Clone Name | rbags9i01 |
---|---|
Clone Library Name | barley_pub |
>SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP)| Length = 381 Score = 37.4 bits (85), Expect = 0.044 Identities = 22/70 (31%), Positives = 32/70 (45%) Frame = +3 Query: 150 RELHLPSIYIPLKNPQVSYARVHGENAGHHHGDGTHMSEPQQGTAPSQLGPCHSVPPSET 329 + + L ++ ++ P Y H N GH H + +SE QQ AP+ P H PP Sbjct: 187 KRVSLATVDKTVETPSPHYHHEHHHNHGHQHLGSSELSENQQPGAPN--APTHPAPPG-- 242 Query: 330 *SG*HHKMRG 359 HHK +G Sbjct: 243 -LHHHHKHKG 251
>MTA_CYPS1 (Q92044) Metallothionein A (MT A)| Length = 60 Score = 32.3 bits (72), Expect = 1.4 Identities = 17/49 (34%), Positives = 20/49 (40%) Frame = -3 Query: 541 PCS*SSNGEDGSRWSCTCTSIITLCNYSSSVSCCWQLILDDVSCNHCTS 395 PC S G+ SCTCT+ C S SCC C+ C S Sbjct: 3 PCECSKTGKCNCGTSCTCTNCSCKCCKKSCCSCC------PSGCSKCAS 45
>MAFB_HUMAN (Q9Y5Q3) Transcription factor MafB (V-maf musculoaponeurotic| fibrosarcoma oncogene homolog B) Length = 323 Score = 32.3 bits (72), Expect = 1.4 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Frame = +3 Query: 180 PLKNPQVSYARVHG-ENAGHHHGDGTHMSEPQQGTAPSQLGPCHSVPPSET*SG*HHKMR 356 P+ P S+ G + HHH H + P G A +LGP H+ P HH Sbjct: 116 PVPQPLQSFDSFRGAHHHHHHHHPHPHHAYPGAGVAHDELGP-HAHPHHH-----HHHQA 169 Query: 357 GPPGTSS 377 PP +S+ Sbjct: 170 SPPPSSA 176
>Y1092_METJA (Q58492) Putative nickel/cobalt efflux system MJ1092| Length = 214 Score = 32.3 bits (72), Expect = 1.4 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%) Frame = -1 Query: 696 HVVSTALLGITAGTMANTIAGEETVHKLASLL--LIFLGAGYILLFVLGKGGHSHAHNHP 523 H LLGI + + ++ + VH + S++ LI + G ++ + H H H Sbjct: 56 HTAVIFLLGILSIYLLESL-NVDVVHDMMSVVGGLILIAVGIWII-----RSYLHPHEHK 109 Query: 522 ME-KMAVAGLVLVPALSPCATTLPVFLAVGNSSSMMFLAIIVLLFSTITVMTSLVALS 352 ++ K V L L L PC L V L +S +++ I V +FS I + SL L+ Sbjct: 110 VDTKKGVITLGLSAGLVPCPAALAVLLLSISSGNLIDGLIYVAIFS-IGLAISLTGLA 166
>SYA_XYLFT (Q87F43) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 884 Score = 31.6 bits (70), Expect = 2.4 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -3 Query: 439 WQLILDDVSCNHCTSLQYHHSDDVPGGP 356 WQ+ D C CT + Y H + +PGGP Sbjct: 173 WQMA-DTGPCGPCTEIFYDHGEHIPGGP 199
>SYA_XYLFA (Q9PH22) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 884 Score = 31.6 bits (70), Expect = 2.4 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -3 Query: 439 WQLILDDVSCNHCTSLQYHHSDDVPGGP 356 WQ+ D C CT + Y H + +PGGP Sbjct: 173 WQMA-DTGPCGPCTEIFYDHGEHIPGGP 199
>HMX_STRPU (Q26656) Homeobox protein Hmx (SpHmx) (H6-like) (Fragment)| Length = 405 Score = 30.8 bits (68), Expect = 4.1 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%) Frame = +3 Query: 126 DNLFHSELRELHLPSIYIP---LKNPQVSYARVHGENAGHHHGDGTHMSEP---QQGTAP 287 D L LH+PS +P L + YA +HG + H+HG S P Q T Sbjct: 133 DELAAHRAAALHIPSAALPFSHLAHNPAFYAWMHGASFLHYHGMPAFNSHPPIAQPLTNS 192 Query: 288 SQLGPCHSVPPSET 329 S+L + P T Sbjct: 193 SRLAMAKDISPRPT 206
>EGGS_SCHMA (P08016) Putative eggshell protein (Fragment)| Length = 149 Score = 30.4 bits (67), Expect = 5.4 Identities = 13/49 (26%), Positives = 21/49 (42%) Frame = -1 Query: 348 YGASQIKFHWVERYDKXXXXXXXXXXXXLTYVFHHHDGDQHSLHAHVHR 202 YG+ K+ + + +DK + HHH+ D H H H H+ Sbjct: 96 YGSRYEKYSYRKDHDKHDHDEHDHHDDHHDHRHHHHEHDHHHHHEHDHK 144
>NR4A3_MOUSE (Q9QZB6) Orphan nuclear receptor NR4A3 (Orphan nuclear receptor| TEC) (Translocated in extraskeletal chondrosarcoma) Length = 627 Score = 30.4 bits (67), Expect = 5.4 Identities = 18/54 (33%), Positives = 24/54 (44%) Frame = +3 Query: 210 RVHGENAGHHHGDGTHMSEPQQGTAPSQLGPCHSVPPSET*SG*HHKMRGPPGT 371 R HG + HHH H + QQ + P GP V PS + + + PP T Sbjct: 94 REHGYHHHHHHHHHHHHHQQQQPSIPPPSGPEDEVLPSTS----MYFKQSPPST 143
>STAM2_HUMAN (O75886) Signal transducing adapter molecule 2 (STAM-2)| Length = 525 Score = 30.0 bits (66), Expect = 7.1 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 5/67 (7%) Frame = +3 Query: 138 HSELRELHLPSIYIPLKN--PQVSY-ARVHGENAGHHHGDGTHMSEPQQGTA--PSQLGP 302 +S +LH P+ Y P + P +Y + HG G++ G H Q + P Q+GP Sbjct: 371 YSVYSKLHPPAHYPPASSGVPMQTYPVQSHG---GNYMGQSIHQVTVAQSYSLGPDQIGP 427 Query: 303 CHSVPPS 323 S+PP+ Sbjct: 428 LRSLPPN 434
>MT_PLEAT (Q6XUW5) Metallothionein (MT)| Length = 61 Score = 29.6 bits (65), Expect = 9.2 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%) Frame = -3 Query: 541 PCS*SSNGEDGSRWSCTCTS-IITLCNYSSSVSCCWQLILDDVSCNHCTS 395 PC S G +C+CT+ T C +S SCC C+ C S Sbjct: 3 PCECSKTGSCNCGGNCSCTNCACTSCKKTSCCSCC------PAGCSKCAS 46
>WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC146)| Length = 1336 Score = 29.6 bits (65), Expect = 9.2 Identities = 16/52 (30%), Positives = 23/52 (44%) Frame = +3 Query: 222 ENAGHHHGDGTHMSEPQQGTAPSQLGPCHSVPPSET*SG*HHKMRGPPGTSS 377 E G H G PQ+ P ++ PP + G ++RGPPG+ S Sbjct: 809 EMRGPHPPGGLLGHGPQEMRGPQEIRGMQGPPPQGSMLGPPQELRGPPGSQS 860
>PCSK9_HUMAN (Q8NBP7) Proprotein convertase subtilisin/kexin type 9 precursor| (EC 3.4.21.-) (Proprotein convertase PC9) (Subtilisin/kexin-like protease PC9) (Neural apoptosis-regulated convertase 1) (NARC-1) Length = 692 Score = 29.6 bits (65), Expect = 9.2 Identities = 22/60 (36%), Positives = 35/60 (58%) Frame = -1 Query: 660 GTMANTIAGEETVHKLASLLLIFLGAGYILLFVLGKGGHSHAHNHPMEKMAVAGLVLVPA 481 GT++ T+ G E + K S L+ +G +LL + G G+S N +++A AG+VLV A Sbjct: 259 GTVSGTLIGLEFIRK--SQLVQPVGPLVVLLPLAG--GYSRVLNAACQRLARAGVVLVTA 314
>APBB2_HUMAN (Q92870) Amyloid beta A4 precursor protein-binding family B member| 2 (Fe65-like protein) Length = 758 Score = 29.6 bits (65), Expect = 9.2 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +3 Query: 207 ARVHGENAGHHHGDGTHMSEPQQGTAPSQLG 299 AR +N G+HHG S+P QG A + +G Sbjct: 172 ARELEQNQGNHHGTAEEKSQPVQGQASTIIG 202
>TIMP2_RABIT (Q9TRZ7) Metalloproteinase inhibitor 2 (TIMP-2) (Tissue inhibitor| of metalloproteinases-2) Length = 194 Score = 29.6 bits (65), Expect = 9.2 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%) Frame = -2 Query: 254 CSIT---MMVTSILSMHTCIGNLWVLERNINRWQMKF 153 C IT M+ I S C+ WV E+NINR Q KF Sbjct: 128 CKITRCPMIPCYISSPDECLWMDWVTEKNINRHQAKF 164 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 104,287,925 Number of Sequences: 219361 Number of extensions: 2299295 Number of successful extensions: 6595 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 5935 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6559 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6969622431 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)