ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9i01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP) 37 0.044
2MTA_CYPS1 (Q92044) Metallothionein A (MT A) 32 1.4
3MAFB_HUMAN (Q9Y5Q3) Transcription factor MafB (V-maf musculoapon... 32 1.4
4Y1092_METJA (Q58492) Putative nickel/cobalt efflux system MJ1092 32 1.4
5SYA_XYLFT (Q87F43) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-... 32 2.4
6SYA_XYLFA (Q9PH22) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-... 32 2.4
7HMX_STRPU (Q26656) Homeobox protein Hmx (SpHmx) (H6-like) (Fragm... 31 4.1
8EGGS_SCHMA (P08016) Putative eggshell protein (Fragment) 30 5.4
9NR4A3_MOUSE (Q9QZB6) Orphan nuclear receptor NR4A3 (Orphan nucle... 30 5.4
10STAM2_HUMAN (O75886) Signal transducing adapter molecule 2 (STAM-2) 30 7.1
11MT_PLEAT (Q6XUW5) Metallothionein (MT) 30 9.2
12WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC... 30 9.2
13PCSK9_HUMAN (Q8NBP7) Proprotein convertase subtilisin/kexin type... 30 9.2
14APBB2_HUMAN (Q92870) Amyloid beta A4 precursor protein-binding f... 30 9.2
15TIMP2_RABIT (Q9TRZ7) Metalloproteinase inhibitor 2 (TIMP-2) (Tis... 30 9.2

>SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP)|
          Length = 381

 Score = 37.4 bits (85), Expect = 0.044
 Identities = 22/70 (31%), Positives = 32/70 (45%)
 Frame = +3

Query: 150 RELHLPSIYIPLKNPQVSYARVHGENAGHHHGDGTHMSEPQQGTAPSQLGPCHSVPPSET 329
           + + L ++   ++ P   Y   H  N GH H   + +SE QQ  AP+   P H  PP   
Sbjct: 187 KRVSLATVDKTVETPSPHYHHEHHHNHGHQHLGSSELSENQQPGAPN--APTHPAPPG-- 242

Query: 330 *SG*HHKMRG 359
               HHK +G
Sbjct: 243 -LHHHHKHKG 251



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>MTA_CYPS1 (Q92044) Metallothionein A (MT A)|
          Length = 60

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = -3

Query: 541 PCS*SSNGEDGSRWSCTCTSIITLCNYSSSVSCCWQLILDDVSCNHCTS 395
           PC  S  G+     SCTCT+    C   S  SCC         C+ C S
Sbjct: 3   PCECSKTGKCNCGTSCTCTNCSCKCCKKSCCSCC------PSGCSKCAS 45



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>MAFB_HUMAN (Q9Y5Q3) Transcription factor MafB (V-maf musculoaponeurotic|
           fibrosarcoma oncogene homolog B)
          Length = 323

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +3

Query: 180 PLKNPQVSYARVHG-ENAGHHHGDGTHMSEPQQGTAPSQLGPCHSVPPSET*SG*HHKMR 356
           P+  P  S+    G  +  HHH    H + P  G A  +LGP H+ P        HH   
Sbjct: 116 PVPQPLQSFDSFRGAHHHHHHHHPHPHHAYPGAGVAHDELGP-HAHPHHH-----HHHQA 169

Query: 357 GPPGTSS 377
            PP +S+
Sbjct: 170 SPPPSSA 176



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>Y1092_METJA (Q58492) Putative nickel/cobalt efflux system MJ1092|
          Length = 214

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
 Frame = -1

Query: 696 HVVSTALLGITAGTMANTIAGEETVHKLASLL--LIFLGAGYILLFVLGKGGHSHAHNHP 523
           H     LLGI +  +  ++   + VH + S++  LI +  G  ++       + H H H 
Sbjct: 56  HTAVIFLLGILSIYLLESL-NVDVVHDMMSVVGGLILIAVGIWII-----RSYLHPHEHK 109

Query: 522 ME-KMAVAGLVLVPALSPCATTLPVFLAVGNSSSMMFLAIIVLLFSTITVMTSLVALS 352
           ++ K  V  L L   L PC   L V L   +S +++   I V +FS I +  SL  L+
Sbjct: 110 VDTKKGVITLGLSAGLVPCPAALAVLLLSISSGNLIDGLIYVAIFS-IGLAISLTGLA 166



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>SYA_XYLFT (Q87F43) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 884

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 439 WQLILDDVSCNHCTSLQYHHSDDVPGGP 356
           WQ+  D   C  CT + Y H + +PGGP
Sbjct: 173 WQMA-DTGPCGPCTEIFYDHGEHIPGGP 199



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>SYA_XYLFA (Q9PH22) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 884

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 439 WQLILDDVSCNHCTSLQYHHSDDVPGGP 356
           WQ+  D   C  CT + Y H + +PGGP
Sbjct: 173 WQMA-DTGPCGPCTEIFYDHGEHIPGGP 199



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>HMX_STRPU (Q26656) Homeobox protein Hmx (SpHmx) (H6-like) (Fragment)|
          Length = 405

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
 Frame = +3

Query: 126 DNLFHSELRELHLPSIYIP---LKNPQVSYARVHGENAGHHHGDGTHMSEP---QQGTAP 287
           D L       LH+PS  +P   L +    YA +HG +  H+HG     S P   Q  T  
Sbjct: 133 DELAAHRAAALHIPSAALPFSHLAHNPAFYAWMHGASFLHYHGMPAFNSHPPIAQPLTNS 192

Query: 288 SQLGPCHSVPPSET 329
           S+L     + P  T
Sbjct: 193 SRLAMAKDISPRPT 206



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>EGGS_SCHMA (P08016) Putative eggshell protein (Fragment)|
          Length = 149

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -1

Query: 348 YGASQIKFHWVERYDKXXXXXXXXXXXXLTYVFHHHDGDQHSLHAHVHR 202
           YG+   K+ + + +DK              +  HHH+ D H  H H H+
Sbjct: 96  YGSRYEKYSYRKDHDKHDHDEHDHHDDHHDHRHHHHEHDHHHHHEHDHK 144



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>NR4A3_MOUSE (Q9QZB6) Orphan nuclear receptor NR4A3 (Orphan nuclear receptor|
           TEC) (Translocated in extraskeletal chondrosarcoma)
          Length = 627

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +3

Query: 210 RVHGENAGHHHGDGTHMSEPQQGTAPSQLGPCHSVPPSET*SG*HHKMRGPPGT 371
           R HG +  HHH    H  + QQ + P   GP   V PS +     +  + PP T
Sbjct: 94  REHGYHHHHHHHHHHHHHQQQQPSIPPPSGPEDEVLPSTS----MYFKQSPPST 143



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>STAM2_HUMAN (O75886) Signal transducing adapter molecule 2 (STAM-2)|
          Length = 525

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
 Frame = +3

Query: 138 HSELRELHLPSIYIPLKN--PQVSY-ARVHGENAGHHHGDGTHMSEPQQGTA--PSQLGP 302
           +S   +LH P+ Y P  +  P  +Y  + HG   G++ G   H     Q  +  P Q+GP
Sbjct: 371 YSVYSKLHPPAHYPPASSGVPMQTYPVQSHG---GNYMGQSIHQVTVAQSYSLGPDQIGP 427

Query: 303 CHSVPPS 323
             S+PP+
Sbjct: 428 LRSLPPN 434



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>MT_PLEAT (Q6XUW5) Metallothionein (MT)|
          Length = 61

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = -3

Query: 541 PCS*SSNGEDGSRWSCTCTS-IITLCNYSSSVSCCWQLILDDVSCNHCTS 395
           PC  S  G      +C+CT+   T C  +S  SCC         C+ C S
Sbjct: 3   PCECSKTGSCNCGGNCSCTNCACTSCKKTSCCSCC------PAGCSKCAS 46



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>WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC146)|
          Length = 1336

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +3

Query: 222 ENAGHHHGDGTHMSEPQQGTAPSQLGPCHSVPPSET*SG*HHKMRGPPGTSS 377
           E  G H   G     PQ+   P ++      PP  +  G   ++RGPPG+ S
Sbjct: 809 EMRGPHPPGGLLGHGPQEMRGPQEIRGMQGPPPQGSMLGPPQELRGPPGSQS 860



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>PCSK9_HUMAN (Q8NBP7) Proprotein convertase subtilisin/kexin type 9 precursor|
           (EC 3.4.21.-) (Proprotein convertase PC9)
           (Subtilisin/kexin-like protease PC9) (Neural
           apoptosis-regulated convertase 1) (NARC-1)
          Length = 692

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 22/60 (36%), Positives = 35/60 (58%)
 Frame = -1

Query: 660 GTMANTIAGEETVHKLASLLLIFLGAGYILLFVLGKGGHSHAHNHPMEKMAVAGLVLVPA 481
           GT++ T+ G E + K  S L+  +G   +LL + G  G+S   N   +++A AG+VLV A
Sbjct: 259 GTVSGTLIGLEFIRK--SQLVQPVGPLVVLLPLAG--GYSRVLNAACQRLARAGVVLVTA 314



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>APBB2_HUMAN (Q92870) Amyloid beta A4 precursor protein-binding family B member|
           2 (Fe65-like protein)
          Length = 758

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 207 ARVHGENAGHHHGDGTHMSEPQQGTAPSQLG 299
           AR   +N G+HHG     S+P QG A + +G
Sbjct: 172 ARELEQNQGNHHGTAEEKSQPVQGQASTIIG 202



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>TIMP2_RABIT (Q9TRZ7) Metalloproteinase inhibitor 2 (TIMP-2) (Tissue inhibitor|
           of metalloproteinases-2)
          Length = 194

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -2

Query: 254 CSIT---MMVTSILSMHTCIGNLWVLERNINRWQMKF 153
           C IT   M+   I S   C+   WV E+NINR Q KF
Sbjct: 128 CKITRCPMIPCYISSPDECLWMDWVTEKNINRHQAKF 164


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,287,925
Number of Sequences: 219361
Number of extensions: 2299295
Number of successful extensions: 6595
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6559
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6969622431
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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