Clone Name | rbags9j09 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_478301.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1267 Score = 307 bits (155), Expect = 2e-80 Identities = 272/311 (87%) Strand = Plus / Minus Query: 307 cctggatcattcgttcttcttcacagatttcgccttgtcagcgccgctgtacggagcgac 366 |||||||||||| ||||||||| | |||||||| ||||||| |||||||| ||||| || Sbjct: 1002 cctggatcattcattcttcttctcgaatttcgccctgtcagccccgctgtatggagcaac 943 Query: 367 atggtacgcatactgctggagtaccgagaagatgaccatttccaggataatcaagacatt 426 |||||| ||||| || ||||| || ||||||| ||||||||| | ||| | ||||||||| Sbjct: 942 atggtaagcatattgttggagaacggagaagaagaccatttcgatgatcaccaagacatt 883 Query: 427 ctggattgcctcctggatgtgctccacgtccagccagaaatggtgagactgaatcacccc 486 |||||||||||||||||||||||||||||||| |||||||||||| |||||||| | ||| Sbjct: 882 ctggattgcctcctggatgtgctccacgtccaaccagaaatggtgggactgaatgatccc 823 Query: 487 tacagcagccaaaacatccagcgcacagccctgccagaaagagaagaagacaatcccttt 546 ||| ||||| ||||| || | ||| | |||||||||||||||||||||||||||||||| Sbjct: 822 tacggcagctaaaacctctaatgcaaaaccctgccagaaagagaagaagacaatcccttt 763 Query: 547 gatgcacaagaacttcgcaagaggcttgtgaggtgccaactccttggcaaacaagtgata 606 |||||| ||||| || |||||||| ||||||||||||| ||| || ||||||||||| || Sbjct: 762 gatgcataagaattttgcaagaggtttgtgaggtgccagctcttttgcaaacaagtggta 703 Query: 607 gaaaatgacca 617 |||||| |||| Sbjct: 702 gaaaataacca 692
>ref|XM_507365.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0062D12.107 mRNA Length = 1292 Score = 307 bits (155), Expect = 2e-80 Identities = 272/311 (87%) Strand = Plus / Minus Query: 307 cctggatcattcgttcttcttcacagatttcgccttgtcagcgccgctgtacggagcgac 366 |||||||||||| ||||||||| | |||||||| ||||||| |||||||| ||||| || Sbjct: 1027 cctggatcattcattcttcttctcgaatttcgccctgtcagccccgctgtatggagcaac 968 Query: 367 atggtacgcatactgctggagtaccgagaagatgaccatttccaggataatcaagacatt 426 |||||| ||||| || ||||| || ||||||| ||||||||| | ||| | ||||||||| Sbjct: 967 atggtaagcatattgttggagaacggagaagaagaccatttcgatgatcaccaagacatt 908 Query: 427 ctggattgcctcctggatgtgctccacgtccagccagaaatggtgagactgaatcacccc 486 |||||||||||||||||||||||||||||||| |||||||||||| |||||||| | ||| Sbjct: 907 ctggattgcctcctggatgtgctccacgtccaaccagaaatggtgggactgaatgatccc 848 Query: 487 tacagcagccaaaacatccagcgcacagccctgccagaaagagaagaagacaatcccttt 546 ||| ||||| ||||| || | ||| | |||||||||||||||||||||||||||||||| Sbjct: 847 tacggcagctaaaacctctaatgcaaaaccctgccagaaagagaagaagacaatcccttt 788 Query: 547 gatgcacaagaacttcgcaagaggcttgtgaggtgccaactccttggcaaacaagtgata 606 |||||| ||||| || |||||||| ||||||||||||| ||| || ||||||||||| || Sbjct: 787 gatgcataagaattttgcaagaggtttgtgaggtgccagctcttttgcaaacaagtggta 728 Query: 607 gaaaatgacca 617 |||||| |||| Sbjct: 727 gaaaataacca 717
>ref|XM_506358.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0062D12.107 mRNA Length = 1292 Score = 307 bits (155), Expect = 2e-80 Identities = 272/311 (87%) Strand = Plus / Minus Query: 307 cctggatcattcgttcttcttcacagatttcgccttgtcagcgccgctgtacggagcgac 366 |||||||||||| ||||||||| | |||||||| ||||||| |||||||| ||||| || Sbjct: 1027 cctggatcattcattcttcttctcgaatttcgccctgtcagccccgctgtatggagcaac 968 Query: 367 atggtacgcatactgctggagtaccgagaagatgaccatttccaggataatcaagacatt 426 |||||| ||||| || ||||| || ||||||| ||||||||| | ||| | ||||||||| Sbjct: 967 atggtaagcatattgttggagaacggagaagaagaccatttcgatgatcaccaagacatt 908 Query: 427 ctggattgcctcctggatgtgctccacgtccagccagaaatggtgagactgaatcacccc 486 |||||||||||||||||||||||||||||||| |||||||||||| |||||||| | ||| Sbjct: 907 ctggattgcctcctggatgtgctccacgtccaaccagaaatggtgggactgaatgatccc 848 Query: 487 tacagcagccaaaacatccagcgcacagccctgccagaaagagaagaagacaatcccttt 546 ||| ||||| ||||| || | ||| | |||||||||||||||||||||||||||||||| Sbjct: 847 tacggcagctaaaacctctaatgcaaaaccctgccagaaagagaagaagacaatcccttt 788 Query: 547 gatgcacaagaacttcgcaagaggcttgtgaggtgccaactccttggcaaacaagtgata 606 |||||| ||||| || |||||||| ||||||||||||| ||| || ||||||||||| || Sbjct: 787 gatgcataagaattttgcaagaggtttgtgaggtgccagctcttttgcaaacaagtggta 728 Query: 607 gaaaatgacca 617 |||||| |||| Sbjct: 727 gaaaataacca 717
>dbj|AK103102.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118N22, full insert sequence Length = 1292 Score = 307 bits (155), Expect = 2e-80 Identities = 272/311 (87%) Strand = Plus / Minus Query: 307 cctggatcattcgttcttcttcacagatttcgccttgtcagcgccgctgtacggagcgac 366 |||||||||||| ||||||||| | |||||||| ||||||| |||||||| ||||| || Sbjct: 1027 cctggatcattcattcttcttctcgaatttcgccctgtcagccccgctgtatggagcaac 968 Query: 367 atggtacgcatactgctggagtaccgagaagatgaccatttccaggataatcaagacatt 426 |||||| ||||| || ||||| || ||||||| ||||||||| | ||| | ||||||||| Sbjct: 967 atggtaagcatattgttggagaacggagaagaagaccatttcgatgatcaccaagacatt 908 Query: 427 ctggattgcctcctggatgtgctccacgtccagccagaaatggtgagactgaatcacccc 486 |||||||||||||||||||||||||||||||| |||||||||||| |||||||| | ||| Sbjct: 907 ctggattgcctcctggatgtgctccacgtccaaccagaaatggtgggactgaatgatccc 848 Query: 487 tacagcagccaaaacatccagcgcacagccctgccagaaagagaagaagacaatcccttt 546 ||| ||||| ||||| || | ||| | |||||||||||||||||||||||||||||||| Sbjct: 847 tacggcagctaaaacctctaatgcaaaaccctgccagaaagagaagaagacaatcccttt 788 Query: 547 gatgcacaagaacttcgcaagaggcttgtgaggtgccaactccttggcaaacaagtgata 606 |||||| ||||| || |||||||| ||||||||||||| ||| || ||||||||||| || Sbjct: 787 gatgcataagaattttgcaagaggtttgtgaggtgccagctcttttgcaaacaagtggta 728 Query: 607 gaaaatgacca 617 |||||| |||| Sbjct: 727 gaaaataacca 717
>dbj|AK068687.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160E09, full insert sequence Length = 1292 Score = 307 bits (155), Expect = 2e-80 Identities = 272/311 (87%) Strand = Plus / Minus Query: 307 cctggatcattcgttcttcttcacagatttcgccttgtcagcgccgctgtacggagcgac 366 |||||||||||| ||||||||| | |||||||| ||||||| |||||||| ||||| || Sbjct: 1027 cctggatcattcattcttcttctcgaatttcgccctgtcagccccgctgtatggagcaac 968 Query: 367 atggtacgcatactgctggagtaccgagaagatgaccatttccaggataatcaagacatt 426 |||||| ||||| || ||||| || ||||||| ||||||||| | ||| | ||||||||| Sbjct: 967 atggtaagcatattgttggagaacggagaagaagaccatttcgatgatcaccaagacatt 908 Query: 427 ctggattgcctcctggatgtgctccacgtccagccagaaatggtgagactgaatcacccc 486 |||||||||||||||||||||||||||||||| |||||||||||| |||||||| | ||| Sbjct: 907 ctggattgcctcctggatgtgctccacgtccaaccagaaatggtgggactgaatgatccc 848 Query: 487 tacagcagccaaaacatccagcgcacagccctgccagaaagagaagaagacaatcccttt 546 ||| ||||| ||||| || | ||| | |||||||||||||||||||||||||||||||| Sbjct: 847 tacggcagctaaaacctctaatgcaaaaccctgccagaaagagaagaagacaatcccttt 788 Query: 547 gatgcacaagaacttcgcaagaggcttgtgaggtgccaactccttggcaaacaagtgata 606 |||||| ||||| || |||||||| ||||||||||||| ||| || ||||||||||| || Sbjct: 787 gatgcataagaattttgcaagaggtttgtgaggtgccagctcttttgcaaacaagtggta 728 Query: 607 gaaaatgacca 617 |||||| |||| Sbjct: 727 gaaaataacca 717
>dbj|AK104035.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-G11, full insert sequence Length = 1268 Score = 299 bits (151), Expect = 6e-78 Identities = 271/311 (87%) Strand = Plus / Minus Query: 307 cctggatcattcgttcttcttcacagatttcgccttgtcagcgccgctgtacggagcgac 366 |||||||||||| ||||||||| | |||||||| ||||||| |||||||| ||||| || Sbjct: 1002 cctggatcattcattcttcttctcgaatttcgccctgtcagccccgctgtatggagcaac 943 Query: 367 atggtacgcatactgctggagtaccgagaagatgaccatttccaggataatcaagacatt 426 |||||| ||||| || ||||| || |||||| ||||||||| | ||| | ||||||||| Sbjct: 942 atggtaagcatattgttggagaacggagaaggagaccatttcgatgatcaccaagacatt 883 Query: 427 ctggattgcctcctggatgtgctccacgtccagccagaaatggtgagactgaatcacccc 486 |||||||||||||||||||||||||||||||| |||||||||||| |||||||| | ||| Sbjct: 882 ctggattgcctcctggatgtgctccacgtccaaccagaaatggtgggactgaatgatccc 823 Query: 487 tacagcagccaaaacatccagcgcacagccctgccagaaagagaagaagacaatcccttt 546 ||| ||||| ||||| || | ||| | |||||||||||||||||||||||||||||||| Sbjct: 822 tacggcagctaaaacctctaatgcaaaaccctgccagaaagagaagaagacaatcccttt 763 Query: 547 gatgcacaagaacttcgcaagaggcttgtgaggtgccaactccttggcaaacaagtgata 606 |||||| ||||| || |||||||| ||||||||||||| ||| || ||||||||||| || Sbjct: 762 gatgcataagaattttgcaagaggtttgtgaggtgccagctcttttgcaaacaagtggta 703 Query: 607 gaaaatgacca 617 |||||| |||| Sbjct: 702 gaaaataacca 692
>gb|AY596590.1| Saccharum officinarum clone SCJFLR1013H05, complete sequence Length = 1413 Score = 272 bits (137), Expect = 1e-69 Identities = 278/325 (85%) Strand = Plus / Plus Query: 313 tcattcgttcttcttcacagatttcgccttgtcagcgccgctgtacggagcgacatggta 372 |||||||||||||||| | | |||||| |||||||||||||||| || ||||||||||| Sbjct: 354 tcattcgttcttcttctcgaacttcgccctgtcagcgccgctgtagggggcgacatggta 413 Query: 373 cgcatactgctggagtaccgagaagatgaccatttccaggataatcaagacattctggat 432 || || ||||||| || | ||| | ||||| || |||||||||| ||| |||||||| Sbjct: 414 tgcgtattgctggatgacggcgaacacaaccatctcaaggataatcaggacgttctggat 473 Query: 433 tgcctcctggatgtgctccacgtccagccagaaatggtgagactgaatcacccctacagc 492 |||||||||||||||||||||||||||||||||||||| || | ||||| ||| | | Sbjct: 474 cgcctcctggatgtgctccacgtccagccagaaatggtgggatttgatcacacctgcttc 533 Query: 493 agccaaaacatccagcgcacagccctgccagaaagagaagaagacaatccctttgatgca 552 || |||| ||| |||||| | |||||||||||||||||||||||||||||||||||||| Sbjct: 534 agttaaaatatcgagcgcaaaaccctgccagaaagagaagaagacaatccctttgatgca 593 Query: 553 caagaacttcgcaagaggcttgtgaggtgccaactccttggcaaacaagtgatagaaaat 612 ||||||||| |||||||||||||||||||||| ||| || ||||||||||| ||||||| Sbjct: 594 caagaactttgcaagaggcttgtgaggtgccagctctttagcaaacaagtggtagaaaag 653 Query: 613 gaccaaggcatacagtgccatggag 637 ||||| ||||| | ||||||||| Sbjct: 654 aaccaaagcatataaggccatggag 678
>gb|AY103628.1| Zea mays PCO109231 mRNA sequence Length = 1907 Score = 236 bits (119), Expect = 7e-59 Identities = 257/303 (84%) Strand = Plus / Minus Query: 307 cctggatcattcgttcttcttcacagatttcgccttgtcagcgccgctgtacggagcgac 366 ||||| |||||||||||||||| | | || ||| ||||||| |||||||| || ||||| Sbjct: 1104 cctggttcattcgttcttcttctcgaacttggccctgtcagccccgctgtagggggcgac 1045 Query: 367 atggtacgcatactgctggagtaccgagaagatgaccatttccaggataatcaagacatt 426 ||||| || |||||||||| || ||||| | ||||| || ||||| | || ||| || Sbjct: 1044 gtggtatgcgtactgctggatgacggagaacaccaccatctcaaggatcaccaggacgtt 985 Query: 427 ctggattgcctcctggatgtgctccacgtccagccagaaatggtgagactgaatcacccc 486 |||||| |||||||||||||||||||||||||||||||||||||| || | ||||| || Sbjct: 984 ctggatcgcctcctggatgtgctccacgtccagccagaaatggtgggatttgatcacgcc 925 Query: 487 tacagcagccaaaacatccagcgcacagccctgccagaaagagaagaagacaatcccttt 546 | | | |||||||| |||||| | |||||||||||||||||||||||||||||||| Sbjct: 924 tgcttgggttaaaacatcgagcgcaaaaccctgccagaaagagaagaagacaatcccttt 865 Query: 547 gatgcacaagaacttcgcaagaggcttgtgaggtgccaactccttggcaaacaagtgata 606 ||||||||||||||| |||||||||||||||||||||| ||| || ||||||||||| || Sbjct: 864 gatgcacaagaactttgcaagaggcttgtgaggtgccagctctttagcaaacaagtggta 805 Query: 607 gaa 609 ||| Sbjct: 804 gaa 802
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 196 bits (99), Expect = 6e-47 Identities = 171/195 (87%) Strand = Plus / Plus Query: 307 cctggatcattcgttcttcttcacagatttcgccttgtcagcgccgctgtacggagcgac 366 |||||||||||| ||||||||| | |||||||| ||||||| |||||||| ||||| || Sbjct: 19107943 cctggatcattcattcttcttctcgaatttcgccctgtcagccccgctgtatggagcaac 19108002 Query: 367 atggtacgcatactgctggagtaccgagaagatgaccatttccaggataatcaagacatt 426 |||||| ||||| || ||||| || ||||||| ||||||||| | ||| | ||||||||| Sbjct: 19108003 atggtaagcatattgttggagaacggagaagaagaccatttcgatgatcaccaagacatt 19108062 Query: 427 ctggattgcctcctggatgtgctccacgtccagccagaaatggtgagactgaatcacccc 486 |||||||||||||||||||||||||||||||| |||||||||||| |||||||| | ||| Sbjct: 19108063 ctggattgcctcctggatgtgctccacgtccaaccagaaatggtgggactgaatgatccc 19108122 Query: 487 tacagcagccaaaac 501 ||| ||||| ||||| Sbjct: 19108123 tacggcagctaaaac 19108137 Score = 131 bits (66), Expect = 3e-27 Identities = 93/102 (91%) Strand = Plus / Plus Query: 516 cctgccagaaagagaagaagacaatccctttgatgcacaagaacttcgcaagaggcttgt 575 ||||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||| Sbjct: 19108856 cctgccagaaagagaagaagacaatccctttgatgcataagaattttgcaagaggtttgt 19108915 Query: 576 gaggtgccaactccttggcaaacaagtgatagaaaatgacca 617 ||||||||| ||| || ||||||||||| |||||||| |||| Sbjct: 19108916 gaggtgccagctcttttgcaaacaagtggtagaaaataacca 19108957
>dbj|AP005127.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0062D12 Length = 155408 Score = 196 bits (99), Expect = 6e-47 Identities = 171/195 (87%) Strand = Plus / Plus Query: 307 cctggatcattcgttcttcttcacagatttcgccttgtcagcgccgctgtacggagcgac 366 |||||||||||| ||||||||| | |||||||| ||||||| |||||||| ||||| || Sbjct: 31338 cctggatcattcattcttcttctcgaatttcgccctgtcagccccgctgtatggagcaac 31397 Query: 367 atggtacgcatactgctggagtaccgagaagatgaccatttccaggataatcaagacatt 426 |||||| ||||| || ||||| || ||||||| ||||||||| | ||| | ||||||||| Sbjct: 31398 atggtaagcatattgttggagaacggagaagaagaccatttcgatgatcaccaagacatt 31457 Query: 427 ctggattgcctcctggatgtgctccacgtccagccagaaatggtgagactgaatcacccc 486 |||||||||||||||||||||||||||||||| |||||||||||| |||||||| | ||| Sbjct: 31458 ctggattgcctcctggatgtgctccacgtccaaccagaaatggtgggactgaatgatccc 31517 Query: 487 tacagcagccaaaac 501 ||| ||||| ||||| Sbjct: 31518 tacggcagctaaaac 31532 Score = 131 bits (66), Expect = 3e-27 Identities = 93/102 (91%) Strand = Plus / Plus Query: 516 cctgccagaaagagaagaagacaatccctttgatgcacaagaacttcgcaagaggcttgt 575 ||||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||| Sbjct: 32251 cctgccagaaagagaagaagacaatccctttgatgcataagaattttgcaagaggtttgt 32310 Query: 576 gaggtgccaactccttggcaaacaagtgatagaaaatgacca 617 ||||||||| ||| || ||||||||||| |||||||| |||| Sbjct: 32311 gaggtgccagctcttttgcaaacaagtggtagaaaataacca 32352
>gb|BT013402.1| Lycopersicon esculentum clone 135714R, mRNA sequence Length = 1163 Score = 75.8 bits (38), Expect = 2e-10 Identities = 83/98 (84%) Strand = Plus / Minus Query: 514 gccctgccagaaagagaagaagacaatccctttgatgcacaagaacttcgcaagaggctt 573 |||||||||||| ||| |||||||| ||||||| |||| |||||| || || ||||| Sbjct: 734 gccctgccagaagacgaaaaagacaattcctttgacacacaggaacttggctagtggctt 675 Query: 574 gtgaggtgccaactccttggcaaacaagtgatagaaaa 611 |||||| ||||||||||| ||||||| ||| ||||||| Sbjct: 674 gtgaggcgccaactccttcgcaaacacgtggtagaaaa 637
>gb|AC018843.4|AC018843 Homo sapiens chromosome 3 clone RP11-900O22 map 3p, complete sequence Length = 211012 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 237 aatcaatactcccagcacatacacaca 263 |||||||| |||||||||||||||||| Sbjct: 57852 aatcaatattcccagcacatacacaca 57826
>gb|AC018505.4|AC018505 Homo sapiens chromosome 3 clone RP11-58I13 map 3p, complete sequence Length = 196044 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 237 aatcaatactcccagcacatacacaca 263 |||||||| |||||||||||||||||| Sbjct: 110867 aatcaatattcccagcacatacacaca 110841
>gb|AC018831.4|AC018831 Homo sapiens chromosome 3 clone RP11-481B18 map 3p, complete sequence Length = 178548 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 237 aatcaatactcccagcacatacacaca 263 |||||||| |||||||||||||||||| Sbjct: 139248 aatcaatattcccagcacatacacaca 139222
>gb|AC011599.8|AC011599 Homo sapiens 3 BAC RP11-606C6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 209876 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 237 aatcaatactcccagcacatacacaca 263 |||||||| |||||||||||||||||| Sbjct: 99018 aatcaatattcccagcacatacacaca 99044
>gb|AC069271.5| Homo sapiens chromosome 3 clone RP11-715I4 map 3p, complete sequence Length = 229408 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 237 aatcaatactcccagcacatacacaca 263 |||||||| |||||||||||||||||| Sbjct: 191564 aatcaatattcccagcacatacacaca 191538
>ref|NM_118277.3| Arabidopsis thaliana unknown protein AT4G21570 mRNA, complete cds Length = 1286 Score = 44.1 bits (22), Expect = 0.56 Identities = 58/70 (82%) Strand = Plus / Minus Query: 530 aagaagacaatccctttgatgcacaagaacttcgcaagaggcttgtgaggtgccaactcc 589 ||||||||||| ||||||||||| | |||||| || || || || ||||| || | |||| Sbjct: 832 aagaagacaattcctttgatgcagaggaactttgcgagtggattatgaggagcaagctcc 773 Query: 590 ttggcaaaca 599 || ||||||| Sbjct: 772 ttagcaaaca 763 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Minus Query: 422 acattctggattgcctcctggatgtgctccacgtccagccagaaatggtgaga 474 |||||||| ||||| || ||||| || || || |||| ||||||||||||||| Sbjct: 940 acattctgaattgcttcttggatttgttctacctccaaccagaaatggtgaga 888
>ref|XM_370228.1| Magnaporthe grisea 70-15 chromosome II hypothetical protein (MG06725.4) partial mRNA Length = 1290 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 488 acagcagccaaaacatccagcg 509 |||||||||||||||||||||| Sbjct: 686 acagcagccaaaacatccagcg 707
>emb|AL161555.2|ATCHRIV55 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 55 Length = 194916 Score = 44.1 bits (22), Expect = 0.56 Identities = 58/70 (82%) Strand = Plus / Plus Query: 530 aagaagacaatccctttgatgcacaagaacttcgcaagaggcttgtgaggtgccaactcc 589 ||||||||||| ||||||||||| | |||||| || || || || ||||| || | |||| Sbjct: 89299 aagaagacaattcctttgatgcagaggaactttgcgagtggattatgaggagcaagctcc 89358 Query: 590 ttggcaaaca 599 || ||||||| Sbjct: 89359 ttagcaaaca 89368 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Plus Query: 422 acattctggattgcctcctggatgtgctccacgtccagccagaaatggtgaga 474 |||||||| ||||| || ||||| || || || |||| ||||||||||||||| Sbjct: 89101 acattctgaattgcttcttggatttgttctacctccaaccagaaatggtgaga 89153
>emb|AL035527.1|ATF17L22 Arabidopsis thaliana DNA chromosome 4, BAC clone F17L22 (ESSAII project) Length = 107702 Score = 44.1 bits (22), Expect = 0.56 Identities = 58/70 (82%) Strand = Plus / Plus Query: 530 aagaagacaatccctttgatgcacaagaacttcgcaagaggcttgtgaggtgccaactcc 589 ||||||||||| ||||||||||| | |||||| || || || || ||||| || | |||| Sbjct: 3242 aagaagacaattcctttgatgcagaggaactttgcgagtggattatgaggagcaagctcc 3301 Query: 590 ttggcaaaca 599 || ||||||| Sbjct: 3302 ttagcaaaca 3311 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Plus Query: 422 acattctggattgcctcctggatgtgctccacgtccagccagaaatggtgaga 474 |||||||| ||||| || ||||| || || || |||| ||||||||||||||| Sbjct: 3044 acattctgaattgcttcttggatttgttctacctccaaccagaaatggtgaga 3096
>emb|AL022603.1|ATF18E5 Arabidopsis thaliana DNA chromosome 4, BAC clone F18E5 (ESSAII project) Length = 95266 Score = 44.1 bits (22), Expect = 0.56 Identities = 58/70 (82%) Strand = Plus / Plus Query: 530 aagaagacaatccctttgatgcacaagaacttcgcaagaggcttgtgaggtgccaactcc 589 ||||||||||| ||||||||||| | |||||| || || || || ||||| || | |||| Sbjct: 76291 aagaagacaattcctttgatgcagaggaactttgcgagtggattatgaggagcaagctcc 76350 Query: 590 ttggcaaaca 599 || ||||||| Sbjct: 76351 ttagcaaaca 76360 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Plus Query: 422 acattctggattgcctcctggatgtgctccacgtccagccagaaatggtgaga 474 |||||||| ||||| || ||||| || || || |||| ||||||||||||||| Sbjct: 76093 acattctgaattgcttcttggatttgttctacctccaaccagaaatggtgaga 76145
>gb|AY114568.1| Arabidopsis thaliana putative protein (At4g21570) mRNA, complete cds Length = 916 Score = 44.1 bits (22), Expect = 0.56 Identities = 58/70 (82%) Strand = Plus / Minus Query: 530 aagaagacaatccctttgatgcacaagaacttcgcaagaggcttgtgaggtgccaactcc 589 ||||||||||| ||||||||||| | |||||| || || || || ||||| || | |||| Sbjct: 668 aagaagacaattcctttgatgcagaggaactttgcgagtggattatgaggagcaagctcc 609 Query: 590 ttggcaaaca 599 || ||||||| Sbjct: 608 ttagcaaaca 599 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Minus Query: 422 acattctggattgcctcctggatgtgctccacgtccagccagaaatggtgaga 474 |||||||| ||||| || ||||| || || || |||| ||||||||||||||| Sbjct: 776 acattctgaattgcttcttggatttgttctacctccaaccagaaatggtgaga 724
>gb|AY092966.1| Arabidopsis thaliana putative protein (At4g21570) mRNA, complete cds Length = 1220 Score = 44.1 bits (22), Expect = 0.56 Identities = 58/70 (82%) Strand = Plus / Minus Query: 530 aagaagacaatccctttgatgcacaagaacttcgcaagaggcttgtgaggtgccaactcc 589 ||||||||||| ||||||||||| | |||||| || || || || ||||| || | |||| Sbjct: 832 aagaagacaattcctttgatgcagaggaactttgcgagtggattatgaggagcaagctcc 773 Query: 590 ttggcaaaca 599 || ||||||| Sbjct: 772 ttagcaaaca 763 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Minus Query: 422 acattctggattgcctcctggatgtgctccacgtccagccagaaatggtgaga 474 |||||||| ||||| || ||||| || || || |||| ||||||||||||||| Sbjct: 940 acattctgaattgcttcttggatttgttctacctccaaccagaaatggtgaga 888
>emb|BX828223.1|CNS0A3UK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH65ZC03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1327 Score = 44.1 bits (22), Expect = 0.56 Identities = 58/70 (82%) Strand = Plus / Minus Query: 530 aagaagacaatccctttgatgcacaagaacttcgcaagaggcttgtgaggtgccaactcc 589 ||||||||||| ||||||||||| | |||||| || || || || ||||| || | |||| Sbjct: 921 aagaagacaattcctttgatgcagaggaactttgcgagtggattatgaggagcaagctcc 862 Query: 590 ttggcaaaca 599 || ||||||| Sbjct: 861 ttagcaaaca 852 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Minus Query: 422 acattctggattgcctcctggatgtgctccacgtccagccagaaatggtgaga 474 |||||||| ||||| || ||||| || || || |||| ||||||||||||||| Sbjct: 1029 acattctgaattgcttcttggatttgttctacctccaaccagaaatggtgaga 977
>gb|AC119954.12| Mus musculus chromosome 1, clone RP24-450P2, complete sequence Length = 179212 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 572 ttgtgaggtgccaactccttg 592 ||||||||||||||||||||| Sbjct: 118915 ttgtgaggtgccaactccttg 118895
>gb|AC160529.6| Mus musculus chromosome 1, clone RP24-141F19, complete sequence Length = 167687 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 572 ttgtgaggtgccaactccttg 592 ||||||||||||||||||||| Sbjct: 114108 ttgtgaggtgccaactccttg 114128
>gb|AC091762.27| Mus musculus strain C57BL/6J clone rp23-151n4 map 2, complete sequence Length = 204734 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 252 cacatacacacaaaaccatac 272 ||||||||||||||||||||| Sbjct: 102219 cacatacacacaaaaccatac 102239
>gb|AC012651.8| Homo sapiens chromosome 15 clone RP11-164J13 map 15q15, complete sequence Length = 145233 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 gtgtccacaaggaaatgcaca 219 ||||||||||||||||||||| Sbjct: 34069 gtgtccacaaggaaatgcaca 34049
>emb|BX841534.1|CNS09YH3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS42ZB06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1133 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Minus Query: 422 acattctggattgcctcctggatgtgctccacgtccagccagaaatggtgaga 474 |||||||| ||||| || ||||| || || || |||| ||||||||||||||| Sbjct: 910 acattctgaattgcttcttggatttgttctacctccaaccagaaatggtgaga 858
>gb|AC068538.8| Homo sapiens BAC clone RP11-141G4 from 2, complete sequence Length = 173169 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 405 tttccaggataatcaagacat 425 ||||||||||||||||||||| Sbjct: 17920 tttccaggataatcaagacat 17940
>dbj|AK172978.1| Mus musculus mRNA for mKIAA0605 protein Length = 6010 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 252 cacatacacacaaaaccatac 272 ||||||||||||||||||||| Sbjct: 3802 cacatacacacaaaaccatac 3782
>emb|AL845266.2| Mouse DNA sequence from clone RP23-449M10 on chromosome 2, complete sequence Length = 171836 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 252 cacatacacacaaaaccatac 272 ||||||||||||||||||||| Sbjct: 121909 cacatacacacaaaaccatac 121889
>ref|NM_105805.2| Arabidopsis thaliana unknown protein AT1G71360 mRNA, complete cds Length = 1380 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 521 cagaaagagaagaagacaat 540 |||||||||||||||||||| Sbjct: 694 cagaaagagaagaagacaat 713
>gb|AC114629.12| Mus musculus chromosome 1, clone RP24-111F20, complete sequence Length = 178437 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 516 cctgccagaaagagaagaagacaa 539 |||||||| ||||||||||||||| Sbjct: 86805 cctgccaggaagagaagaagacaa 86828
>gb|AY016021.1| Mus musculus clone 03245 alpha globin gene cluster, complete sequence Length = 183192 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 cacatacacacaaaaccata 271 |||||||||||||||||||| Sbjct: 72605 cacatacacacaaaaccata 72624
>ref|NM_181569.1| Mus musculus alpha globin regulatory element containing gene (Mare), mRNA Length = 2319 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 cacatacacacaaaaccata 271 |||||||||||||||||||| Sbjct: 2086 cacatacacacaaaaccata 2067
>gb|AC154384.2| Mus musculus BAC clone RP23-39K21 from chromosome 14, complete sequence Length = 242114 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 586 ctccttggcaaacaagtgat 605 |||||||||||||||||||| Sbjct: 215347 ctccttggcaaacaagtgat 215366
>ref|XM_991541.1| PREDICTED: Mus musculus membrane-associated ring finger (C3HC4) 4 (March4), mRNA Length = 1182 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 516 cctgccagaaagagaagaagacaa 539 |||||||| ||||||||||||||| Sbjct: 815 cctgccaggaagagaagaagacaa 792
>ref|XM_910671.1| PREDICTED: Mus musculus membrane-associated ring finger (C3HC4) 4 (March4), mRNA Length = 1239 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 516 cctgccagaaagagaagaagacaa 539 |||||||| ||||||||||||||| Sbjct: 872 cctgccaggaagagaagaagacaa 849
>gb|BC014754.1| Mus musculus N-methylpurine-DNA glycosylase, mRNA (cDNA clone MGC:25347 IMAGE:4486938), complete cds Length = 1751 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 cacatacacacaaaaccata 271 |||||||||||||||||||| Sbjct: 1688 cacatacacacaaaaccata 1707
>gb|AC096051.7| Rattus norvegicus 10 BAC CH230-21G1 (Children's Hospital Oakland Research Institute) complete sequence Length = 216194 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 cacatacacacaaaaccata 271 |||||||||||||||||||| Sbjct: 62421 cacatacacacaaaaccata 62440
>emb|AL731827.6| Mouse DNA sequence from clone RP23-109M24 on chromosome 11, complete sequence Length = 115109 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 517 ctgccagaaagagaagaaga 536 |||||||||||||||||||| Sbjct: 113076 ctgccagaaagagaagaaga 113095
>emb|AL772144.4| Zebrafish DNA sequence from clone CH211-164J3 in linkage group 3 Contains three CpG islands, complete sequence Length = 153837 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 tttcctatgtgttgatcctg 148 |||||||||||||||||||| Sbjct: 92829 tttcctatgtgttgatcctg 92810
>gb|AC090741.5| Homo sapiens chromosome 8, clone RP11-677P13, complete sequence Length = 119956 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 462 agaaatggtgagactgaatc 481 |||||||||||||||||||| Sbjct: 58813 agaaatggtgagactgaatc 58832
>gb|AC087233.6| Mus Musculus Chromosome 17 RP23-476A24, complete sequence Length = 165330 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 tcattcgttcttcttcacag 332 |||||||||||||||||||| Sbjct: 135843 tcattcgttcttcttcacag 135824
>gb|AC100802.2| Homo sapiens chromosome 8, clone CTB-2109K7, complete sequence Length = 203506 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 462 agaaatggtgagactgaatc 481 |||||||||||||||||||| Sbjct: 79466 agaaatggtgagactgaatc 79485
>dbj|AK154884.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630110I15 product:unclassifiable, full insert sequence Length = 2975 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 cacatacacacaaaaccata 271 |||||||||||||||||||| Sbjct: 2378 cacatacacacaaaaccata 2359
>dbj|AK156067.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830006M03 product:N-methylpurine-DNA glycosylase, full insert sequence Length = 1709 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 cacatacacacaaaaccata 271 |||||||||||||||||||| Sbjct: 1661 cacatacacacaaaaccata 1680
>gb|DP000048.1| Cercopithecus aethiops target 106 genomic scaffold Length = 583711 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 acagcacggtaacaacaaca 126 |||||||||||||||||||| Sbjct: 434240 acagcacggtaacaacaaca 434221
>emb|BX813317.11| Mouse DNA sequence from clone RP24-297H17 on chromosome 2, complete sequence Length = 157571 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 236 gaatcaatactcccagcacatacacaca 263 |||||||||| |||| |||||||||||| Sbjct: 21042 gaatcaatacacccatcacatacacaca 21069
>dbj|AK036405.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830006D05 product:CGTHBA PROTEIN (-14 GENE PROTEIN) homolog [Homo sapiens], full insert sequence Length = 2319 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 cacatacacacaaaaccata 271 |||||||||||||||||||| Sbjct: 2086 cacatacacacaaaaccata 2067
>dbj|AK081902.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130086A11 product:C16ORF35 homolog [Mus musculus], full insert sequence Length = 2319 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 cacatacacacaaaaccata 271 |||||||||||||||||||| Sbjct: 2088 cacatacacacaaaaccata 2069
>gb|AC124316.32| Mus musculus chromosome 17, clone RP24-222O13, complete sequence Length = 223552 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 tcattcgttcttcttcacag 332 |||||||||||||||||||| Sbjct: 191473 tcattcgttcttcttcacag 191492
>dbj|AK086378.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930024I24 product:SIMILAR TO CONSERVED GENE TELOMERIC TO ALPHA GLOBIN CLUSTER (UNKNOWN) (PROTEIN FOR MGC:4491) homolog [Homo sapiens], full insert sequence Length = 3380 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 cacatacacacaaaaccata 271 |||||||||||||||||||| Sbjct: 1990 cacatacacacaaaaccata 1971
>gb|AC016162.5|AC016162 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence Length = 107579 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 521 cagaaagagaagaagacaat 540 |||||||||||||||||||| Sbjct: 49964 cagaaagagaagaagacaat 49983
>gb|AC016163.6|AC016163 Arabidopsis thaliana chromosome 1 BAC F26A9 genomic sequence, complete sequence Length = 89653 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 521 cagaaagagaagaagacaat 540 |||||||||||||||||||| Sbjct: 83173 cagaaagagaagaagacaat 83192
>emb|Z96647.1|HS5QT072 H.sapiens telomeric DNA sequence, clone 5QTEL072, read 5QTELOO072.seq Length = 558 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 cacatacacacaaaaccata 271 |||||||||||||||||||| Sbjct: 20 cacatacacacaaaaccata 1
>emb|CT010450.15| Mouse DNA sequence from clone RP23-443B9 on chromosome 12, complete sequence Length = 193155 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 aatactcccagcacatacac 260 |||||||||||||||||||| Sbjct: 23237 aatactcccagcacatacac 23218
>ref|NM_010822.2| Mus musculus N-methylpurine-DNA glycosylase (Mpg), mRNA Length = 1751 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 cacatacacacaaaaccata 271 |||||||||||||||||||| Sbjct: 1688 cacatacacacaaaaccata 1707
>emb|AL928837.8| Zebrafish DNA sequence from clone CH211-105F16, complete sequence Length = 186085 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 tttcctatgtgttgatcctg 148 |||||||||||||||||||| Sbjct: 45632 tttcctatgtgttgatcctg 45613
>emb|AL929446.5| Mouse DNA sequence from clone RP23-177M10 on chromosome 11, complete sequence Length = 118812 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 cacatacacacaaaaccata 271 |||||||||||||||||||| Sbjct: 93223 cacatacacacaaaaccata 93242
>emb|AL591209.17| Mouse DNA sequence from clone RP23-309H19 on chromosome 11, complete sequence Length = 199634 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 cagcacatacacacaaaacc 268 |||||||||||||||||||| Sbjct: 198587 cagcacatacacacaaaacc 198568
>emb|AL591205.13| Mouse DNA sequence from clone RP23-333M1 on chromosome 11, complete sequence Length = 183369 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 cagcacatacacacaaaacc 268 |||||||||||||||||||| Sbjct: 953 cagcacatacacacaaaacc 934
>emb|AL805958.8| Mouse DNA sequence from clone RP23-179F9 on chromosome 2, complete sequence Length = 198627 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 252 cacatacacacaaaaccatacaag 275 ||||||||||||||| |||||||| Sbjct: 123965 cacatacacacaaaaacatacaag 123942 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,686,470 Number of Sequences: 3902068 Number of extensions: 5686470 Number of successful extensions: 126111 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 125961 Number of HSP's gapped (non-prelim): 148 length of query: 637 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 614 effective length of database: 17,143,297,704 effective search space: 10525984790256 effective search space used: 10525984790256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)