Clone Name | rbags9i21 |
---|---|
Clone Library Name | barley_pub |
>gb|BT016329.1| Zea mays clone Contig162 mRNA sequence Length = 1199 Score = 83.8 bits (42), Expect = 4e-14 Identities = 50/53 (94%) Strand = Plus / Minus Query: 4 aagcaaacctngcaggcatccagatccctgcatgggggaggttttggctctcc 56 |||||||||| |||||||||||||||||||||||| |||||||| |||||||| Sbjct: 909 aagcaaacctagcaggcatccagatccctgcatggaggaggtttcggctctcc 857
>gb|AY106442.1| Zea mays PCO078493 mRNA sequence Length = 1289 Score = 83.8 bits (42), Expect = 4e-14 Identities = 50/53 (94%) Strand = Plus / Minus Query: 4 aagcaaacctngcaggcatccagatccctgcatgggggaggttttggctctcc 56 |||||||||| |||||||||||||||||||||||| |||||||| |||||||| Sbjct: 917 aagcaaacctagcaggcatccagatccctgcatggaggaggtttcggctctcc 865
>gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0108E17, complete sequence Length = 139829 Score = 56.0 bits (28), Expect = 9e-06 Identities = 45/51 (88%) Strand = Plus / Minus Query: 3 aaagcaaacctngcaggcatccagatccctgcatgggggaggttttggctc 53 ||||||||||| ||| ||||| ||||||||||| || |||||||| ||||| Sbjct: 86071 aaagcaaacctagcaagcatctagatccctgcacggaggaggtttcggctc 86021
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 56.0 bits (28), Expect = 9e-06 Identities = 45/51 (88%) Strand = Plus / Minus Query: 3 aaagcaaacctngcaggcatccagatccctgcatgggggaggttttggctc 53 ||||||||||| ||| ||||| ||||||||||| || |||||||| ||||| Sbjct: 25017218 aaagcaaacctagcaagcatctagatccctgcacggaggaggtttcggctc 25017168
>dbj|AK100226.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048E09, full insert sequence Length = 1120 Score = 56.0 bits (28), Expect = 9e-06 Identities = 45/51 (88%) Strand = Plus / Minus Query: 3 aaagcaaacctngcaggcatccagatccctgcatgggggaggttttggctc 53 ||||||||||| ||| ||||| ||||||||||| || |||||||| ||||| Sbjct: 885 aaagcaaacctagcaagcatctagatccctgcacggaggaggtttcggctc 835
>dbj|AK099007.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114B12, full insert sequence Length = 1147 Score = 56.0 bits (28), Expect = 9e-06 Identities = 45/51 (88%) Strand = Plus / Minus Query: 3 aaagcaaacctngcaggcatccagatccctgcatgggggaggttttggctc 53 ||||||||||| ||| ||||| ||||||||||| || |||||||| ||||| Sbjct: 887 aaagcaaacctagcaagcatctagatccctgcacggaggaggtttcggctc 837
>dbj|AK061566.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-E10, full insert sequence Length = 1219 Score = 56.0 bits (28), Expect = 9e-06 Identities = 45/51 (88%) Strand = Plus / Minus Query: 3 aaagcaaacctngcaggcatccagatccctgcatgggggaggttttggctc 53 ||||||||||| ||| ||||| ||||||||||| || |||||||| ||||| Sbjct: 890 aaagcaaacctagcaagcatctagatccctgcacggaggaggtttcggctc 840
>ref|XM_475674.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 825 Score = 38.2 bits (19), Expect = 2.1 Identities = 31/35 (88%) Strand = Plus / Minus Query: 19 gcatccagatccctgcatgggggaggttttggctc 53 ||||| ||||||||||| || |||||||| ||||| Sbjct: 818 gcatctagatccctgcacggaggaggtttcggctc 784
>gb|DQ017376.1| Dioscorea zingiberensis cycloartenol synthase (CS) mRNA, partial cds Length = 1245 Score = 38.2 bits (19), Expect = 2.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 33 gcatgggggaggttttggctctc 55 |||||||||| |||||||||||| Sbjct: 73 gcatgggggaagttttggctctc 95
>emb|AL163052.4|CNS01RIB Human chromosome 14 DNA sequence BAC R-769B21 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 181905 Score = 38.2 bits (19), Expect = 2.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 39 gggaggttttggctctcct 57 ||||||||||||||||||| Sbjct: 4268 gggaggttttggctctcct 4250
>gb|AY438651.1| Aeromonas hydrophila putative ADP-L-glycero-D-manno-heptose (gmhD) gene, partial cds; putative glycosyltransferase (wavL), putative O-antigen ligase (waaL), putative LPS biosynthesis protein, putative heptosyltransferase III (waaQ), putative D-glycero-D-manno-heptosyltransferase, and putative ADP-heptose:LPS genes, complete cds; and putative ferric siderophore receptor gene, partial cds Length = 8927 Score = 36.2 bits (18), Expect = 8.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 10 acctngcaggcatccagatcc 30 |||| |||||||||||||||| Sbjct: 1168 acctggcaggcatccagatcc 1148
>emb|AL627311.16| Human DNA sequence from clone RP11-487E1 on chromosome 1 Contains part of the EIF4G3 gene for eukaryotic translation initiation factor 4 gamma, 3, a ribosomal protein S15a (RPS15A) pseudogene and a pseudogene similar to part of ribosomal protein L34 (RPL34), complete sequence Length = 169173 Score = 36.2 bits (18), Expect = 8.2 Identities = 18/18 (100%) Strand = Plus / Minus Query: 33 gcatgggggaggttttgg 50 |||||||||||||||||| Sbjct: 10068 gcatgggggaggttttgg 10051
>gb|AC027678.11| Homo sapiens chromosome 10 clone RP11-97A17, complete sequence Length = 150468 Score = 36.2 bits (18), Expect = 8.2 Identities = 21/22 (95%) Strand = Plus / Minus Query: 36 tgggggaggttttggctctcct 57 |||||||||||||| ||||||| Sbjct: 112006 tgggggaggttttgtctctcct 111985
>gb|AC090260.13| Homo sapiens chromosome 15, clone RP11-285A1, complete sequence Length = 207206 Score = 36.2 bits (18), Expect = 8.2 Identities = 18/18 (100%) Strand = Plus / Plus Query: 27 atccctgcatgggggagg 44 |||||||||||||||||| Sbjct: 22568 atccctgcatgggggagg 22585 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 351,278 Number of Sequences: 3902068 Number of extensions: 351278 Number of successful extensions: 21970 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 21951 Number of HSP's gapped (non-prelim): 19 length of query: 58 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 37 effective length of database: 17,151,101,840 effective search space: 634590768080 effective search space used: 634590768080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)