ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9i21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT016329.1| Zea mays clone Contig162 mRNA sequence 84 4e-14
2gb|AY106442.1| Zea mays PCO078493 mRNA sequence 84 4e-14
3gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome... 56 9e-06
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-06
5dbj|AK100226.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-06
6dbj|AK099007.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-06
7dbj|AK061566.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-06
8ref|XM_475674.1| Oryza sativa (japonica cultivar-group), predic... 38 2.1
9gb|DQ017376.1| Dioscorea zingiberensis cycloartenol synthase (CS... 38 2.1
10emb|AL163052.4|CNS01RIB Human chromosome 14 DNA sequence BAC R-7... 38 2.1
11gb|AY438651.1| Aeromonas hydrophila putative ADP-L-glycero-D-man... 36 8.2
12emb|AL627311.16| Human DNA sequence from clone RP11-487E1 on chr... 36 8.2
13gb|AC027678.11| Homo sapiens chromosome 10 clone RP11-97A17, com... 36 8.2
14gb|AC090260.13| Homo sapiens chromosome 15, clone RP11-285A1, co... 36 8.2

>gb|BT016329.1| Zea mays clone Contig162 mRNA sequence
          Length = 1199

 Score = 83.8 bits (42), Expect = 4e-14
 Identities = 50/53 (94%)
 Strand = Plus / Minus

                                                                
Query: 4   aagcaaacctngcaggcatccagatccctgcatgggggaggttttggctctcc 56
           |||||||||| |||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 909 aagcaaacctagcaggcatccagatccctgcatggaggaggtttcggctctcc 857



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>gb|AY106442.1| Zea mays PCO078493 mRNA sequence
          Length = 1289

 Score = 83.8 bits (42), Expect = 4e-14
 Identities = 50/53 (94%)
 Strand = Plus / Minus

                                                                
Query: 4   aagcaaacctngcaggcatccagatccctgcatgggggaggttttggctctcc 56
           |||||||||| |||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 917 aagcaaacctagcaggcatccagatccctgcatggaggaggtttcggctctcc 865



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>gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0108E17, complete sequence
          Length = 139829

 Score = 56.0 bits (28), Expect = 9e-06
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                
Query: 3     aaagcaaacctngcaggcatccagatccctgcatgggggaggttttggctc 53
             ||||||||||| ||| ||||| ||||||||||| || |||||||| |||||
Sbjct: 86071 aaagcaaacctagcaagcatctagatccctgcacggaggaggtttcggctc 86021



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 56.0 bits (28), Expect = 9e-06
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                   
Query: 3        aaagcaaacctngcaggcatccagatccctgcatgggggaggttttggctc 53
                ||||||||||| ||| ||||| ||||||||||| || |||||||| |||||
Sbjct: 25017218 aaagcaaacctagcaagcatctagatccctgcacggaggaggtttcggctc 25017168



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>dbj|AK100226.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048E09, full
           insert sequence
          Length = 1120

 Score = 56.0 bits (28), Expect = 9e-06
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 3   aaagcaaacctngcaggcatccagatccctgcatgggggaggttttggctc 53
           ||||||||||| ||| ||||| ||||||||||| || |||||||| |||||
Sbjct: 885 aaagcaaacctagcaagcatctagatccctgcacggaggaggtttcggctc 835



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>dbj|AK099007.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114B12, full
           insert sequence
          Length = 1147

 Score = 56.0 bits (28), Expect = 9e-06
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 3   aaagcaaacctngcaggcatccagatccctgcatgggggaggttttggctc 53
           ||||||||||| ||| ||||| ||||||||||| || |||||||| |||||
Sbjct: 887 aaagcaaacctagcaagcatctagatccctgcacggaggaggtttcggctc 837



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>dbj|AK061566.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-E10, full
           insert sequence
          Length = 1219

 Score = 56.0 bits (28), Expect = 9e-06
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 3   aaagcaaacctngcaggcatccagatccctgcatgggggaggttttggctc 53
           ||||||||||| ||| ||||| ||||||||||| || |||||||| |||||
Sbjct: 890 aaagcaaacctagcaagcatctagatccctgcacggaggaggtttcggctc 840



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>ref|XM_475674.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 825

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                              
Query: 19  gcatccagatccctgcatgggggaggttttggctc 53
           ||||| ||||||||||| || |||||||| |||||
Sbjct: 818 gcatctagatccctgcacggaggaggtttcggctc 784



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>gb|DQ017376.1| Dioscorea zingiberensis cycloartenol synthase (CS) mRNA, partial
          cds
          Length = 1245

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 33 gcatgggggaggttttggctctc 55
          |||||||||| ||||||||||||
Sbjct: 73 gcatgggggaagttttggctctc 95



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>emb|AL163052.4|CNS01RIB Human chromosome 14 DNA sequence BAC R-769B21 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 181905

 Score = 38.2 bits (19), Expect = 2.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 39   gggaggttttggctctcct 57
            |||||||||||||||||||
Sbjct: 4268 gggaggttttggctctcct 4250



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>gb|AY438651.1| Aeromonas hydrophila putative ADP-L-glycero-D-manno-heptose (gmhD)
            gene, partial cds; putative glycosyltransferase (wavL),
            putative O-antigen ligase (waaL), putative LPS
            biosynthesis protein, putative heptosyltransferase III
            (waaQ), putative D-glycero-D-manno-heptosyltransferase,
            and putative ADP-heptose:LPS genes, complete cds; and
            putative ferric siderophore receptor gene, partial cds
          Length = 8927

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                 
Query: 10   acctngcaggcatccagatcc 30
            |||| ||||||||||||||||
Sbjct: 1168 acctggcaggcatccagatcc 1148



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>emb|AL627311.16| Human DNA sequence from clone RP11-487E1 on chromosome 1 Contains part
             of the EIF4G3 gene for  eukaryotic translation initiation
             factor 4 gamma, 3, a ribosomal protein S15a (RPS15A)
             pseudogene and a pseudogene similar to part of ribosomal
             protein L34 (RPL34), complete sequence
          Length = 169173

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 33    gcatgggggaggttttgg 50
             ||||||||||||||||||
Sbjct: 10068 gcatgggggaggttttgg 10051



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>gb|AC027678.11| Homo sapiens chromosome 10 clone RP11-97A17, complete sequence
          Length = 150468

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 36     tgggggaggttttggctctcct 57
              |||||||||||||| |||||||
Sbjct: 112006 tgggggaggttttgtctctcct 111985



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>gb|AC090260.13| Homo sapiens chromosome 15, clone RP11-285A1, complete sequence
          Length = 207206

 Score = 36.2 bits (18), Expect = 8.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 27    atccctgcatgggggagg 44
             ||||||||||||||||||
Sbjct: 22568 atccctgcatgggggagg 22585


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 351,278
Number of Sequences: 3902068
Number of extensions: 351278
Number of successful extensions: 21970
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21951
Number of HSP's gapped (non-prelim): 19
length of query: 58
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 37
effective length of database: 17,151,101,840
effective search space: 634590768080
effective search space used: 634590768080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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