ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags9i04 |
|---|---|
| Clone Library Name | barley_pub |
>RS23_SPOFR (Q962Q7) 40S ribosomal protein S23| Length = 143 Score = 38.1 bits (87), Expect = 0.006 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -3 Query: 228 AGFGRKGHAVGDIPGXR 178 AGFGRKGHAVGDIPG R Sbjct: 103 AGFGRKGHAVGDIPGVR 119
>RS23_PAPDA (Q6EV23) 40S ribosomal protein S23| Length = 143 Score = 38.1 bits (87), Expect = 0.006 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -3 Query: 228 AGFGRKGHAVGDIPGXR 178 AGFGRKGHAVGDIPG R Sbjct: 103 AGFGRKGHAVGDIPGVR 119
>RS23_LUMRU (Q9GRJ3) 40S ribosomal protein S23| Length = 143 Score = 38.1 bits (87), Expect = 0.006 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -3 Query: 228 AGFGRKGHAVGDIPGXR 178 AGFGRKGHAVGDIPG R Sbjct: 103 AGFGRKGHAVGDIPGVR 119
>RS23_ICTPU (Q90YQ1) 40S ribosomal protein S23| Length = 143 Score = 38.1 bits (87), Expect = 0.006 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -3 Query: 228 AGFGRKGHAVGDIPGXR 178 AGFGRKGHAVGDIPG R Sbjct: 103 AGFGRKGHAVGDIPGVR 119
>RS23_DROME (Q8T3U2) 40S ribosomal protein S23| Length = 143 Score = 38.1 bits (87), Expect = 0.006 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -3 Query: 228 AGFGRKGHAVGDIPGXR 178 AGFGRKGHAVGDIPG R Sbjct: 103 AGFGRKGHAVGDIPGVR 119
>RS23_DERVA (Q86FP7) 40S ribosomal protein S23| Length = 143 Score = 38.1 bits (87), Expect = 0.006 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -3 Query: 228 AGFGRKGHAVGDIPGXR 178 AGFGRKGHAVGDIPG R Sbjct: 103 AGFGRKGHAVGDIPGVR 119
>RS23_CHILA (P62298) 40S ribosomal protein S23| Length = 143 Score = 38.1 bits (87), Expect = 0.006 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -3 Query: 228 AGFGRKGHAVGDIPGXR 178 AGFGRKGHAVGDIPG R Sbjct: 103 AGFGRKGHAVGDIPGVR 119
>RS23_BRUMA (P90707) 40S ribosomal protein S23| Length = 143 Score = 38.1 bits (87), Expect = 0.006 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -3 Query: 228 AGFGRKGHAVGDIPGXR 178 AGFGRKGHAVGDIPG R Sbjct: 103 AGFGRKGHAVGDIPGVR 119
>RS23_RAT (P62268) 40S ribosomal protein S23| Length = 142 Score = 38.1 bits (87), Expect = 0.006 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -3 Query: 228 AGFGRKGHAVGDIPGXR 178 AGFGRKGHAVGDIPG R Sbjct: 102 AGFGRKGHAVGDIPGVR 118
>RS23_PIG (Q6SA96) 40S ribosomal protein S23| Length = 142 Score = 38.1 bits (87), Expect = 0.006 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -3 Query: 228 AGFGRKGHAVGDIPGXR 178 AGFGRKGHAVGDIPG R Sbjct: 102 AGFGRKGHAVGDIPGVR 118
>RS23_MOUSE (P62267) 40S ribosomal protein S23| Length = 142 Score = 38.1 bits (87), Expect = 0.006 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -3 Query: 228 AGFGRKGHAVGDIPGXR 178 AGFGRKGHAVGDIPG R Sbjct: 102 AGFGRKGHAVGDIPGVR 118
>RS23_HUMAN (P62266) 40S ribosomal protein S23| Length = 142 Score = 38.1 bits (87), Expect = 0.006 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -3 Query: 228 AGFGRKGHAVGDIPGXR 178 AGFGRKGHAVGDIPG R Sbjct: 102 AGFGRKGHAVGDIPGVR 118
>RS23_FRAAN (P46297) 40S ribosomal protein S23 (S12)| Length = 142 Score = 38.1 bits (87), Expect = 0.006 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -3 Query: 228 AGFGRKGHAVGDIPGXR 178 AGFGRKGHAVGDIPG R Sbjct: 102 AGFGRKGHAVGDIPGVR 118
>RS23_EUPES (Q9M5Z9) 40S ribosomal protein S23| Length = 142 Score = 38.1 bits (87), Expect = 0.006 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -3 Query: 228 AGFGRKGHAVGDIPGXR 178 AGFGRKGHAVGDIPG R Sbjct: 102 AGFGRKGHAVGDIPGVR 118
>RS23B_ARATH (P49201) 40S ribosomal protein S23-2 (S12)| Length = 142 Score = 38.1 bits (87), Expect = 0.006 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -3 Query: 228 AGFGRKGHAVGDIPGXR 178 AGFGRKGHAVGDIPG R Sbjct: 102 AGFGRKGHAVGDIPGVR 118
>RS23A_ARATH (Q9SF35) 40S ribosomal protein S23-1 (S12)| Length = 142 Score = 38.1 bits (87), Expect = 0.006 Identities = 16/17 (94%), Positives = 16/17 (94%) Frame = -3 Query: 228 AGFGRKGHAVGDIPGXR 178 AGFGRKGHAVGDIPG R Sbjct: 102 AGFGRKGHAVGDIPGVR 118
>RS23_CIOIN (Q8I7D5) 40S ribosomal protein S23| Length = 143 Score = 36.2 bits (82), Expect = 0.023 Identities = 15/17 (88%), Positives = 15/17 (88%) Frame = -3 Query: 228 AGFGRKGHAVGDIPGXR 178 AGFGR GHAVGDIPG R Sbjct: 103 AGFGRSGHAVGDIPGVR 119
>RS23_GILMI (Q9DFR4) 40S ribosomal protein S23| Length = 143 Score = 35.4 bits (80), Expect = 0.039 Identities = 15/17 (88%), Positives = 15/17 (88%) Frame = -3 Query: 228 AGFGRKGHAVGDIPGXR 178 AGFGRK HAVGDIPG R Sbjct: 103 AGFGRKXHAVGDIPGVR 119
>RS23_CAEEL (Q19877) 40S ribosomal protein S23| Length = 143 Score = 35.0 bits (79), Expect = 0.051 Identities = 14/17 (82%), Positives = 15/17 (88%) Frame = -3 Query: 228 AGFGRKGHAVGDIPGXR 178 +GFGR GHAVGDIPG R Sbjct: 103 SGFGRSGHAVGDIPGVR 119
>RS12_TETTH (P06147) 40S ribosomal protein S12| Length = 142 Score = 34.3 bits (77), Expect = 0.088 Identities = 14/17 (82%), Positives = 15/17 (88%) Frame = -3 Query: 228 AGFGRKGHAVGDIPGXR 178 AG GR+GHAVGDIPG R Sbjct: 104 AGLGRQGHAVGDIPGVR 120
>RS23_YEAST (P32827) 40S ribosomal protein S23 (S28) (YS14) (RP37)| Length = 145 Score = 32.3 bits (72), Expect = 0.33 Identities = 14/17 (82%), Positives = 14/17 (82%) Frame = -3 Query: 228 AGFGRKGHAVGDIPGXR 178 AGFGRKG A GDIPG R Sbjct: 105 AGFGRKGKAKGDIPGVR 121
>RS23_SACCA (Q6YIA2) 40S ribosomal protein S23| Length = 145 Score = 32.3 bits (72), Expect = 0.33 Identities = 14/17 (82%), Positives = 14/17 (82%) Frame = -3 Query: 228 AGFGRKGHAVGDIPGXR 178 AGFGRKG A GDIPG R Sbjct: 105 AGFGRKGKAKGDIPGVR 121
>RS23_SACBA (Q6YIA3) 40S ribosomal protein S23| Length = 145 Score = 32.3 bits (72), Expect = 0.33 Identities = 14/17 (82%), Positives = 14/17 (82%) Frame = -3 Query: 228 AGFGRKGHAVGDIPGXR 178 AGFGRKG A GDIPG R Sbjct: 105 AGFGRKGKAKGDIPGVR 121
>RS23_NEUCR (Q9HE74) 40S ribosomal protein S23| Length = 145 Score = 32.3 bits (72), Expect = 0.33 Identities = 14/17 (82%), Positives = 14/17 (82%) Frame = -3 Query: 228 AGFGRKGHAVGDIPGXR 178 AGFGRKG A GDIPG R Sbjct: 105 AGFGRKGKAKGDIPGVR 121
>RS23_CANGA (Q6FLA8) 40S ribosomal protein S23| Length = 145 Score = 32.3 bits (72), Expect = 0.33 Identities = 14/17 (82%), Positives = 14/17 (82%) Frame = -3 Query: 228 AGFGRKGHAVGDIPGXR 178 AGFGRKG A GDIPG R Sbjct: 105 AGFGRKGKAKGDIPGVR 121
>RS23_ASPFU (Q873W8) 40S ribosomal protein S23| Length = 145 Score = 32.3 bits (72), Expect = 0.33 Identities = 14/17 (82%), Positives = 14/17 (82%) Frame = -3 Query: 228 AGFGRKGHAVGDIPGXR 178 AGFGRKG A GDIPG R Sbjct: 105 AGFGRKGKAKGDIPGVR 121
>RS23_ENCCU (Q8SR65) 40S ribosomal protein S23| Length = 140 Score = 31.2 bits (69), Expect = 0.74 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = -3 Query: 225 GFGRKGHAVGDIPGXR 178 GFG+KG +VGDIPG R Sbjct: 101 GFGKKGRSVGDIPGIR 116
>RS23_SCHPO (P79057) 40S ribosomal protein S23| Length = 143 Score = 31.2 bits (69), Expect = 0.74 Identities = 13/17 (76%), Positives = 14/17 (82%) Frame = -3 Query: 228 AGFGRKGHAVGDIPGXR 178 +GFGRKG A GDIPG R Sbjct: 103 SGFGRKGKAKGDIPGVR 119 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,363,403 Number of Sequences: 219361 Number of extensions: 347412 Number of successful extensions: 477 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 470 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 477 length of database: 80,573,946 effective HSP length: 57 effective length of database: 68,070,369 effective search space used: 1633688856 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
