ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags9j09 |
|---|---|
| Clone Library Name | barley_pub |
>YAJ6_SCHPO (Q09906) Hypothetical UPF0206 protein C30D11.06c in chromosome I| Length = 426 Score = 60.8 bits (146), Expect = 3e-09 Identities = 31/94 (32%), Positives = 53/94 (56%) Frame = -2 Query: 636 SMALYALVIFYHLFAKELAPHKPLAKFLCIKGIVFFSFWQGCALDVLAAVGVIQSHHFWL 457 +++LY+L F+ +ELAP +P KFL +K I+F S+WQ L + +G++ + Sbjct: 181 TLSLYSLTTFWVCLHEELAPFRPFPKFLSVKAIIFASYWQQTVLSITNWLGLLNGTGWIY 240 Query: 456 DVEHIQEAIQNVLIILEMVIFSVLQQYAYHVAPY 355 + + QNVL+ LEM F++ YA+ + Y Sbjct: 241 SLLN-----QNVLMCLEMPFFALSHWYAFRIEDY 269
>CV005_HUMAN (Q9Y519) Putative MAP kinase-activating protein C22orf5 (Putative| MAPK-activating protein FM08) Length = 407 Score = 59.7 bits (143), Expect = 7e-09 Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 3/102 (2%) Frame = -2 Query: 636 SMALYALVIFYHLFAKELAPHKPLAKFLCIKGIVFFSFWQGCALDVLAAVGVIQSHH--- 466 S+ALYAL +FY + L+P+ P+ KF +K ++F SFWQG L +L G I H Sbjct: 223 SLALYALFLFYFATRELLSPYSPVLKFFMVKSVIFLSFWQGMLLAILEKCGAIPKIHSAR 282 Query: 465 FWLDVEHIQEAIQNVLIILEMVIFSVLQQYAYHVAPYSGADK 340 + + Q+ +I +EM ++ ++A+ Y ADK Sbjct: 283 VSVGEGTVAAGYQDFIICVEMFFAALALRHAFTYKVY--ADK 322
>CV005_MOUSE (Q8BG09) Putative MAP kinase-activating protein C22orf5 homolog| Length = 407 Score = 58.9 bits (141), Expect = 1e-08 Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 3/102 (2%) Frame = -2 Query: 636 SMALYALVIFYHLFAKELAPHKPLAKFLCIKGIVFFSFWQGCALDVL---AAVGVIQSHH 466 S+ALYAL +FY + L+P+ P+ KF +K ++F SFWQG L +L A+ I S Sbjct: 223 SLALYALFLFYFATRELLSPYSPVLKFFMVKSVIFLSFWQGMLLAILEKCGAIPKINSAR 282 Query: 465 FWLDVEHIQEAIQNVLIILEMVIFSVLQQYAYHVAPYSGADK 340 + + Q+ +I +EM ++ ++A+ Y ADK Sbjct: 283 VSVGEGTVAAGYQDFIICVEMFFAALALRHAFTYKVY--ADK 322
>YK31_YEAST (P36142) Hypothetical UPF0206 protein YKR051w| Length = 418 Score = 55.8 bits (133), Expect = 1e-07 Identities = 29/87 (33%), Positives = 49/87 (56%) Frame = -2 Query: 630 ALYALVIFYHLFAKELAPHKPLAKFLCIKGIVFFSFWQGCALDVLAAVGVIQSHHFWLDV 451 +LY+L +F+ EL P+KP KFLC+K I+F S+WQ + L G + + + Sbjct: 182 SLYSLALFWKCLYPELTPYKPWLKFLCVKLIIFASYWQSIIIQGLVVTGKLGTGNQDRTS 241 Query: 450 EHIQEAIQNVLIILEMVIFSVLQQYAY 370 ++ +N L+ +EMV F++L A+ Sbjct: 242 GYV---YKNGLLCIEMVPFAILHAVAF 265
>COX3_DROYA (P00418) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 262 Score = 38.9 bits (89), Expect = 0.013 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 4/102 (3%) Frame = -2 Query: 636 SMALYALVIFYHLFAKELAPHKPLAKFLCIKGIVFFSFWQ----GCALDVLAAVGVIQSH 469 S L+ + F+ F L+P L GI+ F+ +Q A+ + + V V +H Sbjct: 90 SEVLFFVSFFWAFFHSSLSPAIELGASWPPMGIISFNPFQIPLLNTAILLASGVTVTWAH 149 Query: 468 HFWLDVEHIQEAIQNVLIILEMVIFSVLQQYAYHVAPYSGAD 343 H ++ H Q +L + F++LQ Y Y AP++ AD Sbjct: 150 HSLMESNHSQTTQGLFFTVLLGIYFTILQAYEYIEAPFTIAD 191
>COX3_DROME (P00417) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 262 Score = 38.5 bits (88), Expect = 0.017 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 4/102 (3%) Frame = -2 Query: 636 SMALYALVIFYHLFAKELAPHKPLAKFLCIKGIVFFSFWQ----GCALDVLAAVGVIQSH 469 S L+ + F+ F L+P L GI+ F+ +Q A+ + + V V +H Sbjct: 90 SEVLFFVSFFWAFFHSSLSPAIELGASWPPMGIISFNPFQIPLLNTAILLASGVTVTWAH 149 Query: 468 HFWLDVEHIQEAIQNVLIILEMVIFSVLQQYAYHVAPYSGAD 343 H ++ H Q +L + F++LQ Y Y AP++ AD Sbjct: 150 HSLMENNHSQTTQGLFFTVLLGIYFTILQAYEYIEAPFTIAD 191
>COX3_ANOQU (P33508) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 262 Score = 37.4 bits (85), Expect = 0.038 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 4/102 (3%) Frame = -2 Query: 636 SMALYALVIFYHLFAKELAPHKPLAKFLCIKGIVFFSFWQ----GCALDVLAAVGVIQSH 469 S + + F+ F L+P L GI+ F+ +Q A+ + + V V +H Sbjct: 90 SEIFFFISFFWAFFHSSLSPTIELGMTWPPVGIIAFNPFQIPLLNTAILLASGVTVTWAH 149 Query: 468 HFWLDVEHIQEAIQNVLIILEMVIFSVLQQYAYHVAPYSGAD 343 H ++ H Q I+ + FS+LQ Y Y AP++ AD Sbjct: 150 HALMESNHSQATQGLFFTIVLGIYFSILQAYEYIEAPFTIAD 191
>COX3_ANOGA (P34842) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 262 Score = 35.4 bits (80), Expect = 0.14 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 4/102 (3%) Frame = -2 Query: 636 SMALYALVIFYHLFAKELAPHKPLAKFLCIKGIVFFSFWQ----GCALDVLAAVGVIQSH 469 S + + F+ F L+P L GI F+ +Q A+ + + V V +H Sbjct: 90 SEVFFFISFFWAFFHSSLSPTIELGMTWPPVGIAAFNPFQIPLLNTAILLASGVTVTWAH 149 Query: 468 HFWLDVEHIQEAIQNVLIILEMVIFSVLQQYAYHVAPYSGAD 343 H ++ H Q I+ V F++LQ Y Y AP++ AD Sbjct: 150 HALMEGNHSQATQGLFFTIVLGVYFTILQAYEYIEAPFTIAD 191
>COX3_CHOCR (P48872) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 272 Score = 32.7 bits (73), Expect = 0.93 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 4/102 (3%) Frame = -2 Query: 636 SMALYALVIFYHLFAKELAPHKPLAKFLCIKGIVFFSFWQGCALD----VLAAVGVIQSH 469 S L+ F+ F LAP + KGI + W+ L+ +L+ V H Sbjct: 99 SEILFFFAFFWAFFHSSLAPTIEIGSIWPPKGINVLNPWEIPFLNTLILLLSGCTVTWCH 158 Query: 468 HFWLDVEHIQEAIQNVLIILEMVIFSVLQQYAYHVAPYSGAD 343 H + Q + L I+ ++F+ Q Y Y +A + +D Sbjct: 159 HSLVSNLRNQSVLSLFLTIVLAIVFTTFQAYEYSMADFRLSD 200
>COX3_CYACA (P48873) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 270 Score = 32.7 bits (73), Expect = 0.93 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 4/104 (3%) Frame = -2 Query: 636 SMALYALVIFYHLFAKELAPHKPLAKFLCIKGIVFFSFWQGCALD----VLAAVGVIQSH 469 S + + F+ F L P KGI FFS W L+ +L+ V SH Sbjct: 97 SEVILFIAFFWAFFHNSLIPALETGVVWPPKGIQFFSPWDIPFLNTIILLLSGCAVTWSH 156 Query: 468 HFWLDVEHIQEAIQNVLIILEMVIFSVLQQYAYHVAPYSGADKA 337 + + Q +L I +IF++ Q Y Y +A + +D A Sbjct: 157 NCIISGFRRQAIFSLILTIGLALIFTIFQIYEYAIASFHLSDGA 200
>TRIB2_HUMAN (Q92519) Tribbles homolog 2 (TRB-2)| Length = 343 Score = 32.0 bits (71), Expect = 1.6 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +2 Query: 272 QEPAADVAWHEALDHSFFFTDFALSAPLYGA 364 +EP+ + E LDH +F TDF++S YGA Sbjct: 291 REPSERLTSQEILDHPWFSTDFSVSNSAYGA 321
>COX3_PROWI (Q37620) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 262 Score = 32.0 bits (71), Expect = 1.6 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 4/102 (3%) Frame = -2 Query: 636 SMALYALVIFYHLFAKELAPHKPLAKFLCIKGIVFFSFWQGCALDVL----AAVGVIQSH 469 S ++ F+ F LAP + KGI + W+ L+ + + V +H Sbjct: 89 SEIMFFFAFFWAFFHSSLAPTIEIGAVWPPKGIQVLNPWEIPFLNTIILLTSGASVTWAH 148 Query: 468 HFWLDVEHIQEAIQNVLIILEMVIFSVLQQYAYHVAPYSGAD 343 H L Q I + +L VIF+ Q Y AP++ +D Sbjct: 149 HAILAGNRKQGIISLAITVLLAVIFTGFQALEYLEAPFTISD 190
>DNAE2_RALSO (Q8XRN1) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1075 Score = 32.0 bits (71), Expect = 1.6 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -1 Query: 487 RGDSVSPFLAGRGAHPGGNPECLDYPG 407 +G V P+L R A GNP+C+ YPG Sbjct: 645 QGGMVHPYLQRREAVRNGNPDCVTYPG 671
>UCHL1_HORSE (Q9GM50) Ubiquitin carboxyl-terminal hydrolase isozyme L1 (EC| 3.4.19.12) (EC 6.-.-.-) (UCH-L1) (Ubiquitin thioesterase L1) (Neuron cytoplasmic protein 9.5) (PGP 9.5) (PGP9.5) Length = 223 Score = 32.0 bits (71), Expect = 1.6 Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 9/98 (9%) Frame = -2 Query: 435 AIQNVLIILEMVIFSVLQQYAYHVAPYSGADKAKSVKKNE*SRASCQATSAAGSCMV--- 265 A+ N LE SVL+Q+ S D+AK +KNE +A+ A + G C V Sbjct: 98 AVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDK 157 Query: 264 ---LCVCAGSIDSRCYR---TCAFPCGHV*SESSLYLE 169 + ++D Y FP H S L L+ Sbjct: 158 VNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDLLLQ 195
>COX3_LOCMI (P14574) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 263 Score = 32.0 bits (71), Expect = 1.6 Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 5/103 (4%) Frame = -2 Query: 636 SMALYALVIFYHLFAKELAPHKPLAKFLCIKGIVFFSFWQ----GCALDVLAAVGVIQSH 469 S L+ F+ F LAP L GI F+ Q A+ + + V + +H Sbjct: 91 SEVLFFASFFWAFFNSSLAPTIELGMKWPPMGIQPFNPIQIPLLNTAILLASGVTITWAH 150 Query: 468 HFWLDVEHIQEAIQNVLIILEM-VIFSVLQQYAYHVAPYSGAD 343 H ++ H Q A+Q + + + F++LQ Y Y AP++ AD Sbjct: 151 HSIMECNHSQ-ALQGLFFTVMLGFYFTLLQMYEYWEAPFTIAD 192
>TRIB2_PONPY (Q5R669) Tribbles homolog 2 (TRB-2)| Length = 343 Score = 30.8 bits (68), Expect = 3.5 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +2 Query: 272 QEPAADVAWHEALDHSFFFTDFALSAPLYGA 364 +EP+ + E LDH +F TDF++S YGA Sbjct: 291 REPSERLTSQEILDHPWFSTDFSVSNSGYGA 321
>TRIB2_CANFA (Q28283) Tribbles homolog 2 (TRB-2)| Length = 343 Score = 30.8 bits (68), Expect = 3.5 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +2 Query: 272 QEPAADVAWHEALDHSFFFTDFALSAPLYGA 364 +EP+ + E LDH +F TDF++S YGA Sbjct: 291 REPSERLTSQEILDHPWFSTDFSVSNSGYGA 321
>TRIB2_BOVIN (Q5GLH2) Tribbles homolog 2 (TRB-2)| Length = 343 Score = 30.8 bits (68), Expect = 3.5 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +2 Query: 272 QEPAADVAWHEALDHSFFFTDFALSAPLYGA 364 +EP+ + E LDH +F TDF++S YGA Sbjct: 291 REPSERLTSQEILDHPWFSTDFSVSNSGYGA 321
>COX3_PODAN (Q02654) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 269 Score = 30.8 bits (68), Expect = 3.5 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 4/104 (3%) Frame = -2 Query: 636 SMALYALVIFYHLFAKELAPHKPLAKFLCIKGIVFFSFWQGCALDVLAAVG----VIQSH 469 S AL+ L IF+ F L P L GI + ++ L+ + + V +H Sbjct: 97 SEALFFLAIFWAFFHSSLTPTVELGSQWPPIGIEPINPFELPLLNTVILLSSGATVTYAH 156 Query: 468 HFWLDVEHIQEAIQNVLIILEMVIFSVLQQYAYHVAPYSGADKA 337 H + E +++ IL +IF+V Q Y+V+ ++ +D A Sbjct: 157 HSLIHGERKGALYGSIITILLAIIFTVFQGVEYNVSSFTISDGA 200
>UCHL1_PIG (Q6SEG5) Ubiquitin carboxyl-terminal hydrolase isozyme L1 (EC| 3.4.19.12) (EC 6.-.-.-) (UCH-L1) (Ubiquitin thioesterase L1) Length = 223 Score = 30.8 bits (68), Expect = 3.5 Identities = 20/57 (35%), Positives = 28/57 (49%) Frame = -2 Query: 435 AIQNVLIILEMVIFSVLQQYAYHVAPYSGADKAKSVKKNE*SRASCQATSAAGSCMV 265 A+ N LE SVL+Q+ S D+AK +KNE +A+ A + G C V Sbjct: 98 AVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDAVAQEGQCRV 154
>COX3_WHEAT (P15953) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 265 Score = 30.8 bits (68), Expect = 3.5 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 4/102 (3%) Frame = -2 Query: 636 SMALYALVIFYHLFAKELAPHKPLAKFLCIKGIVFFSFWQGCALDVL----AAVGVIQSH 469 S ++ F+ F LAP + KGI W+ L+ L + V +H Sbjct: 92 SEVMFFFAFFWAFFHSSLAPTVEIGGIWPPKGIGVLDPWEIPLLNTLILLSSGAAVTWAH 151 Query: 468 HFWLDVEHIQEAIQNVLIILEMVIFSVLQQYAYHVAPYSGAD 343 H L + + V +L ++F+ Q Y+ AP++ +D Sbjct: 152 HAILAGKEKRAVYALVATVLLALVFTGFQGMEYYQAPFTISD 193
>COX3_ARATH (P92514) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 265 Score = 30.8 bits (68), Expect = 3.5 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 4/102 (3%) Frame = -2 Query: 636 SMALYALVIFYHLFAKELAPHKPLAKFLCIKGIVFFSFWQGCALDVL----AAVGVIQSH 469 S ++ F+ F LAP + KGI W+ L+ L + V +H Sbjct: 92 SEVMFFFAFFWAFFHSSLAPAVEIGGIWPPKGIEVLDPWEIPFLNTLILLSSGAAVTWAH 151 Query: 468 HFWLDVEHIQEAIQNVLIILEMVIFSVLQQYAYHVAPYSGAD 343 H L + + V +L ++F+ Q Y+ AP++ +D Sbjct: 152 HAILAGKEKRAVYALVATVLLALVFTGFQGMEYYQAPFTISD 193
>ISPE_XYLFT (Q87A21) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC| 2.7.1.148) (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) Length = 298 Score = 30.4 bits (67), Expect = 4.6 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 3/46 (6%) Frame = -1 Query: 484 GDSVSPFLAGRGAHPGGNPECLD---YPGNGHLLGTPAVCVPCRSV 356 G V F+ G A G ECL PG +LL P VCVP R + Sbjct: 149 GADVPVFVHGCNAWAEGVGECLTPMILPGAAYLLLDPGVCVPTREL 194
>ISPE_XYLFA (Q9PA75) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC| 2.7.1.148) (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) Length = 298 Score = 30.4 bits (67), Expect = 4.6 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 3/46 (6%) Frame = -1 Query: 484 GDSVSPFLAGRGAHPGGNPECLD---YPGNGHLLGTPAVCVPCRSV 356 G V F+ G A G ECL PG +LL P VCVP R + Sbjct: 149 GADVPVFVHGCNAWAEGVGECLTPMILPGAAYLLLDPGVCVPTREL 194
>ZN546_HUMAN (Q86UE3) Zinc finger protein 546| Length = 836 Score = 30.4 bits (67), Expect = 4.6 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 2/83 (2%) Frame = +3 Query: 150 SCRFSSVQGITTTHSTRVHKEMHMSYNILNQYSQH--IHTKPYKNQLQMSLGTKPWIIRS 323 S +F S Q I T+ ST + KE ++ +QH IHT G KP+I Sbjct: 565 SNQFISHQRIHTSESTYICKECGKIFSRRYNLTQHFKIHT-----------GEKPYICNE 613 Query: 324 SSQISPCQRRCTERHGTHTAGVP 392 + Q T+ H HT P Sbjct: 614 CGKAFRFQTELTQHHRIHTGEKP 636
>COX3_TETNG (Q4JQI1) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 261 Score = 30.4 bits (67), Expect = 4.6 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 4/102 (3%) Frame = -2 Query: 636 SMALYALVIFYHLFAKELAPHKPLAKFLCIKGIVFFSFWQ----GCALDVLAAVGVIQSH 469 S + L F+ + LAP L GIV + ++ A+ + + V V +H Sbjct: 89 SEVFFFLGFFWAFYHSSLAPTPELGGCWPPTGIVPLNPFEVPLLNTAVLLASGVTVTWAH 148 Query: 468 HFWLDVEHIQEAIQNVLIILEMVIFSVLQQYAYHVAPYSGAD 343 H ++ E Q L IL F+ LQ Y+ AP++ AD Sbjct: 149 HSIMEGERKQAIHSLTLTILLGFYFTFLQAMEYYEAPFTIAD 190
>RNBP6_HUMAN (O60518) Ran-binding protein 6 (RanBP6)| Length = 1105 Score = 30.0 bits (66), Expect = 6.0 Identities = 18/82 (21%), Positives = 39/82 (47%) Frame = +1 Query: 262 QNHTRTSCRCRLARSPGSFVLLHRFRLVSAAVRSDMVRILLEYREDDHFQDNQDILDCLL 441 Q+ + R AR+ +FVL + + +D++ +L+ D +QD+ +L+ L+ Sbjct: 190 QDQEHPAIRTLSARAAAAFVLANENNIALFKDFADLLPGILQAVNDSCYQDDDSVLESLV 249 Query: 442 DVLHVQPEMVRLNHPYSSQNIQ 507 ++ P+ + PY +Q Sbjct: 250 EIADTVPKYL---GPYLEDTLQ 268
>COX3_BRARE (Q9MIY4) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 261 Score = 30.0 bits (66), Expect = 6.0 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 4/102 (3%) Frame = -2 Query: 636 SMALYALVIFYHLFAKELAPHKPLAKFLCIKGIVFFSFWQ----GCALDVLAAVGVIQSH 469 S + L F+ + LAP L G+ ++ A+ + + V V +H Sbjct: 89 SEVFFFLGFFWAFYHSSLAPTPELGGCWPPTGLTTLDPFEVPLLNTAVLLASGVTVTWAH 148 Query: 468 HFWLDVEHIQEAIQNVLIILEMVIFSVLQQYAYHVAPYSGAD 343 H ++ E Q L IL + F+ LQ Y+ AP++ AD Sbjct: 149 HSLMEGERKQAIQSLALTILLGLYFTALQAMEYYEAPFTIAD 190
>UCHL1_MACFA (Q60HC8) Ubiquitin carboxyl-terminal hydrolase isozyme L1 (EC| 3.4.19.12) (EC 6.-.-.-) (UCH-L1) (Ubiquitin thioesterase L1) Length = 223 Score = 30.0 bits (66), Expect = 6.0 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -2 Query: 393 SVLQQYAYHVAPYSGADKAKSVKKNE*SRASCQATSAAGSCMV 265 SVL+Q+ S D+AK +KNE +A+ A + G C V Sbjct: 112 SVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRV 154
>UCHL1_HUMAN (P09936) Ubiquitin carboxyl-terminal hydrolase isozyme L1 (EC| 3.4.19.12) (EC 6.-.-.-) (UCH-L1) (Ubiquitin thioesterase L1) (Neuron cytoplasmic protein 9.5) (PGP 9.5) (PGP9.5) Length = 223 Score = 30.0 bits (66), Expect = 6.0 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -2 Query: 393 SVLQQYAYHVAPYSGADKAKSVKKNE*SRASCQATSAAGSCMV 265 SVL+Q+ S D+AK +KNE +A+ A + G C V Sbjct: 112 SVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRV 154
>PCLO_CHICK (Q9PU36) Protein piccolo (Aczonin) (Fragment)| Length = 5120 Score = 30.0 bits (66), Expect = 6.0 Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 1/123 (0%) Frame = +3 Query: 267 PYKNQLQMSLGTKPWIIRSSSQISPCQRRCTERHGTHTAGVPRR*PFPG*SRHSG-LPPG 443 P K+QLQ S TKP ++S++ S T +P++ P ++ S PP Sbjct: 188 PQKSQLQQSEPTKPGQQQTSAKTS----------AGPTKPLPQQ---PDSAKTSSQAPPP 234 Query: 444 CAPRPARNGETESPLQQPKHPAHSPARKRRRQSL*CTRTSQEACEVPTPWQTSDRK*PRH 623 P ++G + P QQP P + +Q+ Q E PT QT K P Sbjct: 235 TKPSLQQSGSVKQPSQQPARQG-GPVKPSAQQA--GPPKQQPGSEKPTAQQTGPAKQPPQ 291 Query: 624 TVP 632 P Sbjct: 292 PGP 294
>COX3_SPOFR (Q35826) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) (Fragment) Length = 147 Score = 29.6 bits (65), Expect = 7.9 Identities = 15/53 (28%), Positives = 28/53 (52%) Frame = -2 Query: 501 VLAAVGVIQSHHFWLDVEHIQEAIQNVLIILEMVIFSVLQQYAYHVAPYSGAD 343 + + V V +HH ++ + Q + I+ + F++LQ Y Y AP++ AD Sbjct: 24 ISSGVSVTWAHHAIMENNNSQMTQGLFITIILGIYFTILQAYEYFEAPFTIAD 76
>COX3_CYPCA (P15952) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 261 Score = 29.6 bits (65), Expect = 7.9 Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 4/102 (3%) Frame = -2 Query: 636 SMALYALVIFYHLFAKELAPHKPLAKFLCIKGIVFFSFWQ----GCALDVLAAVGVIQSH 469 S + L F+ + LAP L GI ++ A+ + + V V +H Sbjct: 89 SEVFFFLGFFWAFYHSSLAPTPELGGCWPPTGITPLDPFEVPLLNTAVLLASGVTVTWAH 148 Query: 468 HFWLDVEHIQEAIQNVLIILEMVIFSVLQQYAYHVAPYSGAD 343 H ++ E Q L IL + F+ LQ Y+ AP++ AD Sbjct: 149 HSIMEGERKQAIQSLALTILLGLYFTALQAMEYYEAPFTIAD 190
>UCHL1_RAT (Q00981) Ubiquitin carboxyl-terminal hydrolase isozyme L1 (EC| 3.4.19.12) (EC 6.-.-.-) (UCH-L1) (Ubiquitin thioesterase L1) (Neuron cytoplasmic protein 9.5) (PGP 9.5) (PGP9.5) Length = 223 Score = 29.6 bits (65), Expect = 7.9 Identities = 19/57 (33%), Positives = 28/57 (49%) Frame = -2 Query: 435 AIQNVLIILEMVIFSVLQQYAYHVAPYSGADKAKSVKKNE*SRASCQATSAAGSCMV 265 A+ N LE SVL+Q+ S D+AK +KNE +A+ + + G C V Sbjct: 98 AVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDSVAQEGQCRV 154
>UCHL1_MOUSE (Q9R0P9) Ubiquitin carboxyl-terminal hydrolase isozyme L1 (EC| 3.4.19.12) (EC 6.-.-.-) (UCH-L1) (Ubiquitin thioesterase L1) (Neuron cytoplasmic protein 9.5) (PGP 9.5) (PGP9.5) Length = 223 Score = 29.6 bits (65), Expect = 7.9 Identities = 19/57 (33%), Positives = 28/57 (49%) Frame = -2 Query: 435 AIQNVLIILEMVIFSVLQQYAYHVAPYSGADKAKSVKKNE*SRASCQATSAAGSCMV 265 A+ N LE SVL+Q+ S D+AK +KNE +A+ + + G C V Sbjct: 98 AVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDSVAQEGQCRV 154 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,928,877 Number of Sequences: 219361 Number of extensions: 2248243 Number of successful extensions: 7225 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 6826 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7212 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5938641176 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
