ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9j07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1T2M4_METJA (Q58723) Type II restriction enzyme MjaIV (EC 3.1.21.... 32 2.5
2TFR1_MOUSE (Q62351) Transferrin receptor protein 1 (TfR1) (TR) (... 31 4.2
3GR85A_DROME (Q8INM9) Putative gustatory receptor 85a 31 4.2
4G7AC_BREDI (Q9L5D6) Glutaryl-7-aminocephalosporanic-acid acylase... 30 9.4

>T2M4_METJA (Q58723) Type II restriction enzyme MjaIV (EC 3.1.21.4)|
           (Endonuclease MjaIV) (R.MjaIV)
          Length = 245

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 484 LKQYNV*ESNFKISPLEPRGLIGFTLRRHTPFEIVCDRI--GTHFLHF 621
           LK Y + E N KI   EP+  I     R TP++++C  I  G +FL F
Sbjct: 47  LKDYTISEENLKIKFSEPKDEIYSYEGRRTPYDLLCYGIINGKNFLIF 94



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>TFR1_MOUSE (Q62351) Transferrin receptor protein 1 (TfR1) (TR) (TfR) (Trfr)|
          Length = 763

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
 Frame = +1

Query: 403 IKNKFHKFSFTNVQKLI*VIKICVWFHLKQ--YNV*ESNFKISPLE-PRGLIGFTLRRHT 573
           I+N+FH+F F+ V +    +KI V   + Q    + +SN  + P+E P G + F+     
Sbjct: 171 IENQFHEFKFSKVWRDEHYVKIQVKSSIGQNMVTIVQSNGNLDPVESPEGYVAFSKPTEV 230

Query: 574 PFEIVCDRIGTHFLHFXLVLSVTCAISSVR 663
             ++V    GT      L  SV  ++  VR
Sbjct: 231 SGKLVHANFGTKKDFEELSYSVNGSLVIVR 260



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>GR85A_DROME (Q8INM9) Putative gustatory receptor 85a|
          Length = 397

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 365 HTFQLFYSTLEKLSTYFDYFIQIHKSTL-*ISYFTYTRLLFQLFKKNTSSNYSTQ 204
           H F +   TL+ L  + D+F  I  STL  +++FTY  L+F     +  S Y  Q
Sbjct: 64  HNFAVISLTLKFLFDFTDHFKYIESSTLITVNFFTYFTLVFFALLSSMGSCYQWQ 118



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>G7AC_BREDI (Q9L5D6) Glutaryl-7-aminocephalosporanic-acid acylase precursor (EC|
           3.5.1.93) (Glutaryl-7-ACA-acylase)
           (7-beta-(4-carboxybutanamido)cephalosporanic acid
           acylase)
          Length = 720

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 8/35 (22%), Positives = 24/35 (68%)
 Frame = -3

Query: 295 IKVHFELVISHTLDSYSSYLRKIQVPTIPLNFREK 191
           ++ +F+++ +H+ D Y + + ++QVPT  + + ++
Sbjct: 348 LEQYFDMITAHSFDDYEAAMARMQVPTFNIVYADR 382


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,292,707
Number of Sequences: 219361
Number of extensions: 2004048
Number of successful extensions: 3852
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3852
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7082949625
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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