97 ||||||||||||| |||||||||| Sbjct: 96079 aagacggttattctttcatataaa 96102
>emb|AL133444.4|CNS01DV0 Human chromosome 14 DNA sequence BAC R-724F15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 192387 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 gtttccatatttcaactaga 175 |||||||||||||||||||| Sbjct: 82040 gtttccatatttcaactaga 82059
>gb|AE003563.4| Drosophila melanogaster chromosome 3L, section 22 of 83 of the complete sequence Length = 264966 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 agaaatcaattggaaaaaca 204 |||||||||||||||||||| Sbjct: 22213 agaaatcaattggaaaaaca 22232
>gb|AC004767.1|AC004767 Drosophila melanogaster DNA sequence (P1s DS01986 (D261), DS01814 (D252), and DS08881 (D260)), complete sequence Length = 196672 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 agaaatcaattggaaaaaca 204 |||||||||||||||||||| Sbjct: 166919 agaaatcaattggaaaaaca 166900
>gb|AC005492.1|AC005492 Homo sapiens clone UWGC:g1564a021 from 7p14-15, complete sequence Length = 40460 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 aaatttaaattgtaaagatt 557 |||||||||||||||||||| Sbjct: 20003 aaatttaaattgtaaagatt 20022
>gb|AC147596.5| Gallus gallus BAC clone CH261-29A2 from chromosome unknown, complete sequence Length = 190789 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 663 ttggacaaccaggtacagtt 682 |||||||||||||||||||| Sbjct: 44471 ttggacaaccaggtacagtt 44490
>gb|U84749.1|DMU84749 Drosophila melanogaster cuticle protein LCP65Aa gene, complete cds Length = 1585 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 agaaatcaattggaaaaaca 204 |||||||||||||||||||| Sbjct: 1199 agaaatcaattggaaaaaca 1218
>gb|DQ272236.1| Homo sapiens G protein-coupled receptor 154 (GPR154) gene, complete cds Length = 195685 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 aaatttaaattgtaaagatt 557 |||||||||||||||||||| Sbjct: 74813 aaatttaaattgtaaagatt 74832
>emb|AL772320.12| Mouse DNA sequence from clone RP23-346F2 on chromosome 4, complete sequence Length = 211321 Score = 40.1 bits (20), Expect = 9.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 tttatttgtggacaagagtg 395 |||||||||||||||||||| Sbjct: 81599 tttatttgtggacaagagtg 81618 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,747,208 Number of Sequences: 3902068 Number of extensions: 6747208 Number of successful extensions: 125797 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 125464 Number of HSP's gapped (non-prelim): 324 length of query: 721 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 698 effective length of database: 17,143,297,704 effective search space: 11966021797392 effective search space used: 11966021797392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)