ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags9j22 |
|---|---|
| Clone Library Name | barley_pub |
>NDUAC_ARATH (Q9M9M9) Probable NADH-ubiquinone oxidoreductase subunit B17.2 (EC| 1.6.5.3) (EC 1.6.99.3) (Complex I-B17.2) (CI-B17.2) Length = 159 Score = 230 bits (586), Expect = 4e-60 Identities = 100/137 (72%), Positives = 117/137 (85%) Frame = -2 Query: 614 RYARDEGYLKCLGDGNLLQTKIHNIGATLVGVDSFGNKYYEKLHDTQYGRHRWVEYAEKG 435 R R+EG+++CL DGNLLQTKIHNIGATLVGVD FGNKYY+KL DTQYGRHRWVEYA K Sbjct: 23 RMIREEGFMRCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQKLGDTQYGRHRWVEYASKD 82 Query: 434 RYNASQVPAEWHGWLHHITDSTGDKLLEEKTKKFIMEHRQNYTGQGDDLIYHSKGHALNP 255 RYNASQVPAEWHGWLH ITD TGD+LL K K++ +EH++N++G+GD IYHSKGH LNP Sbjct: 83 RYNASQVPAEWHGWLHFITDHTGDELLSLKPKRYGLEHKENFSGEGDAYIYHSKGHTLNP 142 Query: 254 GQRDWTRYQPWEPKKEE 204 GQ++WTRYQ W P K + Sbjct: 143 GQKNWTRYQSWVPTKTQ 159
>NDUAC_CAEEL (Q9N2W7) Probable NADH dehydrogenase [ubiquinone] 1 alpha| subcomplex subunit 12 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase 17.0 kDa subunit) Length = 146 Score = 77.8 bits (190), Expect = 3e-14 Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 2/108 (1%) Frame = -2 Query: 533 TLVGVDSFGNKYYEKLHDTQYGRHRWVEYAEKG--RYNASQVPAEWHGWLHHITDSTGDK 360 TLVG D+FGN+YYE + R+RWVE+ +K Y+A+QVP EWH WLHHITD Sbjct: 42 TLVGSDNFGNRYYEN-NAYFVPRNRWVEFPDKVWLDYDATQVPPEWHSWLHHITDD-APS 99 Query: 359 LLEEKTKKFIMEHRQNYTGQGDDLIYHSKGHALNPGQRDWTRYQPWEP 216 + T+ +++EH++N + IY K + P T+ Q W+P Sbjct: 100 VKPPPTQDWVLEHKENTS------IYADKKYV--PYSTTRTKIQGWQP 139
>NDUAC_HUMAN (Q9UI09) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit| 12 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase subunit B17.2) (Complex I-B17.2) (CI-B17.2) (CIB17.2) (13 kDa differentiation-associated protein) Length = 145 Score = 62.4 bits (150), Expect = 1e-09 Identities = 35/93 (37%), Positives = 45/93 (48%), Gaps = 7/93 (7%) Frame = -2 Query: 533 TLVGVDSFGNKYYEKLHDTQYGRHRWVEYAEKGR-------YNASQVPAEWHGWLHHITD 375 TLVG D +GNKYYE + +GRHRWV Y + + S VP EWH WLH +TD Sbjct: 37 TLVGEDKYGNKYYED-NKQFFGRHRWVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTD 95 Query: 374 STGDKLLEEKTKKFIMEHRQNYTGQGDDLIYHS 276 K H+ N TG + + +S Sbjct: 96 DPPTTKPLTARKFIWTNHKFNVTGTPEQYVPYS 128
>NDUAC_BOVIN (O97725) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit| 12 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase subunit B17.2) (Complex I-B17.2) (CI-B17.2) (CIB17.2) Length = 145 Score = 61.6 bits (148), Expect = 2e-09 Identities = 41/115 (35%), Positives = 56/115 (48%), Gaps = 8/115 (6%) Frame = -2 Query: 596 GYLKCLGDGNLLQTKIHNIGATLVGVDSFGNKYYEKLHDTQYGRHRWVEYAEKGR----- 432 GYL+ L N ++ TLVG D +GNKYYE + +GRHRWV Y + Sbjct: 22 GYLRVLFRANDVRV------GTLVGEDKYGNKYYED-NKQFFGRHRWVIYTTEMNGKNTF 74 Query: 431 --YNASQVPAEWHGWLHHITDSTGDKLLEEKTKKFI-MEHRQNYTGQGDDLIYHS 276 + S VP EWH WLH +TD + +KFI H+ N +G + +S Sbjct: 75 WDVDGSMVPPEWHRWLHCMTDDP-PTVKPPTARKFIWTNHKFNLSGTPQQYVPYS 128
>NDUAC_MOUSE (Q7TMF3) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit| 12 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase subunit B17.2) (Complex I-B17.2) (CI-B17.2) (CIB17.2) Length = 145 Score = 57.8 bits (138), Expect = 3e-08 Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 7/60 (11%) Frame = -2 Query: 533 TLVGVDSFGNKYYEKLHDTQYGRHRWVEYAEKGR-------YNASQVPAEWHGWLHHITD 375 TLVG D +GNKYYE + +GRHRWV Y + + S VP EWH WLH +TD Sbjct: 37 TLVGEDKYGNKYYED-NKQFFGRHRWVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTD 95
>Y725_RICPR (Q9ZCK4) Hypothetical protein RP725| Length = 100 Score = 41.2 bits (95), Expect = 0.003 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%) Frame = -2 Query: 533 TLVGVDSFGNKYYEKLHDTQY-GR-HRWVEYAEKGRYNASQVPAEWHGWLHHITD 375 T VG D F N+YYE ++ Y GR R V Y K ++++P W+ WLHH+ + Sbjct: 14 TKVGEDEFLNQYYESRNNIDYLGRSRRCVIY--KNINESTKIPPSWYSWLHHLVN 66
>MIMIT_HUMAN (Q8N183) Mimitin, mitochondrial precursor (Myc-induced| mitochondrial protein) (MMTN) (B17.2-like) (B17.2L) Length = 169 Score = 37.7 bits (86), Expect = 0.037 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 10/83 (12%) Frame = -2 Query: 527 VGVDSFGNKY-----YEKLHDTQYGRHRWVEYAEKGR--YNASQVPAEWHGWLHHI--TD 375 VG D FGNKY Y+ R VE A K Y A +P EW W+ T Sbjct: 23 VGTDQFGNKYYYIPQYKNWRGQTIREKRIVEAANKKEVDYEAGDIPTEWEAWIRRTRKTP 82 Query: 374 STGDKLLE-EKTKKFIMEHRQNY 309 T +++L+ EK ++ I Q++ Sbjct: 83 PTMEEILKNEKHREEIKIKSQDF 105
>MIMIT_MOUSE (Q59J78) Mimitin, mitochondrial precursor (Myc-induced| mitochondrial protein) (MMTN) Length = 168 Score = 33.9 bits (76), Expect = 0.54 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 10/83 (12%) Frame = -2 Query: 527 VGVDSFGNKYY-----EKLHDTQYGRHRWVEYAEKGR--YNASQVPAEWHGWLHHI--TD 375 VG D GNKYY + R VE A + Y A +P EW W+ T Sbjct: 23 VGTDHLGNKYYYVAEYKNWRGQTIREKRIVEAANRKEVDYEAGDIPTEWEAWIRRTRKTP 82 Query: 374 STGDKLLE-EKTKKFIMEHRQNY 309 T +++L+ EK ++ I Q++ Sbjct: 83 PTMEEILKNEKYREEIKIKSQDF 105
>HME2_HUMAN (P19622) Homeobox protein engrailed-2 (Hu-En-2)| Length = 333 Score = 32.0 bits (71), Expect = 2.1 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 6/55 (10%) Frame = -3 Query: 712 RGSGAGSEGIIHGR------GGSERVAGHQGEGPRQLPSATPATRDT*NALGMET 566 RG GAG EG G GGSE++ G PRQ P P A G ++ Sbjct: 96 RGGGAGGEGGASGAEGGGGAGGSEQLLGSGSREPRQNPPCAPGAGGPLPAAGSDS 150
>GLNA_TUBBO (Q86ZU6) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia| ligase) (GS) Length = 358 Score = 31.6 bits (70), Expect = 2.7 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 17/79 (21%) Frame = -2 Query: 476 QYGRHRWV----------EYAEKGRYNASQVPAEWHGWLHHITDST-------GDKLLEE 348 + G H W+ E+ K ++ +P +W+G H ST G K +EE Sbjct: 212 EMGDHLWISRYLLHRVAEEFGVKISFHPKPIPGDWNGSGLHTNVSTQAMRDEGGMKAIEE 271 Query: 347 KTKKFIMEHRQNYTGQGDD 291 +K H ++ GDD Sbjct: 272 AIQKLSTRHAEHIAVYGDD 290
>FBX42_PONPY (Q5RDA9) F-box only protein 42| Length = 717 Score = 30.4 bits (67), Expect = 6.0 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 6/26 (23%) Frame = -1 Query: 582 PWGWKPIANQNSQH-----WCNP-CR 523 PW W+P+ +N +H WC+P CR Sbjct: 321 PWAWQPLKVENEEHGAPELWCHPACR 346
>FBX42_HUMAN (Q6P3S6) F-box only protein 42| Length = 717 Score = 30.4 bits (67), Expect = 6.0 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 6/26 (23%) Frame = -1 Query: 582 PWGWKPIANQNSQH-----WCNP-CR 523 PW W+P+ +N +H WC+P CR Sbjct: 321 PWAWQPLKVENEEHGAPELWCHPACR 346
>HORN_HUMAN (Q86YZ3) Hornerin| Length = 2850 Score = 30.4 bits (67), Expect = 6.0 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -3 Query: 718 NQRGSGAGSEGIIHGRGGSERVAGHQGEGPRQLPSAT 608 +Q GSG+G +G + +GGS G G PS+T Sbjct: 2799 SQHGSGSGQDGYSYCKGGSNHDGGSSGSYFLSFPSST 2835
>L100_ADEG1 (Q64760) Late 100 kDa protein| Length = 984 Score = 30.4 bits (67), Expect = 6.0 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = -3 Query: 721 RNQRGSGAGSEGIIH-GRGGSERVAGHQGEGPRQLPSAT 608 RN R SG + GRGG V G QGE P PSA+ Sbjct: 921 RNTRQSGYNERANRYFGRGGGGSVRGQQGEHPTTSPSAS 959
>NAS3_CAEEL (Q21252) Zinc metalloproteinase nas-3 precursor (EC 3.4.24.21)| (Nematode astacin 3) Length = 292 Score = 30.0 bits (66), Expect = 7.8 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -1 Query: 663 RSVWQGIKEKGLANFLPLRPRRGIPKMPWGWK 568 RSV + K+ +A +P+R +RGI PW W+ Sbjct: 35 RSVSEPPKDDDIAVKIPMRKKRGIAIHPWQWE 66 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 116,741,261 Number of Sequences: 219361 Number of extensions: 2623834 Number of successful extensions: 7748 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 7252 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7728 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7706249192 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
