>RS8_ORYSA (P49199) 40S ribosomal protein S8|
          Length = 220

 Score = 68.6 bits (166), Expect = 4e-12
 Identities = 33/40 (82%), Positives = 34/40 (85%)
 Frame = -3

Query: 241 EQFXGGRLLACISSRPGQCGRADGXILEGKXLEXDMRKLQ 122
           EQF  GRLLACISSRPGQCGRADG ILEGK LE  M+KLQ
Sbjct: 172 EQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQ 211

>RS8_PRUAR (O81361) 40S ribosomal protein S8|
          Length = 221

 Score = 68.6 bits (166), Expect = 4e-12
 Identities = 32/40 (80%), Positives = 35/40 (87%)
 Frame = -3

Query: 241 EQFXGGRLLACISSRPGQCGRADGXILEGKXLEXDMRKLQ 122
           EQF GG+LLACISSRPGQCG+ADG ILEGK LE  M+KLQ
Sbjct: 171 EQFGGGKLLACISSRPGQCGKADGDILEGKELEFYMKKLQ 210

>RS8_MAIZE (Q08069) 40S ribosomal protein S8|
          Length = 221

 Score = 68.6 bits (166), Expect = 4e-12
 Identities = 33/40 (82%), Positives = 34/40 (85%)
 Frame = -3

Query: 241 EQFXGGRLLACISSRPGQCGRADGXILEGKXLEXDMRKLQ 122
           EQF  GRLLACISSRPGQCGRADG ILEGK LE  M+KLQ
Sbjct: 173 EQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQ 212

>RS8_ARATH (Q9FIF3) 40S ribosomal protein S8|
          Length = 210

 Score = 67.8 bits (164), Expect = 7e-12
 Identities = 32/40 (80%), Positives = 34/40 (85%)
 Frame = -3

Query: 241 EQFXGGRLLACISSRPGQCGRADGXILEGKXLEXDMRKLQ 122
           EQF  GRLLACI+SRPGQCGRADG ILEGK LE  M+KLQ
Sbjct: 161 EQFSSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQ 200

>RS8_SPOFR (Q8WQI5) 40S ribosomal protein S8|
          Length = 208

 Score = 63.9 bits (154), Expect = 1e-10
 Identities = 29/40 (72%), Positives = 34/40 (85%)
 Frame = -3

Query: 241 EQFXGGRLLACISSRPGQCGRADGXILEGKXLEXDMRKLQ 122
           EQF  GRLLAC++SRPGQCGRADG ILEGK LE  +RK++
Sbjct: 164 EQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIK 203

>RS8_ICTPU (Q90YR6) 40S ribosomal protein S8|
          Length = 207

 Score = 63.9 bits (154), Expect = 1e-10
 Identities = 29/40 (72%), Positives = 34/40 (85%)
 Frame = -3

Query: 241 EQFXGGRLLACISSRPGQCGRADGXILEGKXLEXDMRKLQ 122
           EQF  G+LLACISSRPGQCGRADG +LEGK LE  +RK++
Sbjct: 163 EQFQQGKLLACISSRPGQCGRADGYVLEGKELEFYLRKIK 202

>RS8_BRARE (P62247) 40S ribosomal protein S8|
          Length = 207

 Score = 63.9 bits (154), Expect = 1e-10
 Identities = 29/40 (72%), Positives = 34/40 (85%)
 Frame = -3

Query: 241 EQFXGGRLLACISSRPGQCGRADGXILEGKXLEXDMRKLQ 122
           EQF  G+LLACISSRPGQCGRADG +LEGK LE  +RK++
Sbjct: 163 EQFLQGKLLACISSRPGQCGRADGYVLEGKELEFYLRKIK 202

>RS8_XENLA (Q7SYU0) 40S ribosomal protein S8|
          Length = 207

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 28/40 (70%), Positives = 34/40 (85%)
 Frame = -3

Query: 241 EQFXGGRLLACISSRPGQCGRADGXILEGKXLEXDMRKLQ 122
           EQF  G+LLACI+SRPGQCGRADG +LEGK LE  +RK++
Sbjct: 163 EQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIK 202

>RS8_RAT (P62243) 40S ribosomal protein S8|
          Length = 207

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 28/40 (70%), Positives = 34/40 (85%)
 Frame = -3

Query: 241 EQFXGGRLLACISSRPGQCGRADGXILEGKXLEXDMRKLQ 122
           EQF  G+LLACI+SRPGQCGRADG +LEGK LE  +RK++
Sbjct: 163 EQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIK 202

>RS8_MOUSE (P62242) 40S ribosomal protein S8|
          Length = 207

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 28/40 (70%), Positives = 34/40 (85%)
 Frame = -3

Query: 241 EQFXGGRLLACISSRPGQCGRADGXILEGKXLEXDMRKLQ 122
           EQF  G+LLACI+SRPGQCGRADG +LEGK LE  +RK++
Sbjct: 163 EQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIK 202

>RS8_MACFA (Q4R6P8) 40S ribosomal protein S8|
          Length = 207

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 28/40 (70%), Positives = 34/40 (85%)
 Frame = -3

Query: 241 EQFXGGRLLACISSRPGQCGRADGXILEGKXLEXDMRKLQ 122
           EQF  G+LLACI+SRPGQCGRADG +LEGK LE  +RK++
Sbjct: 163 EQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIK 202

>RS8_HUMAN (P62241) 40S ribosomal protein S8|
          Length = 207

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 28/40 (70%), Positives = 34/40 (85%)
 Frame = -3

Query: 241 EQFXGGRLLACISSRPGQCGRADGXILEGKXLEXDMRKLQ 122
           EQF  G+LLACI+SRPGQCGRADG +LEGK LE  +RK++
Sbjct: 163 EQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIK 202

>RS8_BOVIN (Q5E958) 40S ribosomal protein S8|
          Length = 207

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 28/40 (70%), Positives = 34/40 (85%)
 Frame = -3

Query: 241 EQFXGGRLLACISSRPGQCGRADGXILEGKXLEXDMRKLQ 122
           EQF  G+LLACI+SRPGQCGRADG +LEGK LE  +RK++
Sbjct: 163 EQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIK 202

>RS8_APIME (O76756) 40S ribosomal protein S8|
          Length = 207

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 29/40 (72%), Positives = 33/40 (82%)
 Frame = -3

Query: 241 EQFXGGRLLACISSRPGQCGRADGXILEGKXLEXDMRKLQ 122
           EQF  GR+LACISSRPGQCGR DG ILEGK LE  MR+++
Sbjct: 163 EQFATGRVLACISSRPGQCGREDGYILEGKELEFYMRRIK 202

>RS8_DROME (Q8MLY8) 40S ribosomal protein S8|
          Length = 208

 Score = 62.4 bits (150), Expect = 3e-10
 Identities = 27/40 (67%), Positives = 34/40 (85%)
 Frame = -3

Query: 241 EQFXGGRLLACISSRPGQCGRADGXILEGKXLEXDMRKLQ 122
           +QF  GR+LACISSRPGQCGR+DG ILEGK LE  ++K++
Sbjct: 166 DQFTSGRILACISSRPGQCGRSDGYILEGKELEFYLKKIK 205

>RS8_THEAN (Q4UFS9) 40S ribosomal protein S8|
          Length = 184

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 26/39 (66%), Positives = 30/39 (76%)
 Frame = -3

Query: 241 EQFXGGRLLACISSRPGQCGRADGXILEGKXLEXDMRKL 125
           EQF  GRLLACISSRPGQCGR DG +LEG+ L    R++
Sbjct: 140 EQFSSGRLLACISSRPGQCGRCDGYVLEGEELNFYRRRM 178

>RS8_THEPA (Q4N3P0) 40S ribosomal protein S8|
          Length = 188

 Score = 57.4 bits (137), Expect = 1e-08
 Identities = 25/39 (64%), Positives = 30/39 (76%)
 Frame = -3

Query: 241 EQFXGGRLLACISSRPGQCGRADGXILEGKXLEXDMRKL 125
           +QF  GRLLACISSRPGQCGR DG +LEG+ L    R++
Sbjct: 144 DQFSSGRLLACISSRPGQCGRCDGYVLEGEELNFYRRRM 182

>RS8_YEAST (P05754) 40S ribosomal protein S8 (S14) (YS9) (RP19)|
          Length = 199

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 25/38 (65%), Positives = 28/38 (73%)
 Frame = -3

Query: 238 QFXGGRLLACISSRPGQCGRADGXILEGKXLEXDMRKL 125
           QF  GRL ACISSRPGQ GR DG ILEG+ L   +R+L
Sbjct: 158 QFSAGRLYACISSRPGQSGRCDGYILEGEELAFYLRRL 195

>RS8_CAEEL (P48156) 40S ribosomal protein S8|
          Length = 208

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 25/40 (62%), Positives = 31/40 (77%)
 Frame = -3

Query: 241 EQFXGGRLLACISSRPGQCGRADGXILEGKXLEXDMRKLQ 122
           EQF  GRLLA ISS PGQ G+A+G ILEGK L+  +RK++
Sbjct: 164 EQFNTGRLLARISSSPGQVGQANGYILEGKELDFYLRKIR 203

>RS8_GRIJA (Q9ZT56) 40S ribosomal protein S8|
          Length = 204

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 24/40 (60%), Positives = 28/40 (70%)
 Frame = -3

Query: 241 EQFXGGRLLACISSRPGQCGRADGXILEGKXLEXDMRKLQ 122
           E F  GRL A I+SRPGQ GRADG +LEGK LE   + +Q
Sbjct: 157 ELFQSGRLYASIASRPGQSGRADGYLLEGKELEFYAKAMQ 196

>RS8B_SCHPO (Q9P7B2) 40S ribosomal protein S8-B|
          Length = 200

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 22/38 (57%), Positives = 27/38 (71%)
 Frame = -3

Query: 238 QFXGGRLLACISSRPGQCGRADGXILEGKXLEXDMRKL 125
           QF  GRL A +SSRPGQ GR DG ILEG+ L   +R++
Sbjct: 159 QFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRM 196

>RS8A_SCHPO (O14049) 40S ribosomal protein S8-A|
          Length = 200

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 22/38 (57%), Positives = 27/38 (71%)
 Frame = -3

Query: 238 QFXGGRLLACISSRPGQCGRADGXILEGKXLEXDMRKL 125
           QF  GRL A +SSRPGQ GR DG ILEG+ L   +R++
Sbjct: 159 QFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRM 196

>RS8_LEIMA (P25204) 40S ribosomal protein S8|
          Length = 220

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 21/40 (52%), Positives = 30/40 (75%)
 Frame = -3

Query: 241 EQFXGGRLLACISSRPGQCGRADGXILEGKXLEXDMRKLQ 122
           +Q   GR+LA I+SRPGQ GRADG +LEG  L+  +++L+
Sbjct: 177 DQLREGRVLARITSRPGQSGRADGILLEGAELQFYLKRLE 216


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,113,751
Number of Sequences: 219361
Number of extensions: 185990
Number of successful extensions: 488
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 80,573,946
effective HSP length: 56
effective length of database: 68,289,730
effective search space used: 1638953520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)