ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9j19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y2766_ARATH (O80934) Protein At2g37660, chloroplast precursor 164 3e-40
2Y5224_ARATH (Q94EG6) Protein At5g02240 157 3e-38
3OSBL5_MOUSE (Q9ER64) Oxysterol-binding protein-related protein 5... 31 4.1
4IFEA_HELAS (P22488) Non-neuronal cytoplasmic intermediate filame... 31 4.1
5OSBL5_HUMAN (Q9H0X9) Oxysterol-binding protein-related protein 5... 31 4.1
6PARM1_PONPY (Q5RAF8) Protein PARM-1 precursor 30 9.1
7PARM1_HUMAN (Q6UWI2) Protein PARM-1 precursor 30 9.1
8IGF1R_MOUSE (Q60751) Insulin-like growth factor 1 receptor precu... 30 9.1
9IGF1R_RAT (P24062) Insulin-like growth factor 1 receptor precurs... 30 9.1

>Y2766_ARATH (O80934) Protein At2g37660, chloroplast precursor|
          Length = 325

 Score =  164 bits (414), Expect = 3e-40
 Identities = 76/95 (80%), Positives = 88/95 (92%)
 Frame = -3

Query: 688 EQYLADSGVPYTIIRAGGLQDKDGGVRELIVGKDDEILKTETKTVARADVAEVCIQALLF 509
           EQYLADSG+PYTIIRAGGLQDKDGG+REL+VGKDDE+L+TET+T+ARADVAEVC+QAL  
Sbjct: 231 EQYLADSGIPYTIIRAGGLQDKDGGIRELLVGKDDELLETETRTIARADVAEVCVQALQL 290

Query: 508 EEAKFKAFDLASKPEGEGTPTTDFKSVFAQIATRF 404
           EEAKFKA DLASKPEG GTPT DFK++F Q+ T+F
Sbjct: 291 EEAKFKALDLASKPEGTGTPTKDFKALFTQVTTKF 325



to top

>Y5224_ARATH (Q94EG6) Protein At5g02240|
          Length = 253

 Score =  157 bits (397), Expect = 3e-38
 Identities = 76/95 (80%), Positives = 86/95 (90%)
 Frame = -3

Query: 688 EQYLADSGVPYTIIRAGGLQDKDGGVRELIVGKDDEILKTETKTVARADVAEVCIQALLF 509
           EQYLADSG PYTIIRAGGL DK+GGVREL+VGKDDE+L+T+TKTV RADVAEVCIQALLF
Sbjct: 159 EQYLADSGTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLF 218

Query: 508 EEAKFKAFDLASKPEGEGTPTTDFKSVFAQIATRF 404
           EEAK KAFDL SKPEG  TPT DFK++F+Q+ +RF
Sbjct: 219 EEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTSRF 253



to top

>OSBL5_MOUSE (Q9ER64) Oxysterol-binding protein-related protein 5 (OSBP-related|
           protein 5) (ORP-5) (Oxysterol-binding protein homolog 1)
          Length = 874

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 69  TVSLHVWHVARRRINREDNCCNLDHPVSQSPWL*LGTKG 185
           TV LH   +  R   ++  C  L HP+ QS W   G KG
Sbjct: 168 TVLLHCCELIERPSKKDGFCFKLFHPLDQSVWAVKGPKG 206



to top

>IFEA_HELAS (P22488) Non-neuronal cytoplasmic intermediate filament protein|
           (IF)
          Length = 575

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -3

Query: 649 IRAGGLQDKDGGVRELI--VGKDDEILKTETKTVARADVAEVCIQALLFEEAKF 494
           IR G L+D++  VREL+  + + +  L+ +  T   A +   C+     EEA+F
Sbjct: 194 IRCGSLEDENAKVRELLDKIQEQNRRLRADLDTETAAHIEADCLAQTKTEEAEF 247



to top

>OSBL5_HUMAN (Q9H0X9) Oxysterol-binding protein-related protein 5 (OSBP-related|
           protein 5) (ORP-5)
          Length = 879

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 69  TVSLHVWHVARRRINREDNCCNLDHPVSQSPWL*LGTKG 185
           TV LH   +  R   ++  C  L HP+ QS W   G KG
Sbjct: 168 TVLLHCCELIERPSKKDGFCFKLFHPLDQSVWAVKGPKG 206



to top

>PARM1_PONPY (Q5RAF8) Protein PARM-1 precursor|
          Length = 310

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = +3

Query: 456 PSPSGFEARSNALNFASSNSKACMQTSATSALATXXXXXXX-XXXXXPTINSRTPPSLSC 632
           PSP GF + S  ++  ++  +  + T      AT             P   + +P SLS 
Sbjct: 104 PSPPGFSSTSGGVHLTTTLEEHSLGTPEAGVAATLSQSAAEPPTLISPQAPASSPSSLST 163

Query: 633 SPPALIIV 656
           SPP +  V
Sbjct: 164 SPPEVFSV 171



to top

>PARM1_HUMAN (Q6UWI2) Protein PARM-1 precursor|
          Length = 310

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = +3

Query: 456 PSPSGFEARSNALNFASSNSKACMQTSATSALATXXXXXXX-XXXXXPTINSRTPPSLSC 632
           PSPSGF + S  ++  ++  +    T      AT             P   + +P SLS 
Sbjct: 104 PSPSGFSSTSGGVHLTTTLEEHSSGTPEAGVAATLSQSAAEPPTLISPQAPASSPSSLST 163

Query: 633 SPP 641
           SPP
Sbjct: 164 SPP 166



to top

>IGF1R_MOUSE (Q60751) Insulin-like growth factor 1 receptor precursor (EC|
           2.7.10.1) (Insulin-like growth factor I receptor) (IGF-I
           receptor) [Contains: Insulin-like growth factor 1
           receptor alpha chain; Insulin-like growth factor 1
           receptor beta chain]
          Length = 1373

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -2

Query: 656 HNYKSWRTTRQRWWCA*VDCWKGRRDLED*NKNCCQGRCCRSLHT 522
           +NY+ W T R +  C  V C  G+R   + N  CC   C  S HT
Sbjct: 201 YNYRCWTTNRCQKMCPSV-C--GKRACTE-NNECCHPECLGSCHT 241



to top

>IGF1R_RAT (P24062) Insulin-like growth factor 1 receptor precursor (EC|
           2.7.10.1) (Insulin-like growth factor I receptor) (IGF-I
           receptor) [Contains: Insulin-like growth factor 1
           receptor alpha chain; Insulin-like growth factor 1
           receptor beta chain]
          Length = 1370

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -2

Query: 656 HNYKSWRTTRQRWWCA*VDCWKGRRDLED*NKNCCQGRCCRSLHT 522
           +NY+ W T R +  C  V C  G+R   + N  CC   C  S HT
Sbjct: 201 YNYRCWTTNRCQKMCPSV-C--GKRACTE-NNECCHPECLGSCHT 241


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,546,999
Number of Sequences: 219361
Number of extensions: 1785580
Number of successful extensions: 4691
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4690
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6882837918
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top