Clone Information

BLAST Search Result

Clone Name	rbags9k01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|BT009646.1\| Triticum aestivum clone wrsu1.pk0006.a3:fis, full...	916	0.0
2	ref\|XM_464784.1\| Oryza sativa (japonica cultivar-group), mRNA	323	4e-85
3	gb\|AY568677.1\| Oryza sativa (japonica cultivar-group) proline- a...	303	4e-79
4	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	272	1e-69
5	dbj\|AP005756.3\| Oryza sativa (japonica cultivar-group) genomic D...	272	1e-69
6	dbj\|AK058752.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	228	2e-56
7	ref\|NM_191846.1\| Oryza sativa (japonica cultivar-group), predic...	52	0.002
8	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
9	dbj\|AP003343.3\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
10	dbj\|AK100192.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	52	0.002
11	gb\|AC010242.7\| Homo sapiens chromosome 5 clone CTC-359E10, compl...	46	0.15
12	gb\|AC008816.8\| Homo sapiens chromosome 5 clone CTD-2122K17, comp...	46	0.15
13	gb\|AC010280.7\| Homo sapiens chromosome 5 clone CTC-537E7, comple...	46	0.15
14	gb\|AC017093.3\|AC017093 Homo sapiens BAC clone RP11-511G7 from 5,...	46	0.15
15	gb\|AC010157.12\| Homo sapiens chromosome 10 clone RP11-202D18, co...	44	0.59
16	gb\|AC118627.6\| Mus musculus chromosome 15, clone RP24-91E8, comp...	42	2.3
17	gb\|AY582740.1\| Chlamydomonas reinhardtii Fe-hydrogenase assembly...	42	2.3
18	ref\|XM_451567.1\| Kluyveromyces lactis NRRL Y-1140, KLLA0B00825g ...	42	2.3
19	gb\|AC129886.3\| Atelerix albiventris clone LB4-234A16, complete s...	42	2.3
20	emb\|CR382122.1\| Kluyveromyces lactis strain NRRL Y-1140 chromoso...	42	2.3
21	gb\|AC159301.2\| Mus musculus BAC clone RP23-213B1 from chromosome...	42	2.3
22	gb\|DP000003.1\| Atelerix albiventris target 1 genomic scaffold	42	2.3
23	gb\|AC102545.9\| Mus musculus chromosome 9, clone RP23-118J13, com...	40	9.3
24	gb\|AC007245.3\| Homo sapiens BAC clone RP11-273L18 from 7, comple...	40	9.3
25	emb\|CT025841.2\| Medicago truncatula chromosome 5 clone mth2-131j...	40	9.3
26	gb\|AC010099.10\| Homo sapiens BAC clone RP11-420H19 from 7, compl...	40	9.3
27	emb\|AL161517.2\|ATCHRIV29 Arabidopsis thaliana DNA chromosome 4, ...	40	9.3
28	emb\|AL049524.1\|ATF7L13 Arabidopsis thaliana DNA chromosome 4, BA...	40	9.3
29	gb\|AY113188.1\| Mastigamoeba balamuthi aldehyde-alcohol dehydroge...	40	9.3
30	gb\|AC148763.14\| Medicago truncatula clone mth2-29o24, complete s...	40	9.3
31	emb\|BX470154.5\| Zebrafish DNA sequence from clone CH211-81N22, c...	40	9.3
32	gb\|AC093597.3\| Homo sapiens BAC clone RP11-187O17 from 4, comple...	40	9.3
33	gb\|CP000249.1\| Frankia sp. CcI3, complete genome	40	9.3
34	gb\|AC006112.4\| Homo sapiens chromosome 16 clone RP11-472H7, comp...	40	9.3
35	gb\|AF118222.1\|F3H7 Arabidopsis thaliana BAC F3H7	40	9.3
36	gb\|AF142686.1\| Cyclolobium nutans maturase-like protein (matK) g...	40	9.3
37	gb\|AC006120.1\|AC006120 Homo sapiens chromosome 17, clone hRPK.34...	40	9.3
38	gb\|AE008384.1\| Methanosarcina mazei strain Goe1, complete genome	40	9.3
39	gb\|AC155302.2\| Mus musculus BAC clone RP24-227A11 from chromosom...	40	9.3
40	gb\|AC140392.3\| Mus musculus BAC clone RP24-89F9 from chromosome ...	40	9.3

>gb|BT009646.1| Triticum aestivum clone wrsu1.pk0006.a3:fis, full insert mRNA
           sequence
          Length = 936

 Score =  916 bits (462), Expect = 0.0
 Identities = 519/537 (96%), Gaps = 1/537 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagatagcatcaatna-gaaaaatgcgtggtaggaagaaatttagccaagaaacaccca 59
           ||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 124 caagatagcatcaatcaagaaaaatgcgtgggaggaagaaatttagccaagaaacaccaa 183

                                                                       
Query: 60  tgactaaaactagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagc 119
           ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tgactaaaattagtagtggaattcatttgccttcttgaagaccccagcttgggcagaagc 243

                                                                       
Query: 120 agcactatcagaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgg 179
           ||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 244 agcaccatcagaggtcacggccacgacgatgcagtccttcacctgctgggtggtaaatgg 303

                                                                       
Query: 180 gaacttgttgttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgcc 239
           |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 304 gaacttcttgttcacaatggagttgaggtatgcagctgccccctcacgtatcagggcgcc 363

                                                                       
Query: 240 aataccatcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aataccatcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacc 423

                                                                       
Query: 300 tatcatactgcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tatcatactgcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgc 483

                                                                       
Query: 360 aattatagcgtctgggtgattcttccagaagtcgcaggatccaatgaatccatgcttctt 419
           || |||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 484 aactatagcatctgggtgattcttccagtagtcgcaggatccaatgaacccatgcttctt 543

                                                                       
Query: 420 tggacttgcagggacttcatgggaaggtgtacttggggtgctcggtgtagtgccgtaaga 479
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tggacttgcagggacatcatgggaaggtgtacttggggtgctcggtgtagtgccgtaaga 603

                                                                    
Query: 480 tggcgtcggtgtagtgccataagatggcgtcggtgtagtgccgtaagatggcgtcgg 536
           |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 604 tggcgtcggtgtagtgccgtaagatggcgtcggtgtagtgccgtaagttggcgtcgg 660



 Score =  242 bits (122), Expect = 1e-60
 Identities = 154/165 (93%), Gaps = 6/165 (3%)
 Strand = Plus / Plus

                                                                       
Query: 461 tcggtgtagtgccgtaagatggcgtcggtgtagtgccataagatggcgtcggtgtagtgc 520
           ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 609 tcggtgtagtgccgtaagatggcgtcggtgtagtgccgtaagttggcgtcggtgtagtgc 668

                                                                       
Query: 521 cgtaagatggcgtcggcgttggtgtagtaccgtaagttggtgtcggtgtcgggttgtagc 580
           ||||||||||||||||      |||||| ||||||||||||||||||||||| |||||||
Sbjct: 669 cgtaagatggcgtcgg------tgtagtgccgtaagttggtgtcggtgtcggattgtagc 722

                                                        
Query: 581 ctcctcctgacccatgcgagggagttggtgagcccccatagtggg 625
           |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 723 ctcctcctgacccatgcgtgggagttggtgagcccccatagtggg 767



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 642 ggtcttctgctcatgcaactcttccangctcctgca 677
           |||||||||||||||||||||| ||| |||||||||
Sbjct: 766 ggtcttctgctcatgcaactctcccaggctcctgca 801

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>ref|XM_464784.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 660

 Score =  323 bits (163), Expect = 4e-85
 Identities = 387/462 (83%), Gaps = 6/462 (1%)
 Strand = Plus / Minus

                                                                       
Query: 69  ctagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagcagcactatc 128
           |||||||||  | ||||||||||||||||||| | |||| |||| ||||||||| | |||
Sbjct: 660 ctagtagtgataatcatttgccttcttgaagatctcagcctgggaagaagcagcgccatc 601

                                                                       
Query: 129 agaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgggaacttgtt 188
           |||||||  ||||||||||||||| ||||| ||||| ||||| ||||| ||||| || ||
Sbjct: 600 agaggtcatggccacgacgatgcaatccttaacctgttgggtggtaaaagggaatttctt 541

                                                                       
Query: 189 gttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgccaataccatc 248
           |||||||||||||||||||||||||||||| |||||||| | ||| || ||| |||||||
Sbjct: 540 gttcacaatggagttgaggtatgcagctgctccctcgcggagcagagcaccagtaccatc 481

                                                                       
Query: 249 agttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacctatcatact 308
           ||||| ||||||||| ||||||||||| | |||| ||||||||||||||   |||| |||
Sbjct: 480 agttccagtgtttgaaagtgcatcatgaagattttctagcttcttgccagtgatcaaact 421

                                                                       
Query: 309 gcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgcaattatagc 368
           ||| |||| ||| | ||||||||| |||| ||||||||||||||||||||  || ||| |
Sbjct: 420 gcaagcagtaccgagtgtcttgccaatgtcgccaagggacccaatagctgagatgataac 361

                                                                       
Query: 369 gtctgggtgattcttccagaagtcgcaggatccaatgaatccatgcttctttggacttgc 428
            ||||| || ||||||||| | ||||||||||||  |||  |||||||  | |||  | |
Sbjct: 360 atctggatggttcttccagtaatcgcaggatccacagaaatcatgctttgtcggaacttc 301

                                                                       
Query: 429 agggacttcatgggaaggtgtacttggggtgctcggtgtagtgccgtaagatggcgtcgg 488
           |||||| |||      ||||| || |||||||| ||||| |||||||||||||| || ||
Sbjct: 300 agggacatca------ggtgtgctgggggtgcttggtgtcgtgccgtaagatggtgttgg 247

                                                     
Query: 489 tgtagtgccataagatggcgtcggtgtagtgccgtaagatgg 530
           ||||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 246 tgtagtgccgtaagatggtgttggtgtagtgccataagatgg 205



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                       
Query: 463 ggtgtagtgccgtaagatggcgtcggtgtagtgccataagatggcgtcggtgtagtgccg 522
           |||||||||||||||||||| || |||||||||||||||||||| || ||||||| ||||
Sbjct: 248 ggtgtagtgccgtaagatggtgttggtgtagtgccataagatggtgttggtgtagagccg 189

                                  
Query: 523 taagatggcgtcggcgttggtgt 545
           |||| ||| || || ||||||||
Sbjct: 188 taagctggtgttggggttggtgt 166



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 628 gtagaagaagagtaggtcttctgctcatgcaactcttccangctcctgca 677
           |||| |||||||||||||||||| |||  ||||||| ||| |||||||||
Sbjct: 110 gtagtagaagagtaggtcttctgttcagacaactctcccaggctcctgca 61



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 538 gttggtgtagtaccgtaagttggtgtcggtgt 569
           ||||||||||| ||||||| |||||| |||||
Sbjct: 251 gttggtgtagtgccgtaagatggtgttggtgt 220

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>gb|AY568677.1| Oryza sativa (japonica cultivar-group) proline- and threonine-rich
           protein mRNA, complete cds
          Length = 902

 Score =  303 bits (153), Expect = 4e-79
 Identities = 386/464 (83%), Gaps = 6/464 (1%)
 Strand = Plus / Minus

                                                                       
Query: 67  aactagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagcagcacta 126
           |||||||||||  | ||||||||||||||||||| | |||| |||| ||||||||| | |
Sbjct: 726 aactagtagtgataatcatttgccttcttgaagatctcagcctgggaagaagcagcgcca 667

                                                                       
Query: 127 tcagaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgggaacttg 186
           |||||||||  ||||||||||||||| ||||| ||||| ||||| ||||| ||||| || 
Sbjct: 666 tcagaggtcatggccacgacgatgcaatccttaacctgttgggtggtaaaagggaatttc 607

                                                                       
Query: 187 ttgttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgccaatacca 246
           |||||||||||||||||||||||||||||||| |||||||| | ||| || ||| |||||
Sbjct: 606 ttgttcacaatggagttgaggtatgcagctgctccctcgcggagcagagcaccagtacca 547

                                                                       
Query: 247 tcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacctatcata 306
           ||||||| ||||||||| ||||||||||| | |||| ||||||||||||||   |||| |
Sbjct: 546 tcagttccagtgtttgaaagtgcatcatgaagattttctagcttcttgccagtgatcaaa 487

                                                                       
Query: 307 ctgcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgcaattata 366
           ||||| |||| | | | |||| |||| |||| ||||||||||||||||||||  || |||
Sbjct: 486 ctgcaagcagtatcgagtgtcatgccaatgtcgccaagggacccaatagctgagatgata 427

                                                                       
Query: 367 gcgtctgggtgattcttccagaagtcgcaggatccaatgaatccatgcttctttggactt 426
            | ||||| || ||||||||| | ||||||||||||  |||  |||||||  | |||  |
Sbjct: 426 acatctggatggttcttccagtaatcgcaggatccacagaaatcatgctttgtcggaact 367

                                                                       
Query: 427 gcagggacttcatgggaaggtgtacttggggtgctcggtgtagtgccgtaagatggcgtc 486
            ||||||| |||      ||||| || |||| ||| ||||| |||||||||||||| || 
Sbjct: 366 tcagggacatca------ggtgtgctgggggagcttggtgtcgtgccgtaagatggtgtt 313

                                                       
Query: 487 ggtgtagtgccataagatggcgtcggtgtagtgccgtaagatgg 530
           ||||||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 312 ggtgtagtgccgtaagatggtgttggtgtagtgccataagatgg 269



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                       
Query: 463 ggtgtagtgccgtaagatggcgtcggtgtagtgccataagatggcgtcggtgtagtgccg 522
           |||||||||||||||||||| || |||||||||||||||||||| || ||||||| ||||
Sbjct: 312 ggtgtagtgccgtaagatggtgttggtgtagtgccataagatggtgttggtgtagagccg 253

                                  
Query: 523 taagatggcgtcggcgttggtgt 545
           |||| ||| || || ||||||||
Sbjct: 252 taagctggtgttggggttggtgt 230



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 628 gtagaagaagagtaggtcttctgctcatgcaactcttccangctcctgca 677
           |||| |||||||||||||||||| |||  ||||||| ||| |||||||||
Sbjct: 174 gtagtagaagagtaggtcttctgttcagacaactctcccaggctcctgca 125



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 538 gttggtgtagtaccgtaagttggtgtcggtgt 569
           ||||||||||| ||||||| |||||| |||||
Sbjct: 315 gttggtgtagtgccgtaagatggtgttggtgt 284

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  272 bits (137), Expect = 1e-69
 Identities = 275/321 (85%)
 Strand = Plus / Plus

                                                                           
Query: 67      aactagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagcagcacta 126
               |||||||||||  | ||||||||||||||||||| | |||| |||| ||||||||| | |
Sbjct: 7323154 aactagtagtgataatcatttgccttcttgaagatctcagcctgggaagaagcagcgcca 7323213

                                                                           
Query: 127     tcagaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgggaacttg 186
               |||||||||  ||||||||||||||| ||||| ||||| ||||| ||||| ||||| || 
Sbjct: 7323214 tcagaggtcatggccacgacgatgcaatccttaacctgttgggtggtaaaagggaatttc 7323273

                                                                           
Query: 187     ttgttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgccaatacca 246
               |||||||||||||||||||||||||||||||| |||||||| | ||| || ||| |||||
Sbjct: 7323274 ttgttcacaatggagttgaggtatgcagctgctccctcgcggagcagagcaccagtacca 7323333

                                                                           
Query: 247     tcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacctatcata 306
               ||||||| ||||||||| ||||||||||| | |||| ||||||||||||||   |||| |
Sbjct: 7323334 tcagttccagtgtttgaaagtgcatcatgaagattttctagcttcttgccagtgatcaaa 7323393

                                                                           
Query: 307     ctgcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgcaattata 366
               ||||| |||| ||| | ||||||||| |||| ||||||||||||||||||||  || |||
Sbjct: 7323394 ctgcaagcagtaccgagtgtcttgccaatgtcgccaagggacccaatagctgagatgata 7323453

                                    
Query: 367     gcgtctgggtgattcttccag 387
                | ||||| || |||||||||
Sbjct: 7323454 acatctggatggttcttccag 7323474



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                           
Query: 463     ggtgtagtgccgtaagatggcgtcggtgtagtgccataagatggcgtcggtgtagtgccg 522
               |||||||||||||||||||| || |||||||||||||||||||| || ||||||| ||||
Sbjct: 7323653 ggtgtagtgccgtaagatggtgttggtgtagtgccataagatggtgttggtgtagagccg 7323712

                                      
Query: 523     taagatggcgtcggcgttggtgt 545
               |||| ||| || || ||||||||
Sbjct: 7323713 taagctggtgttggggttggtgt 7323735



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 77/87 (88%)
 Strand = Plus / Plus

                                                                           
Query: 444     aggtgtacttggggtgctcggtgtagtgccgtaagatggcgtcggtgtagtgccataaga 503
               |||||| || |||||||| ||||| |||||||||||||| || ||||||||||| |||||
Sbjct: 7323610 aggtgtgctgggggtgcttggtgtcgtgccgtaagatggtgttggtgtagtgccgtaaga 7323669

                                          
Query: 504     tggcgtcggtgtagtgccgtaagatgg 530
               ||| || ||||||||||| ||||||||
Sbjct: 7323670 tggtgttggtgtagtgccataagatgg 7323696



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                 
Query: 628     gtagaagaagagtaggtcttctgctcatgcaactcttccangctcctgca 677
               |||| |||||||||||||||||| |||  ||||||| ||| |||||||||
Sbjct: 7324099 gtagtagaagagtaggtcttctgttcagacaactctcccaggctcctgca 7324148



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 538     gttggtgtagtaccgtaagttggtgtcggtgt 569
               ||||||||||| ||||||| |||||| |||||
Sbjct: 7323650 gttggtgtagtgccgtaagatggtgttggtgt 7323681

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>dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0035N08
          Length = 136267

 Score =  272 bits (137), Expect = 1e-69
 Identities = 275/321 (85%)
 Strand = Plus / Plus

                                                                         
Query: 67    aactagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagcagcacta 126
             |||||||||||  | ||||||||||||||||||| | |||| |||| ||||||||| | |
Sbjct: 98962 aactagtagtgataatcatttgccttcttgaagatctcagcctgggaagaagcagcgcca 99021

                                                                         
Query: 127   tcagaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgggaacttg 186
             |||||||||  ||||||||||||||| ||||| ||||| ||||| ||||| ||||| || 
Sbjct: 99022 tcagaggtcatggccacgacgatgcaatccttaacctgttgggtggtaaaagggaatttc 99081

                                                                         
Query: 187   ttgttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgccaatacca 246
             |||||||||||||||||||||||||||||||| |||||||| | ||| || ||| |||||
Sbjct: 99082 ttgttcacaatggagttgaggtatgcagctgctccctcgcggagcagagcaccagtacca 99141

                                                                         
Query: 247   tcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgccacctatcata 306
             ||||||| ||||||||| ||||||||||| | |||| ||||||||||||||   |||| |
Sbjct: 99142 tcagttccagtgtttgaaagtgcatcatgaagattttctagcttcttgccagtgatcaaa 99201

                                                                         
Query: 307   ctgcatgcagcaccaaatgtcttgccgatgttgccaagggacccaatagctgcaattata 366
             ||||| |||| ||| | ||||||||| |||| ||||||||||||||||||||  || |||
Sbjct: 99202 ctgcaagcagtaccgagtgtcttgccaatgtcgccaagggacccaatagctgagatgata 99261

                                  
Query: 367   gcgtctgggtgattcttccag 387
              | ||||| || |||||||||
Sbjct: 99262 acatctggatggttcttccag 99282



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                         
Query: 463   ggtgtagtgccgtaagatggcgtcggtgtagtgccataagatggcgtcggtgtagtgccg 522
             |||||||||||||||||||| || |||||||||||||||||||| || ||||||| ||||
Sbjct: 99461 ggtgtagtgccgtaagatggtgttggtgtagtgccataagatggtgttggtgtagagccg 99520

                                    
Query: 523   taagatggcgtcggcgttggtgt 545
             |||| ||| || || ||||||||
Sbjct: 99521 taagctggtgttggggttggtgt 99543



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 77/87 (88%)
 Strand = Plus / Plus

                                                                         
Query: 444   aggtgtacttggggtgctcggtgtagtgccgtaagatggcgtcggtgtagtgccataaga 503
             |||||| || |||||||| ||||| |||||||||||||| || ||||||||||| |||||
Sbjct: 99418 aggtgtgctgggggtgcttggtgtcgtgccgtaagatggtgttggtgtagtgccgtaaga 99477

                                        
Query: 504   tggcgtcggtgtagtgccgtaagatgg 530
             ||| || ||||||||||| ||||||||
Sbjct: 99478 tggtgttggtgtagtgccataagatgg 99504



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                               
Query: 628   gtagaagaagagtaggtcttctgctcatgcaactcttccangctcctgca 677
             |||| |||||||||||||||||| |||  ||||||| ||| |||||||||
Sbjct: 99907 gtagtagaagagtaggtcttctgttcagacaactctcccaggctcctgca 99956



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 538   gttggtgtagtaccgtaagttggtgtcggtgt 569
             ||||||||||| ||||||| |||||| |||||
Sbjct: 99458 gttggtgtagtgccgtaagatggtgttggtgt 99489

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>dbj|AK058752.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-H10, full
           insert sequence
          Length = 377

 Score =  228 bits (115), Expect = 2e-56
 Identities = 202/231 (87%)
 Strand = Plus / Minus

                                                                       
Query: 67  aactagtagtgggattcatttgccttcttgaagaccccagcttgggcagaagcagcacta 126
           |||||||||||  | ||||||||||||||||||| | |||| |||| ||||||||| | |
Sbjct: 239 aactagtagtgataatcatttgccttcttgaagatctcagcctgggaagaagcagcgcca 180

                                                                       
Query: 127 tcagaggtcgcggccacgacgatgcagtccttcacctgctgggttgtaaatgggaacttg 186
           |||||||||  ||||||||||||||| ||||| ||||| ||||| ||||| ||||| || 
Sbjct: 179 tcagaggtcatggccacgacgatgcaatccttaacctgttgggtggtaaaagggaatttc 120

                                                                       
Query: 187 ttgttcacaatggagttgaggtatgcagctgccccctcgcgtatcagggcgccaatacca 246
           |||||||||||||||||||||||||||||||| |||||||| | ||| || ||| |||||
Sbjct: 119 ttgttcacaatggagttgaggtatgcagctgctccctcgcggagcagagcaccagtacca 60

                                                              
Query: 247 tcagttctagtgtttgagagtgcatcatgcatatttcctagcttcttgcca 297
           ||||||| ||||||||| ||||||||||| | |||| ||||||||||||||
Sbjct: 59  tcagttccagtgtttgaaagtgcatcatgaagattttctagcttcttgcca 9

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>ref|NM_191846.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1944

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                  
Query: 153  gtccttcacctgctgggttgtaaatgggaacttgttgttcacaatggagttgag 206
            ||||||||||||||| || || || |||||| || ||||||| |||||||||||
Sbjct: 1848 gtccttcacctgctgcgtggtgaaggggaacctgctgttcaccatggagttgag 1795

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                      
Query: 153      gtccttcacctgctgggttgtaaatgggaacttgttgttcacaatggagttgag 206
                ||||||||||||||| || || || |||||| || ||||||| |||||||||||
Sbjct: 30289367 gtccttcacctgctgcgtggtgaaggggaacctgctgttcaccatggagttgag 30289314

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>dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0042A10
          Length = 146840

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                   
Query: 153   gtccttcacctgctgggttgtaaatgggaacttgttgttcacaatggagttgag 206
             ||||||||||||||| || || || |||||| || ||||||| |||||||||||
Sbjct: 77686 gtccttcacctgctgcgtggtgaaggggaacctgctgttcaccatggagttgag 77633

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>dbj|AK100192.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036E12, full
            insert sequence
          Length = 2368

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                  
Query: 153  gtccttcacctgctgggttgtaaatgggaacttgttgttcacaatggagttgag 206
            ||||||||||||||| || || || |||||| || ||||||| |||||||||||
Sbjct: 1937 gtccttcacctgctgcgtggtgaaggggaacctgctgttcaccatggagttgag 1884

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>gb|AC010242.7| Homo sapiens chromosome 5 clone CTC-359E10, complete sequence
          Length = 174293

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 401   caatgaatccatgcttctttgga 423
             |||||||||||||||||||||||
Sbjct: 29046 caatgaatccatgcttctttgga 29024

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>gb|AC008816.8| Homo sapiens chromosome 5 clone CTD-2122K17, complete sequence
          Length = 174293

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 401   caatgaatccatgcttctttgga 423
             |||||||||||||||||||||||
Sbjct: 29046 caatgaatccatgcttctttgga 29024

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>gb|AC010280.7| Homo sapiens chromosome 5 clone CTC-537E7, complete sequence
          Length = 133790

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 401   caatgaatccatgcttctttgga 423
             |||||||||||||||||||||||
Sbjct: 43669 caatgaatccatgcttctttgga 43691

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>gb|AC017093.3|AC017093 Homo sapiens BAC clone RP11-511G7 from 5, complete sequence
          Length = 203043

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 401   caatgaatccatgcttctttgga 423
             |||||||||||||||||||||||
Sbjct: 91407 caatgaatccatgcttctttgga 91385

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>gb|AC010157.12| Homo sapiens chromosome 10 clone RP11-202D18, complete sequence
          Length = 160310

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 77    gggattcatttgccttcttgaa 98
             ||||||||||||||||||||||
Sbjct: 91263 gggattcatttgccttcttgaa 91242

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>gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, complete sequence
          Length = 256158

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 427    gcagggacttcatgggaaggt 447
              |||||||||||||||||||||
Sbjct: 115193 gcagggacttcatgggaaggt 115173

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>gb|AY582740.1| Chlamydomonas reinhardtii Fe-hydrogenase assembly protein (HydG)
           mRNA, complete cds
          Length = 1704

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 443 aaggtgtacttggggtgctcg 463
           |||||||||||||||||||||
Sbjct: 695 aaggtgtacttggggtgctcg 675

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>ref|XM_451567.1| Kluyveromyces lactis NRRL Y-1140, KLLA0B00825g predicted mRNA
          Length = 1185

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 171 tgtaaatgggaacttgttgtt 191
           |||||||||||||||||||||
Sbjct: 360 tgtaaatgggaacttgttgtt 380

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>gb|AC129886.3| Atelerix albiventris clone LB4-234A16, complete sequence
          Length = 176448

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 248   cagttctagtgtttgagagtgcatc 272
             ||||||||| |||||||||||||||
Sbjct: 18472 cagttctagagtttgagagtgcatc 18448



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 248   cagttctagtgtttgagagtgcatc 272
             ||||||||| |||||||||||||||
Sbjct: 17254 cagttctagagtttgagagtgcatc 17278

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>emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL
             Y-1140 of Kluyveromyces lactis
          Length = 1320834

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 171   tgtaaatgggaacttgttgtt 191
             |||||||||||||||||||||
Sbjct: 64643 tgtaaatgggaacttgttgtt 64663

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>gb|AC159301.2| Mus musculus BAC clone RP23-213B1 from chromosome 13, complete sequence
          Length = 188633

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 271    tcatgcatatttcctagcttc 291
              |||||||||||||||||||||
Sbjct: 108420 tcatgcatatttcctagcttc 108440

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>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold
          Length = 2136267

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 248    cagttctagtgtttgagagtgcatc 272
              ||||||||| |||||||||||||||
Sbjct: 627744 cagttctagagtttgagagtgcatc 627720



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 248    cagttctagtgtttgagagtgcatc 272
              ||||||||| |||||||||||||||
Sbjct: 626526 cagttctagagtttgagagtgcatc 626550

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>gb|AC102545.9| Mus musculus chromosome 9, clone RP23-118J13, complete sequence
          Length = 241789

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     gccaagaaacacccatgact 64
              ||||||||||||||||||||
Sbjct: 212259 gccaagaaacacccatgact 212278

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>gb|AC007245.3| Homo sapiens BAC clone RP11-273L18 from 7, complete sequence
          Length = 133137

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     taggaagaaatttagccaag 50
              ||||||||||||||||||||
Sbjct: 108434 taggaagaaatttagccaag 108453

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>emb|CT025841.2| Medicago truncatula chromosome 5 clone mth2-131j21, COMPLETE SEQUENCE
          Length = 122251

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   ggttgtaaatgggaacttgt 187
             ||||||||||||||||||||
Sbjct: 48940 ggttgtaaatgggaacttgt 48921

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>gb|AC010099.10| Homo sapiens BAC clone RP11-420H19 from 7, complete sequence
          Length = 154836

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     gaaatttagccaagaaacac 56
              ||||||||||||||||||||
Sbjct: 123891 gaaatttagccaagaaacac 123872

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>emb|AL161517.2|ATCHRIV29 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 29
          Length = 199861

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     aagaaatttagccaagaaac 54
              ||||||||||||||||||||
Sbjct: 139883 aagaaatttagccaagaaac 139902

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>emb|AL049524.1|ATF7L13 Arabidopsis thaliana DNA chromosome 4, BAC clone  F7L13 (ESSA project)
          Length = 95076

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    aagaaatttagccaagaaac 54
             ||||||||||||||||||||
Sbjct: 79920 aagaaatttagccaagaaac 79939

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>gb|AY113188.1| Mastigamoeba balamuthi aldehyde-alcohol dehydrogenase E (aadhE1)
            gene, partial cds
          Length = 3207

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 209  atgcagctgccccctcgcgt 228
            ||||||||||||||||||||
Sbjct: 1719 atgcagctgccccctcgcgt 1738

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>gb|AC148763.14| Medicago truncatula clone mth2-29o24, complete sequence
          Length = 104879

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 556   gttggtgtcggtgtcgggtt 575
             ||||||||||||||||||||
Sbjct: 15867 gttggtgtcggtgtcgggtt 15886

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>emb|BX470154.5| Zebrafish DNA sequence from clone CH211-81N22, complete sequence
          Length = 158249

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 302    tcatactgcatgcagcacca 321
              ||||||||||||||||||||
Sbjct: 114572 tcatactgcatgcagcacca 114553

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>gb|AC093597.3| Homo sapiens BAC clone RP11-187O17 from 4, complete sequence
          Length = 17211

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 428   cagggacttcatgggaaggt 447
             ||||||||||||||||||||
Sbjct: 10827 cagggacttcatgggaaggt 10846

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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 133     gtcgcggccacgacgatgca 152
               ||||||||||||||||||||
Sbjct: 5059884 gtcgcggccacgacgatgca 5059903

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>gb|AC006112.4| Homo sapiens chromosome 16 clone RP11-472H7, complete sequence
          Length = 191158

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 3      agatagcatcaatnagaaaaatg 25
              ||||||||||||| |||||||||
Sbjct: 121798 agatagcatcaatgagaaaaatg 121820

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>gb|AF118222.1|F3H7 Arabidopsis thaliana BAC F3H7
          Length = 102216

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    aagaaatttagccaagaaac 54
             ||||||||||||||||||||
Sbjct: 66743 aagaaatttagccaagaaac 66724

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>gb|AF142686.1| Cyclolobium nutans maturase-like protein (matK) gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 2503

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 398 atccaatgaatccatgcttctttg 421
           ||||||||||||| ||||||||||
Sbjct: 678 atccaatgaatccctgcttctttg 701

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>gb|AC006120.1|AC006120 Homo sapiens chromosome 17, clone hRPK.346_K_10, complete sequence
          Length = 168753

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    taggaagaaatttagccaag 50
             ||||||||||||||||||||
Sbjct: 66335 taggaagaaatttagccaag 66354

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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 400     ccaatgaatccatgcttctt 419
               ||||||||||||||||||||
Sbjct: 2827485 ccaatgaatccatgcttctt 2827466

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>gb|AC155302.2| Mus musculus BAC clone RP24-227A11 from chromosome 13, complete
             sequence
          Length = 152447

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 96    gaagaccccagcttgggcag 115
             ||||||||||||||||||||
Sbjct: 61081 gaagaccccagcttgggcag 61062

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>gb|AC140392.3| Mus musculus BAC clone RP24-89F9 from chromosome 9, complete sequence
          Length = 225973

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    gccaagaaacacccatgact 64
             ||||||||||||||||||||
Sbjct: 26173 gccaagaaacacccatgact 26192


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,872,592
Number of Sequences: 3902068
Number of extensions: 4872592
Number of successful extensions: 80641
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80472
Number of HSP's gapped (non-prelim): 153
length of query: 678
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 655
effective length of database: 17,143,297,704
effective search space: 11228859996120
effective search space used: 11228859996120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result