Clone Information

BLAST Search Result

Clone Name	rbags9j08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK061891.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	256	8e-65
2	dbj\|AK099795.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	256	8e-65
3	dbj\|AK072244.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	256	8e-65
4	gb\|AC104708.2\| Oryza sativa (japonica cultivar-group) chromosome...	246	8e-62
5	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	246	8e-62
6	gb\|AY103798.1\| Zea mays PCO149393 mRNA sequence	240	5e-60
7	emb\|AL355852.23\| Human DNA sequence from clone RP11-403E24 on ch...	48	0.036
8	emb\|CR936257.1\| Natronomonas pharaonis DSM 2160 complete genome	46	0.14
9	emb\|Z83836.2\|HS111J24 Human DNA sequence from clone RP1-111J24 o...	44	0.56
10	gb\|AC113761.6\| Rattus norvegicus X BAC CH230-91H16 (Children's H...	44	0.56
11	gb\|AC119825.11\| Mus musculus chromosome 3, clone RP23-358O22, co...	42	2.2
12	emb\|Z75952.1\|CEF29D10 Caenorhabditis elegans Cosmid F29D10, comp...	42	2.2
13	emb\|AL122006.11\|HSJ730H16 Human DNA sequence from clone RP4-730H...	42	2.2
14	gb\|U52515.1\|CEU52515 Caenorhabditis elegans class I unconvention...	42	2.2
15	ref\|NM_059992.2\| Caenorhabditis elegans F29D10.4 (myosin) mRNA, ...	42	2.2
16	gb\|AC096623.31\| Mus musculus strain 129/SvJ chromosome 3 clone m...	42	2.2
17	gb\|AC130969.4\| Rattus norvegicus 2 BAC CH230-105B13 (Children's ...	40	8.7
18	gb\|AC117098.6\| Rattus norvegicus 2 BAC CH230-271M7 (Children's H...	40	8.7
19	ref\|XM_757329.1\| Ustilago maydis 521 hypothetical protein (UM062...	40	8.7
20	emb\|CR937052.2\| Rattus norvegicus chromosome 1 BAC CH230-445C15,...	40	8.7
21	emb\|AL390115.18\| Human DNA sequence from clone RP11-479J7 on chr...	40	8.7
22	emb\|AL358174.12\| Human DNA sequence from clone RP11-387H19 on ch...	40	8.7
23	emb\|AL024474.1\|HS91J24 Human DNA sequence from clone RP1-91J24 o...	40	8.7
24	gb\|CP000083.1\| Colwellia psychrerythraea 34H, complete genome	40	8.7
25	gb\|AC161149.6\| Mus musculus BAC clone RP23-350B16 from chromosom...	40	8.7
26	gb\|AC099804.3\| Homo sapiens chromosome 17, clone CTD-2357A8, com...	40	8.7
27	emb\|BX510316.11\| Zebrafish DNA sequence from clone CH211-194J3 i...	40	8.7
28	gb\|AC087368.7\| Homo sapiens chromosome 8, clone RP11-711G22, com...	40	8.7
29	gb\|AC009093.10\| Homo sapiens chromosome 16 clone RP11-426C22, co...	40	8.7
30	gb\|AC092795.2\| Homo sapiens chromosome 3 clone RP11-9J18, comple...	40	8.7
31	emb\|BX248308.11\| Zebrafish DNA sequence from clone DKEY-247M21 i...	40	8.7
32	gb\|AC009901.6\|AC009901 Homo sapiens chromosome 8, clone RP11-98H...	40	8.7
33	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.7
34	gb\|AC138512.4\| Homo sapiens chromosome 16 clone RP11-93B18, comp...	40	8.7
35	emb\|BX649401.4\| Zebrafish DNA sequence from clone DKEY-48E10 in ...	40	8.7
36	gb\|AC134312.3\| Homo sapiens chromosome 16 clone RP11-863P13, com...	40	8.7
37	gb\|AC021068.17\|AC021068 Homo sapiens 3 BAC RP11-48O22 (Roswell P...	40	8.7
38	gb\|AC022966.13\| Homo sapiens chromosome 17, clone RP11-323N12, c...	40	8.7
39	gb\|AC093496.2\| Homo sapiens chromosome 3 clone RP11-536I6 map 3p...	40	8.7
40	gb\|AC093495.2\| Homo sapiens chromosome 3 clone RP11-434D12 map 3...	40	8.7
41	gb\|AC009297.4\| Homo sapiens BAC clone RP11-3E14 from 2, complete...	40	8.7
42	dbj\|AP003510.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.7
43	emb\|BX248743.2\| Zebrafish DNA sequence from clone CH211-202P11, ...	40	8.7
44	emb\|BX324122.17\| Mouse DNA sequence from clone RP23-317B9 on chr...	40	8.7
45	emb\|AL808014.8\| Mouse DNA sequence from clone RP23-142A6 on chro...	40	8.7
46	gb\|AF125353.1\|F125350S04 Homo sapiens cytohesin 1 gene, exon 5	40	8.7
47	emb\|Z57405.1\|HS175B11R H.sapiens CpG island DNA genomic Mse1 fra...	40	8.7
48	emb\|BX547928.7\| Zebrafish DNA sequence from clone DKEY-172O10 in...	40	8.7
49	emb\|CT806423.2\| Pan troglodytes chromosome X clone CH251-25B01 m...	40	8.7
50	emb\|AL110505.5\|CNS01DRA Human chromosome 14 DNA sequence BAC R-8...	40	8.7
51	emb\|AJ495848.1\|PLI495848 Paracentrotus lividus partial dnmt1 gen...	40	8.7
52	gb\|AC113087.11\| Mus musculus chromosome 14, clone RP23-293A2, co...	40	8.7
53	dbj\|AP005208.3\| Homo sapiens genomic DNA, chromosome 18 clone:RP...	40	8.7
54	gb\|AC133168.3\| Mus musculus BAC clone RP24-217I2 from 1, complet...	40	8.7
55	emb\|AL807800.7\| Mouse DNA sequence from clone RP23-438D2 on chro...	40	8.7
56	emb\|AL772296.6\| Mouse DNA sequence from clone RP23-66O9 on chrom...	40	8.7
57	emb\|AL670230.12\| Mouse DNA sequence from clone RP23-15D12 on chr...	40	8.7

>dbj|AK061891.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-G03, full
           insert sequence
          Length = 1304

 Score =  256 bits (129), Expect = 8e-65
 Identities = 147/153 (96%)
 Strand = Plus / Minus

                                                                       
Query: 485 gttcaaccttcttcactgaaggcaaaaacccctccaagcatgtcgtcgttgtccccatct 544
           |||||||||||||| ||||||||||||||  | ||||||||||| ||||| |||||||||
Sbjct: 769 gttcaaccttcttcgctgaaggcaaaaacagccccaagcatgtcatcgttatccccatct 710

                                                                       
Query: 545 tcctcgggcttctctctctcgcagtggctgctgctgctgtcagcatcagtaacagcttca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tcctcgggcttctctctctcgcagtggctgctgctgctgtcagcatcagtaacagcttca 650

                                            
Query: 605 gttaactcacggcagtcatcgagttctgatatt 637
           |||||||||||||||||||||||||||||||||
Sbjct: 649 gttaactcacggcagtcatcgagttctgatatt 617



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 57/60 (95%)
 Strand = Plus / Minus

                                                                        
Query: 45   tgtacaaataaacatggaacattcacaggccctggcaggaagcagtcaacaaatatggct 104
            |||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 1210 tgtacaaataaacaaggaacattaacaggccttggcaggaagcagtcaacaaatatggct 1151



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 77/91 (84%)
 Strand = Plus / Minus

                                                                       
Query: 324 gcttcacctttcaaatatgtaccaaacattagattatcaacgcggcatgactttattcca 383
           |||||||||||| ||||||||||||| | |||||||||| | | |||  | |||||||||
Sbjct: 917 gcttcacctttctaatatgtaccaaatagtagattatcatctcagcaccaatttattcca 858

                                          
Query: 384 cggaaacctactagaattccaccattttcta 414
           || || |||| | ||| ||||||||||||||
Sbjct: 857 cgaaagcctaatggaaatccaccattttcta 827

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>dbj|AK099795.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097F10, full
            insert sequence
          Length = 2538

 Score =  256 bits (129), Expect = 8e-65
 Identities = 147/153 (96%)
 Strand = Plus / Minus

                                                                        
Query: 485  gttcaaccttcttcactgaaggcaaaaacccctccaagcatgtcgtcgttgtccccatct 544
            |||||||||||||| ||||||||||||||  | ||||||||||| ||||| |||||||||
Sbjct: 2002 gttcaaccttcttcgctgaaggcaaaaacagccccaagcatgtcatcgttatccccatct 1943

                                                                        
Query: 545  tcctcgggcttctctctctcgcagtggctgctgctgctgtcagcatcagtaacagcttca 604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1942 tcctcgggcttctctctctcgcagtggctgctgctgctgtcagcatcagtaacagcttca 1883

                                             
Query: 605  gttaactcacggcagtcatcgagttctgatatt 637
            |||||||||||||||||||||||||||||||||
Sbjct: 1882 gttaactcacggcagtcatcgagttctgatatt 1850



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 57/60 (95%)
 Strand = Plus / Minus

                                                                        
Query: 45   tgtacaaataaacatggaacattcacaggccctggcaggaagcagtcaacaaatatggct 104
            |||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 2443 tgtacaaataaacaaggaacattaacaggccttggcaggaagcagtcaacaaatatggct 2384



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 77/91 (84%)
 Strand = Plus / Minus

                                                                        
Query: 324  gcttcacctttcaaatatgtaccaaacattagattatcaacgcggcatgactttattcca 383
            |||||||||||| ||||||||||||| | |||||||||| | | |||  | |||||||||
Sbjct: 2150 gcttcacctttctaatatgtaccaaatagtagattatcatctcagcaccaatttattcca 2091

                                           
Query: 384  cggaaacctactagaattccaccattttcta 414
            || || |||| | ||| ||||||||||||||
Sbjct: 2090 cgaaagcctaatggaaatccaccattttcta 2060

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>dbj|AK072244.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003F07, full
            insert sequence
          Length = 3941

 Score =  256 bits (129), Expect = 8e-65
 Identities = 147/153 (96%)
 Strand = Plus / Minus

                                                                        
Query: 485  gttcaaccttcttcactgaaggcaaaaacccctccaagcatgtcgtcgttgtccccatct 544
            |||||||||||||| ||||||||||||||  | ||||||||||| ||||| |||||||||
Sbjct: 3384 gttcaaccttcttcgctgaaggcaaaaacagccccaagcatgtcatcgttatccccatct 3325

                                                                        
Query: 545  tcctcgggcttctctctctcgcagtggctgctgctgctgtcagcatcagtaacagcttca 604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3324 tcctcgggcttctctctctcgcagtggctgctgctgctgtcagcatcagtaacagcttca 3265

                                             
Query: 605  gttaactcacggcagtcatcgagttctgatatt 637
            |||||||||||||||||||||||||||||||||
Sbjct: 3264 gttaactcacggcagtcatcgagttctgatatt 3232



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 57/60 (95%)
 Strand = Plus / Minus

                                                                        
Query: 45   tgtacaaataaacatggaacattcacaggccctggcaggaagcagtcaacaaatatggct 104
            |||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 3825 tgtacaaataaacaaggaacattaacaggccttggcaggaagcagtcaacaaatatggct 3766



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 77/91 (84%)
 Strand = Plus / Minus

                                                                        
Query: 324  gcttcacctttcaaatatgtaccaaacattagattatcaacgcggcatgactttattcca 383
            |||||||||||| ||||||||||||| | |||||||||| | | |||  | |||||||||
Sbjct: 3532 gcttcacctttctaatatgtaccaaatagtagattatcatctcagcaccaatttattcca 3473

                                           
Query: 384  cggaaacctactagaattccaccattttcta 414
            || || |||| | ||| ||||||||||||||
Sbjct: 3472 cgaaagcctaatggaaatccaccattttcta 3442

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>gb|AC104708.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1174_H11,
             complete sequence
          Length = 102567

 Score =  246 bits (124), Expect = 8e-62
 Identities = 142/148 (95%)
 Strand = Plus / Minus

                                                                         
Query: 490   accttcttcactgaaggcaaaaacccctccaagcatgtcgtcgttgtccccatcttcctc 549
             ||||||||| ||||||||||||||  | ||||||||||| ||||| ||||||||||||||
Sbjct: 90028 accttcttcgctgaaggcaaaaacagccccaagcatgtcatcgttatccccatcttcctc 89969

                                                                         
Query: 550   gggcttctctctctcgcagtggctgctgctgctgtcagcatcagtaacagcttcagttaa 609
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89968 gggcttctctctctcgcagtggctgctgctgctgtcagcatcagtaacagcttcagttaa 89909

                                         
Query: 610   ctcacggcagtcatcgagttctgatatt 637
             ||||||||||||||||||||||||||||
Sbjct: 89908 ctcacggcagtcatcgagttctgatatt 89881



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 57/60 (95%)
 Strand = Plus / Minus

                                                                         
Query: 45    tgtacaaataaacatggaacattcacaggccctggcaggaagcagtcaacaaatatggct 104
             |||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 90556 tgtacaaataaacaaggaacattaacaggccttggcaggaagcagtcaacaaatatggct 90497



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 77/91 (84%)
 Strand = Plus / Minus

                                                                         
Query: 324   gcttcacctttcaaatatgtaccaaacattagattatcaacgcggcatgactttattcca 383
             |||||||||||| ||||||||||||| | |||||||||| | | |||  | |||||||||
Sbjct: 90263 gcttcacctttctaatatgtaccaaatagtagattatcatctcagcaccaatttattcca 90204

                                            
Query: 384   cggaaacctactagaattccaccattttcta 414
             || || |||| | ||| ||||||||||||||
Sbjct: 90203 cgaaagcctaatggaaatccaccattttcta 90173

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  246 bits (124), Expect = 8e-62
 Identities = 142/148 (95%)
 Strand = Plus / Minus

                                                                            
Query: 490      accttcttcactgaaggcaaaaacccctccaagcatgtcgtcgttgtccccatcttcctc 549
                ||||||||| ||||||||||||||  | ||||||||||| ||||| ||||||||||||||
Sbjct: 19630129 accttcttcgctgaaggcaaaaacagccccaagcatgtcatcgttatccccatcttcctc 19630070

                                                                            
Query: 550      gggcttctctctctcgcagtggctgctgctgctgtcagcatcagtaacagcttcagttaa 609
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19630069 gggcttctctctctcgcagtggctgctgctgctgtcagcatcagtaacagcttcagttaa 19630010

                                            
Query: 610      ctcacggcagtcatcgagttctgatatt 637
                ||||||||||||||||||||||||||||
Sbjct: 19630009 ctcacggcagtcatcgagttctgatatt 19629982



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 57/60 (95%)
 Strand = Plus / Minus

                                                                            
Query: 45       tgtacaaataaacatggaacattcacaggccctggcaggaagcagtcaacaaatatggct 104
                |||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 19630657 tgtacaaataaacaaggaacattaacaggccttggcaggaagcagtcaacaaatatggct 19630598



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 77/91 (84%)
 Strand = Plus / Minus

                                                                            
Query: 324      gcttcacctttcaaatatgtaccaaacattagattatcaacgcggcatgactttattcca 383
                |||||||||||| ||||||||||||| | |||||||||| | | |||  | |||||||||
Sbjct: 19630364 gcttcacctttctaatatgtaccaaatagtagattatcatctcagcaccaatttattcca 19630305

                                               
Query: 384      cggaaacctactagaattccaccattttcta 414
                || || |||| | ||| ||||||||||||||
Sbjct: 19630304 cgaaagcctaatggaaatccaccattttcta 19630274

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>gb|AY103798.1| Zea mays PCO149393 mRNA sequence
          Length = 988

 Score =  240 bits (121), Expect = 5e-60
 Identities = 148/157 (94%)
 Strand = Plus / Minus

                                                                       
Query: 481 gtaagttcaaccttcttcactgaaggcaaaaacccctccaagcatgtcgtcgttgtcccc 540
           |||||||||||||||||| |||| ||||||||| ||||| ||||  || ||||| |||||
Sbjct: 467 gtaagttcaaccttcttcgctgagggcaaaaactcctccgagcaaatcatcgttatcccc 408

                                                                       
Query: 541 atcttcctcgggcttctctctctcgcagtggctgctgctgctgtcagcatcagtaacagc 600
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 atcttcctcaggcttctctctctcgcagtggctgctgctgctgtcagcatcagtaacagc 348

                                                
Query: 601 ttcagttaactcacggcagtcatcgagttctgatatt 637
           |||||||||||||||||||||||||||||||||||||
Sbjct: 347 ttcagttaactcacggcagtcatcgagttctgatatt 311



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 58/62 (93%), Gaps = 1/62 (1%)
 Strand = Plus / Minus

                                                                       
Query: 43  tatgtacaaataaacatggaacattcacaggccctggcaggaagcagtcaacaaatatgg 102
           ||||||||||||||||||||||||||||||||||||||| || || ||||||||||| ||
Sbjct: 896 tatgtacaaataaacatggaacattcacaggccctggca-gaggcggtcaacaaatacgg 838

             
Query: 103 ct 104
           ||
Sbjct: 837 ct 836



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 256 gattagtaaattgcctggagggatctt 282
           ||||||||||||||||||||| |||||
Sbjct: 668 gattagtaaattgcctggaggaatctt 642



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 150 aaacaaatgggtcttacagtat 171
           ||||||||||||||||||||||
Sbjct: 785 aaacaaatgggtcttacagtat 764

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>emb|AL355852.23| Human DNA sequence from clone RP11-403E24 on chromosome X Contains gene
             FLJ39827 and a CpG island, complete sequence
          Length = 128765

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 47    tacaaataaacatggaacattcac 70
             ||||||||||||||||||||||||
Sbjct: 40824 tacaaataaacatggaacattcac 40801

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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 520     aagcatgtcgtcgttgtccccatcttc 546
               ||||||||||||||||||||| |||||
Sbjct: 2094596 aagcatgtcgtcgttgtccccttcttc 2094570

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>emb|Z83836.2|HS111J24 Human DNA sequence from clone RP1-111J24 on chromosome 22 Contains
             GSSs, complete sequence
          Length = 119008

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 49    caaataaacatggaacattcac 70
             ||||||||||||||||||||||
Sbjct: 76332 caaataaacatggaacattcac 76311

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>gb|AC113761.6| Rattus norvegicus X BAC CH230-91H16 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 232930

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 19     cctttctcttaataaaacagaa 40
              ||||||||||||||||||||||
Sbjct: 157884 cctttctcttaataaaacagaa 157905

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>gb|AC119825.11| Mus musculus chromosome 3, clone RP23-358O22, complete sequence
          Length = 205291

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 29     aataaaacagaaagtatgtac 49
              |||||||||||||||||||||
Sbjct: 193592 aataaaacagaaagtatgtac 193572

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>emb|Z75952.1|CEF29D10 Caenorhabditis elegans Cosmid F29D10, complete sequence
          Length = 23952

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 435   attgtggcaactgttctccat 455
             |||||||||||||||||||||
Sbjct: 15657 attgtggcaactgttctccat 15637

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>emb|AL122006.11|HSJ730H16 Human DNA sequence from clone RP4-730H16 on chromosome 1p13.1-13.3,
             complete sequence
          Length = 151391

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 8     ttgctagcattcctttctctt 28
             |||||||||||||||||||||
Sbjct: 81815 ttgctagcattcctttctctt 81835

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>gb|U52515.1|CEU52515 Caenorhabditis elegans class I unconventional myosin (hum-1) mRNA,
           partial cds
          Length = 3325

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 435 attgtggcaactgttctccat 455
           |||||||||||||||||||||
Sbjct: 628 attgtggcaactgttctccat 648

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>ref|NM_059992.2| Caenorhabditis elegans F29D10.4 (myosin) mRNA, complete cds
          Length = 3518

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 435 attgtggcaactgttctccat 455
           |||||||||||||||||||||
Sbjct: 817 attgtggcaactgttctccat 837

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>gb|AC096623.31| Mus musculus strain 129/SvJ chromosome 3 clone mgs1-30a13, complete
              sequence
          Length = 196824

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 29     aataaaacagaaagtatgtac 49
              |||||||||||||||||||||
Sbjct: 163854 aataaaacagaaagtatgtac 163834

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>gb|AC130969.4| Rattus norvegicus 2 BAC CH230-105B13 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 238254

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   acaaagcaaacagaaaaaag 193
             ||||||||||||||||||||
Sbjct: 34046 acaaagcaaacagaaaaaag 34027

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>gb|AC117098.6| Rattus norvegicus 2 BAC CH230-271M7 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 174234

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    acaaagcaaacagaaaaaag 193
              ||||||||||||||||||||
Sbjct: 135858 acaaagcaaacagaaaaaag 135839

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>ref|XM_757329.1| Ustilago maydis 521 hypothetical protein (UM06275.1) partial mRNA
          Length = 1206

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 564 cgcagtggctgctgctgctg 583
           ||||||||||||||||||||
Sbjct: 639 cgcagtggctgctgctgctg 620

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>emb|CR937052.2| Rattus norvegicus chromosome 1 BAC CH230-445C15, complete sequence
          Length = 151854

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     ctttctcttaataaaacaga 39
              ||||||||||||||||||||
Sbjct: 118164 ctttctcttaataaaacaga 118145

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>emb|AL390115.18| Human DNA sequence from clone RP11-479J7 on chromosome 1 Contains a
             novel gene and the 3' end of a novel gene, complete
             sequence
          Length = 102533

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   aaagcaaacagaaaaaaggc 195
             ||||||||||||||||||||
Sbjct: 22143 aaagcaaacagaaaaaaggc 22124

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>emb|AL358174.12| Human DNA sequence from clone RP11-387H19 on chromosome Xq27.1-28,
             complete sequence
          Length = 96743

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 175   caaagcaaacagaaaaaaggcaaa 198
             |||| |||||||||||||||||||
Sbjct: 26882 caaatcaaacagaaaaaaggcaaa 26905

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>emb|AL024474.1|HS91J24 Human DNA sequence from clone RP1-91J24 on chromosome 6q24 Contains a
             pseudogene similar to single-stranded DNA-binding protein,
             the 5' end of the UTRN gene for utrophin
             (dystrophin-related protein) (DRP, DRP1, DMDL) and a
             putative novel gene. Contains a CpG island, complete
             sequence
          Length = 95267

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    aataaaacagaaagtatgta 48
             ||||||||||||||||||||
Sbjct: 50667 aataaaacagaaagtatgta 50648

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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 20      ctttctcttaataaaacaga 39
               ||||||||||||||||||||
Sbjct: 2976120 ctttctcttaataaaacaga 2976139

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>gb|AC161149.6| Mus musculus BAC clone RP23-350B16 from chromosome 1, complete sequence
          Length = 217329

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   caccaaactcccttccttcc 252
             ||||||||||||||||||||
Sbjct: 90099 caccaaactcccttccttcc 90080

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>gb|AC099804.3| Homo sapiens chromosome 17, clone CTD-2357A8, complete sequence
          Length = 119922

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 503   aaggcaaaaacccctccaag 522
             ||||||||||||||||||||
Sbjct: 94691 aaggcaaaaacccctccaag 94710

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>emb|BX510316.11| Zebrafish DNA sequence from clone CH211-194J3 in linkage group 12,
             complete sequence
          Length = 189720

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    ataaaacagaaagtatgtac 49
             ||||||||||||||||||||
Sbjct: 54118 ataaaacagaaagtatgtac 54137

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>gb|AC087368.7| Homo sapiens chromosome 8, clone RP11-711G22, complete sequence
          Length = 185315

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 18     tcctttctcttaataaaaca 37
              ||||||||||||||||||||
Sbjct: 182354 tcctttctcttaataaaaca 182335

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>gb|AC009093.10| Homo sapiens chromosome 16 clone RP11-426C22, complete sequence
          Length = 207997

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 50     aaataaacatggaacattca 69
              ||||||||||||||||||||
Sbjct: 140817 aaataaacatggaacattca 140836

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>gb|AC092795.2| Homo sapiens chromosome 3 clone RP11-9J18, complete sequence
          Length = 142517

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 8    ttgctagcattcctttctct 27
            ||||||||||||||||||||
Sbjct: 7979 ttgctagcattcctttctct 7960

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>emb|BX248308.11| Zebrafish DNA sequence from clone DKEY-247M21 in linkage group 21,
             complete sequence
          Length = 171606

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    ataaaacagaaagtatgtac 49
             ||||||||||||||||||||
Sbjct: 23310 ataaaacagaaagtatgtac 23291

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>gb|AC009901.6|AC009901 Homo sapiens chromosome 8, clone RP11-98H4, complete sequence
          Length = 151966

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 18  tcctttctcttaataaaaca 37
           ||||||||||||||||||||
Sbjct: 781 tcctttctcttaataaaaca 762

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 17      ttcctttctcttaataaaacagaa 40
               ||||||||| ||||||||||||||
Sbjct: 4873655 ttcctttcttttaataaaacagaa 4873632

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>gb|AC138512.4| Homo sapiens chromosome 16 clone RP11-93B18, complete sequence
          Length = 159064

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 50     aaataaacatggaacattca 69
              ||||||||||||||||||||
Sbjct: 113198 aaataaacatggaacattca 113179

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>emb|BX649401.4| Zebrafish DNA sequence from clone DKEY-48E10 in linkage group 4, complete
              sequence
          Length = 211817

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 175    caaagcaaacagaaaaaaggcaaa 198
              |||| |||||||||||||||||||
Sbjct: 184706 caaaacaaacagaaaaaaggcaaa 184729

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>gb|AC134312.3| Homo sapiens chromosome 16 clone RP11-863P13, complete sequence
          Length = 205610

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 50     aaataaacatggaacattca 69
              ||||||||||||||||||||
Sbjct: 177456 aaataaacatggaacattca 177475

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>gb|AC021068.17|AC021068 Homo sapiens 3 BAC RP11-48O22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 159259

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      ttgctagcattcctttctct 27
              ||||||||||||||||||||
Sbjct: 145385 ttgctagcattcctttctct 145366

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>gb|AC022966.13| Homo sapiens chromosome 17, clone RP11-323N12, complete sequence
          Length = 184139

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 503  aaggcaaaaacccctccaag 522
            ||||||||||||||||||||
Sbjct: 8886 aaggcaaaaacccctccaag 8905

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>gb|AC093496.2| Homo sapiens chromosome 3 clone RP11-536I6 map 3p, complete sequence
          Length = 184041

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 175    caaagcaaacagaaaaaagg 194
              ||||||||||||||||||||
Sbjct: 163659 caaagcaaacagaaaaaagg 163678

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>gb|AC093495.2| Homo sapiens chromosome 3 clone RP11-434D12 map 3p, complete sequence
          Length = 173066

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   caaagcaaacagaaaaaagg 194
             ||||||||||||||||||||
Sbjct: 19991 caaagcaaacagaaaaaagg 20010

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>gb|AC009297.4| Homo sapiens BAC clone RP11-3E14 from 2, complete sequence
          Length = 91745

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 12    tagcattcctttctcttaataaaa 35
             |||||||| |||||||||||||||
Sbjct: 39487 tagcattcttttctcttaataaaa 39510

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>dbj|AP003510.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0528E04
          Length = 170701

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 17    ttcctttctcttaataaaacagaa 40
             ||||||||| ||||||||||||||
Sbjct: 61138 ttcctttcttttaataaaacagaa 61115

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>emb|BX248743.2| Zebrafish DNA sequence from clone CH211-202P11, complete sequence
          Length = 46051

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    ataaaacagaaagtatgtac 49
             ||||||||||||||||||||
Sbjct: 22821 ataaaacagaaagtatgtac 22802

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>emb|BX324122.17| Mouse DNA sequence from clone RP23-317B9 on chromosome X, complete
            sequence
          Length = 104805

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 8    ttgctagcattcctttctct 27
            ||||||||||||||||||||
Sbjct: 3357 ttgctagcattcctttctct 3338

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>emb|AL808014.8| Mouse DNA sequence from clone RP23-142A6 on chromosome X, complete
             sequence
          Length = 138307

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 42    gtatgtacaaataaacatggaaca 65
             ||||| ||||||||||||||||||
Sbjct: 96914 gtatgaacaaataaacatggaaca 96891

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>gb|AF125353.1|F125350S04 Homo sapiens cytohesin 1 gene, exon 5
          Length = 351

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 503 aaggcaaaaacccctccaag 522
           ||||||||||||||||||||
Sbjct: 351 aaggcaaaaacccctccaag 332

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>emb|Z57405.1|HS175B11R H.sapiens CpG island DNA genomic Mse1 fragment, clone 175b11,
           reverse read cpg175b11.rt1a
          Length = 152

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 29  aataaaacagaaagtatgta 48
           ||||||||||||||||||||
Sbjct: 136 aataaaacagaaagtatgta 117

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>emb|BX547928.7| Zebrafish DNA sequence from clone DKEY-172O10 in linkage group 4,
             complete sequence
          Length = 228177

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 175   caaagcaaacagaaaaaaggcaaa 198
             |||| |||||||||||||||||||
Sbjct: 27100 caaaacaaacagaaaaaaggcaaa 27077

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>emb|CT806423.2| Pan troglodytes chromosome X clone CH251-25B01 map Xq28, complete
             sequence
          Length = 220032

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 175   caaagcaaacagaaaaaaggcaaa 198
             |||| |||||||||||||||||||
Sbjct: 25806 caaatcaaacagaaaaaaggcaaa 25829

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>emb|AL110505.5|CNS01DRA Human chromosome 14 DNA sequence BAC R-816J8 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 198441

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 81     aggaagcagtcaacaaatat 100
              ||||||||||||||||||||
Sbjct: 151811 aggaagcagtcaacaaatat 151792

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>emb|AJ495848.1|PLI495848 Paracentrotus lividus partial dnmt1 gene for DNA methyltransferase,
            exons 13-15
          Length = 5059

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 22   ttctcttaataaaacagaaa 41
            ||||||||||||||||||||
Sbjct: 1604 ttctcttaataaaacagaaa 1585

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>gb|AC113087.11| Mus musculus chromosome 14, clone RP23-293A2, complete sequence
          Length = 166952

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 176    aaagcaaacagaaaaaaggcaaag 199
              |||||||||||| |||||||||||
Sbjct: 140223 aaagcaaacagacaaaaggcaaag 140200

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>dbj|AP005208.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-138C24, complete
             sequence
          Length = 171454

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   caaagcaaacagaaaaaagg 194
             ||||||||||||||||||||
Sbjct: 49548 caaagcaaacagaaaaaagg 49529

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>gb|AC133168.3| Mus musculus BAC clone RP24-217I2 from 1, complete sequence
          Length = 169783

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 233    caccaaactcccttccttcc 252
              ||||||||||||||||||||
Sbjct: 167061 caccaaactcccttccttcc 167042

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>emb|AL807800.7| Mouse DNA sequence from clone RP23-438D2 on chromosome 2, complete
              sequence
          Length = 176808

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 501    tgaaggcaaaaacccctcca 520
              ||||||||||||||||||||
Sbjct: 148283 tgaaggcaaaaacccctcca 148302

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>emb|AL772296.6| Mouse DNA sequence from clone RP23-66O9 on chromosome 4, complete
             sequence
          Length = 191662

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    ctttctcttaataaaacaga 39
             ||||||||||||||||||||
Sbjct: 23225 ctttctcttaataaaacaga 23206

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>emb|AL670230.12| Mouse DNA sequence from clone RP23-15D12 on chromosome X, complete
              sequence
          Length = 207966

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 322    atgcttcacctttcaaatatgtac 345
              |||||||||||||||||| |||||
Sbjct: 126118 atgcttcacctttcaaatgtgtac 126141


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,550,715
Number of Sequences: 3902068
Number of extensions: 7550715
Number of successful extensions: 177067
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 176753
Number of HSP's gapped (non-prelim): 309
length of query: 637
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 614
effective length of database: 17,143,297,704
effective search space: 10525984790256
effective search space used: 10525984790256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result