ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9i03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RLA3_MAIZE (O24413) 60S acidic ribosomal protein P3 (P1/P2-like)... 105 1e-22
2RLA3_ORYSA (P56724) 60S acidic ribosomal protein P3 (P1/P2-like) 95 1e-19
3YIBG_ECOLI (P32106) Hypothetical protein yibG precursor (ORF-A3) 30 6.1
4OR1D5_HUMAN (P58170) Olfactory receptor 1D5 (Olfactory receptor ... 29 8.0
5OR1D4_HUMAN (P47884) Olfactory receptor 1D4 (Olfactory receptor ... 29 8.0

>RLA3_MAIZE (O24413) 60S acidic ribosomal protein P3 (P1/P2-like) (P3A)|
          Length = 119

 Score =  105 bits (261), Expect = 1e-22
 Identities = 56/119 (47%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
 Frame = -3

Query: 552 GVFTFVCRDSGAEWSAKQHKGELEASAATPYDLQRQLVSAACAEDKSGGVQSSFTMVSPN 373
           GV+TFVCR++G EW+AKQH GE+EASAATPY+LQR+LV+AA A D   GVQSSF+MV+P+
Sbjct: 1   GVYTFVCRNNGGEWTAKQHSGEIEASAATPYELQRRLVAAASAADSRYGVQSSFSMVTPS 60

Query: 372 SAIFQV-VXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDDLGFSLFD 199
           SA+FQV V                                         +DD+GFSLFD
Sbjct: 61  SAVFQVIVGAVGGGAMMVSGGGGGGAAASGGAAAEAPKEEKKEEEKEESDDDMGFSLFD 119



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>RLA3_ORYSA (P56724) 60S acidic ribosomal protein P3 (P1/P2-like)|
          Length = 118

 Score = 95.1 bits (235), Expect = 1e-19
 Identities = 43/67 (64%), Positives = 55/67 (82%)
 Frame = -3

Query: 552 GVFTFVCRDSGAEWSAKQHKGELEASAATPYDLQRQLVSAACAEDKSGGVQSSFTMVSPN 373
           GVF+FVC+  G EW+AKQH+G+LEASA++ YDLQR +V  A + D SGGVQSSF++VSP 
Sbjct: 1   GVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRNVVQTALSADSSGGVQSSFSLVSPT 60

Query: 372 SAIFQVV 352
           SA+F VV
Sbjct: 61  SAVFVVV 67



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>YIBG_ECOLI (P32106) Hypothetical protein yibG precursor (ORF-A3)|
          Length = 153

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 15/54 (27%), Positives = 31/54 (57%)
 Frame = -3

Query: 546 FTFVCRDSGAEWSAKQHKGELEASAATPYDLQRQLVSAACAEDKSGGVQSSFTM 385
           F+F+C+  GA+   KQ++  + ++A T YDL  + +     + + G  ++SF +
Sbjct: 11  FSFICQLHGADVKIKQNESMMGSTAMT-YDLSEEKLMKLKYKSQHGDSEASFRL 63



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>OR1D5_HUMAN (P58170) Olfactory receptor 1D5 (Olfactory receptor 17-31)|
           (OR17-31)
          Length = 312

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 97  VTFCSCEDLVMLFCSFDILLWL 32
           VTFC   ++  LFC   ILLWL
Sbjct: 166 VTFCGPREIHYLFCDMYILLWL 187



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>OR1D4_HUMAN (P47884) Olfactory receptor 1D4 (Olfactory receptor 17-30)|
           (OR17-30)
          Length = 311

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 97  VTFCSCEDLVMLFCSFDILLWL 32
           VTFC   ++  LFC   ILLWL
Sbjct: 166 VTFCGPREIHYLFCDMYILLWL 187


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,935,629
Number of Sequences: 219361
Number of extensions: 645592
Number of successful extensions: 1636
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1634
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4643056080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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