ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9h22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK069213.1| Oryza sativa (japonica cultivar-group) cDNA clon... 210 4e-51
2dbj|AK061110.1| Oryza sativa (japonica cultivar-group) cDNA clon... 210 4e-51
3gb|AC027133.3| Oryza sativa (japonica cultivar-group) chromosome... 115 2e-22
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 115 2e-22
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 115 2e-22
6gb|BT018076.1| Zea mays clone EL01N0551G08.c mRNA sequence 68 4e-08
7gb|AY106784.1| Zea mays PCO100577 mRNA sequence 68 4e-08
8ref|NM_118205.1| Arabidopsis thaliana catalytic AT4G20870 mRNA, ... 58 4e-05
9gb|DQ226621.1| Boechera divaricarpa isolate SLW-4-B09 mRNA sequence 58 4e-05
10emb|AL161553.2|ATCHRIV53 Arabidopsis thaliana DNA chromosome 4, ... 58 4e-05
11emb|AL080282.1|ATT13K14 Arabidopsis thaliana DNA chromosome 4, B... 58 4e-05
12gb|AY101538.1| Arabidopsis thaliana AT4g20870/T13K14_30 mRNA, co... 58 4e-05
13gb|AY058151.1| Arabidopsis thaliana AT4g20870/T13K14_30 mRNA, co... 58 4e-05
14gb|AY044315.1| Arabidopsis thaliana fatty acid hydroxylase-like ... 58 4e-05
15emb|BX827033.1|CNS0A42J Arabidopsis thaliana Full-length cDNA Co... 58 4e-05
16emb|BX828691.1|CNS0A3KV Arabidopsis thaliana Full-length cDNA Co... 58 4e-05
17emb|BX829252.1|CNS0A3KD Arabidopsis thaliana Full-length cDNA Co... 58 4e-05
18ref|NM_184996.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.035
19gb|AC149429.1| Populus trichocarpa clone Pop1-109D09, complete s... 48 0.035
20gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 48 0.035
21gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 geno... 48 0.035
22dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.035
23dbj|AK103085.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.035
24dbj|AK059874.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.035
25gb|AC147501.9| Medicago truncatula clone mth2-12n2, complete seq... 46 0.14
26emb|AL049646.19|HSDJ568F9 Human DNA sequence from clone RP4-568F... 46 0.14
27gb|AC008601.7| Homo sapiens chromosome 5 clone CTB-105L4, comple... 46 0.14
28ref|XM_419627.1| PREDICTED: Gallus gallus similar to hypothetica... 44 0.55
29gb|CP000302.1| Shewanella denitrificans OS217, complete genome 44 0.55
30gb|AC171141.2| Helobdella robusta clone CH306-1B3, complete sequ... 44 0.55
31ref|NM_129030.2| Arabidopsis thaliana FAH1 (FATTY ACID HYDROXYLA... 42 2.2
32ref|XM_363498.1| Magnaporthe grisea 70-15 hypothetical protein (... 42 2.2
33gb|AY341245.1| Homo sapiens chromosome condensation 1-like (CHC1... 42 2.2
34emb|AL157813.11| Human DNA sequence from clone RP11-165D7 on chr... 42 2.2
35gb|BT000482.1| Arabidopsis thaliana fatty acid hydroxylase (FAH1... 42 2.2
36gb|AC021010.8| Homo sapiens, clone RP11-69D2, complete sequence 42 2.2
37gb|AC099059.2| Homo sapiens chromosome 3 clone RP11-756A10, comp... 42 2.2
38gb|AY050326.1| Arabidopsis thaliana At2g34770/T29F13.2 mRNA, com... 42 2.2
39emb|AJ877899.1| Human immunodeficiency virus type 1 subtype A pr... 42 2.2
40gb|AF021804.1|AF021804 Arabidopsis thaliana fatty acid hydroxyla... 42 2.2
41ref|NM_115054.2| Arabidopsis thaliana RNA binding / nucleic acid... 40 8.6
42ref|NM_001035763.1| Arabidopsis thaliana RNA binding / nucleic a... 40 8.6
43gb|AC124749.5| Mus musculus BAC clone RP23-262G23 from chromosom... 40 8.6
44gb|AC126046.3| Mus musculus BAC clone RP23-176P24 from chromosom... 40 8.6
45gb|AC126439.3| Mus musculus BAC clone RP24-290I17 from chromosom... 40 8.6
46gb|AC125464.4| Mus musculus BAC clone RP23-113C9 from 14, comple... 40 8.6
47emb|AL122014.27|HSDJ874H1 Human DNA sequence from clone RP5-874H... 40 8.6
48gb|AC068295.15| Homo sapiens 3 BAC RP11-44H4 (Roswell Park Cance... 40 8.6
49gb|AY080846.1| Arabidopsis thaliana unknown protein (At3g51950) ... 40 8.6
50emb|AL672141.12| Mouse DNA sequence from clone RP23-219C18 on ch... 40 8.6
51emb|AL049711.3|ATF4F15 Arabidopsis thaliana DNA chromosome 3, BA... 40 8.6
52ref|NM_001027786.1| Caenorhabditis elegans Y82E9BL.18 (Y82E9BL.1... 40 8.6
53emb|BX825099.1|CNS0A4VD Arabidopsis thaliana Full-length cDNA Co... 40 8.6
54emb|BX842676.2| Mouse DNA sequence from clone RP24-207B15 on chr... 40 8.6
55dbj|BS000088.1| Pan troglodytes chromosome 22 clone:RP43-078B15,... 40 8.6
56gb|AC131727.4| Mus musculus BAC clone RP23-120E19 from 14, compl... 40 8.6
57dbj|AP001688.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 8.6
58dbj|AP002793.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 8.6
59gb|AC087081.2| Caenorhabditis elegans cosmid Y82E9BL, complete s... 40 8.6
60dbj|AP000965.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 8.6 
>dbj|AK069213.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010G06, full
           insert sequence
          Length = 1392

 Score =  210 bits (106), Expect = 4e-51
 Identities = 294/354 (83%), Gaps = 2/354 (0%)
 Strand = Plus / Minus

                                                                       
Query: 260 tcttgtcgacggttttcgttgaaggcagcgttccaaatacgtggtcccacagggtcgatg 319
           ||||||||| ||||||||| || ||||  || ||||| || || |||||||| |||||||
Sbjct: 871 tcttgtcgatggttttcgtcgagggcaatgtaccaaacacatgatcccacagcgtcgatg 812

                                                                       
Query: 320 ttattccaaagcccttgttttgaattctgaagtgatggttaagatggtatttcttgagat 379
           ||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 811 ttattccgaaccccttgttttggattctgaagtgatggttcagatggtatttcttgaggt 752

                                                                       
Query: 380 attttgctggatcgaacgaggggtgggcgtgatgcaggtagtagtgtgtgcaatcataga 439
            |||| |||||||  | || || ||  | |||||||| |||||||||||||| ||||| |
Sbjct: 751 gttttcctggatcagatgacggctgcccatgatgcagatagtagtgtgtgcagtcataca 692

                                                                       
Query: 440 tcacgtagcccaacaggccacctccaaacacgccaggagtggtagttgtagtagtgaaga 499
           |||| || ||||||||||| ||||||||||||||  |||| ||||| | |||||| |  |
Sbjct: 691 tcacataacccaacaggccgcctccaaacacgccgtgagttgtagtcggagtagtaatta 632

                                                                       
Query: 500 gcttgacaaaattccagaacggatagcacaagatggctgcggcaggttggtggaaataca 559
           || |||  | ||||||||||||| |||||||||| ||||| ||  | ||||||||| |||
Sbjct: 631 gcctgattagattccagaacggaaagcacaagatagctgcagc-tgctggtggaaagaca 573

                                                                 
Query: 560 agtcgaagcccatccatttgggtgcttgtgatggcatccatgcagaagataatg 613
           |||||||| || | || | ||||||||||||||   |||||| ||||| |||||
Sbjct: 572 agtcgaaggccgt-cagtcgggtgcttgtgatgaattccatgaagaaggtaatg 520
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>dbj|AK061110.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-D02, full
           insert sequence
          Length = 1438

 Score =  210 bits (106), Expect = 4e-51
 Identities = 294/354 (83%), Gaps = 2/354 (0%)
 Strand = Plus / Minus

                                                                       
Query: 260 tcttgtcgacggttttcgttgaaggcagcgttccaaatacgtggtcccacagggtcgatg 319
           ||||||||| ||||||||| || ||||  || ||||| || || |||||||| |||||||
Sbjct: 893 tcttgtcgatggttttcgtcgagggcaatgtaccaaacacatgatcccacagcgtcgatg 834

                                                                       
Query: 320 ttattccaaagcccttgttttgaattctgaagtgatggttaagatggtatttcttgagat 379
           ||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 833 ttattccgaaccccttgttttggattctgaagtgatggttcagatggtatttcttgaggt 774

                                                                       
Query: 380 attttgctggatcgaacgaggggtgggcgtgatgcaggtagtagtgtgtgcaatcataga 439
            |||| |||||||  | || || ||  | |||||||| |||||||||||||| ||||| |
Sbjct: 773 gttttcctggatcagatgacggctgcccatgatgcagatagtagtgtgtgcagtcataca 714

                                                                       
Query: 440 tcacgtagcccaacaggccacctccaaacacgccaggagtggtagttgtagtagtgaaga 499
           |||| || ||||||||||| ||||||||||||||  |||| ||||| | |||||| |  |
Sbjct: 713 tcacataacccaacaggccgcctccaaacacgccgtgagttgtagtcggagtagtaatta 654

                                                                       
Query: 500 gcttgacaaaattccagaacggatagcacaagatggctgcggcaggttggtggaaataca 559
           || |||  | ||||||||||||| |||||||||| ||||| ||  | ||||||||| |||
Sbjct: 653 gcctgattagattccagaacggaaagcacaagatagctgcagc-tgctggtggaaagaca 595

                                                                 
Query: 560 agtcgaagcccatccatttgggtgcttgtgatggcatccatgcagaagataatg 613
           |||||||| || | || | ||||||||||||||   |||||| ||||| |||||
Sbjct: 594 agtcgaaggccgt-cagtcgggtgcttgtgatgaattccatgaagaaggtaatg 542
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>gb|AC027133.3| Oryza sativa (japonica cultivar-group) chromosome 12 clone
             OSJNBb0003F09, complete sequence
          Length = 159600

 Score =  115 bits (58), Expect = 2e-22
 Identities = 100/114 (87%)
 Strand = Plus / Minus

                                                                         
Query: 260   tcttgtcgacggttttcgttgaaggcagcgttccaaatacgtggtcccacagggtcgatg 319
             ||||||||| ||||||||| || ||||  || ||||| || || |||||||| |||||||
Sbjct: 63900 tcttgtcgatggttttcgtcgagggcaatgtaccaaacacatgatcccacagcgtcgatg 63841

                                                                   
Query: 320   ttattccaaagcccttgttttgaattctgaagtgatggttaagatggtatttct 373
             ||||||| || ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 63840 ttattccgaaccccttgttttggattctgaagtgatggttcagatggtatttct 63787



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 75/86 (87%)
 Strand = Plus / Minus

                                                                         
Query: 409   tgatgcaggtagtagtgtgtgcaatcatagatcacgtagcccaacaggccacctccaaac 468
             |||||||| |||||||||||||| ||||| ||||| || ||||||||||| |||||||||
Sbjct: 63658 tgatgcagatagtagtgtgtgcagtcatacatcacataacccaacaggccgcctccaaac 63599

                                       
Query: 469   acgccaggagtggtagttgtagtagt 494
             |||||  |||| ||||| | ||||||
Sbjct: 63598 acgccgtgagttgtagtcggagtagt 63573
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  115 bits (58), Expect = 2e-22
 Identities = 100/114 (87%)
 Strand = Plus / Minus

                                                                            
Query: 260      tcttgtcgacggttttcgttgaaggcagcgttccaaatacgtggtcccacagggtcgatg 319
                ||||||||| ||||||||| || ||||  || ||||| || || |||||||| |||||||
Sbjct: 26938933 tcttgtcgatggttttcgtcgagggcaatgtaccaaacacatgatcccacagcgtcgatg 26938874

                                                                      
Query: 320      ttattccaaagcccttgttttgaattctgaagtgatggttaagatggtatttct 373
                ||||||| || ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 26938873 ttattccgaaccccttgttttggattctgaagtgatggttcagatggtatttct 26938820



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 75/86 (87%)
 Strand = Plus / Minus

                                                                            
Query: 409      tgatgcaggtagtagtgtgtgcaatcatagatcacgtagcccaacaggccacctccaaac 468
                |||||||| |||||||||||||| ||||| ||||| || ||||||||||| |||||||||
Sbjct: 26938691 tgatgcagatagtagtgtgtgcagtcatacatcacataacccaacaggccgcctccaaac 26938632

                                          
Query: 469      acgccaggagtggtagttgtagtagt 494
                |||||  |||| ||||| | ||||||
Sbjct: 26938631 acgccgtgagttgtagtcggagtagt 26938606
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  115 bits (58), Expect = 2e-22
 Identities = 100/114 (87%)
 Strand = Plus / Minus

                                                                            
Query: 260      tcttgtcgacggttttcgttgaaggcagcgttccaaatacgtggtcccacagggtcgatg 319
                ||||||||| ||||||||| || ||||  || ||||| || || |||||||| |||||||
Sbjct: 26867103 tcttgtcgatggttttcgtcgagggcaatgtaccaaacacatgatcccacagcgtcgatg 26867044

                                                                      
Query: 320      ttattccaaagcccttgttttgaattctgaagtgatggttaagatggtatttct 373
                ||||||| || ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 26867043 ttattccgaaccccttgttttggattctgaagtgatggttcagatggtatttct 26866990



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 75/86 (87%)
 Strand = Plus / Minus

                                                                            
Query: 409      tgatgcaggtagtagtgtgtgcaatcatagatcacgtagcccaacaggccacctccaaac 468
                |||||||| |||||||||||||| ||||| ||||| || ||||||||||| |||||||||
Sbjct: 26866861 tgatgcagatagtagtgtgtgcagtcatacatcacataacccaacaggccgcctccaaac 26866802

                                          
Query: 469      acgccaggagtggtagttgtagtagt 494
                |||||  |||| ||||| | ||||||
Sbjct: 26866801 acgccgtgagttgtagtcggagtagt 26866776
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>gb|BT018076.1| Zea mays clone EL01N0551G08.c mRNA sequence
          Length = 1084

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 115/142 (80%)
 Strand = Plus / Minus

                                                                       
Query: 328 aagcccttgttttgaattctgaagtgatggttaagatggtatttcttgagatattttgct 387
           ||||||||||  || ||||||||||||||||| || || ||  ||||||||| |||||||
Sbjct: 740 aagcccttgtcctggattctgaagtgatggttgaggtgatacctcttgagatgttttgct 681

                                                                       
Query: 388 ggatcgaacgaggggtgggcgtgatgcaggtagtagtgtgtgcaatcatagatcacgtag 447
           || ||    || || ||  | || |||||||||||||| ||||||||||| ||||| || 
Sbjct: 680 gggtctttggatggttgcccatggtgcaggtagtagtgagtgcaatcatacatcacatat 621

                                 
Query: 448 cccaacaggccacctccaaaca 469
           |||||||| || ||||| ||||
Sbjct: 620 cccaacagaccgcctccgaaca 599
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>gb|AY106784.1| Zea mays PCO100577 mRNA sequence
          Length = 1072

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 115/142 (80%)
 Strand = Plus / Minus

                                                                       
Query: 328 aagcccttgttttgaattctgaagtgatggttaagatggtatttcttgagatattttgct 387
           ||||||||||  || ||||||||||||||||| || || ||  ||||||||| |||||||
Sbjct: 797 aagcccttgtcctggattctgaagtgatggttgaggtgatacctcttgagatgttttgct 738

                                                                       
Query: 388 ggatcgaacgaggggtgggcgtgatgcaggtagtagtgtgtgcaatcatagatcacgtag 447
           || ||    || || ||  | || |||||||||||||| ||||||||||| ||||| || 
Sbjct: 737 gggtctttggatggttgcccatggtgcaggtagtagtgagtgcaatcatacatcacatat 678

                                 
Query: 448 cccaacaggccacctccaaaca 469
           |||||||| || ||||| ||||
Sbjct: 677 cccaacagaccgcctccgaaca 656
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>ref|NM_118205.1| Arabidopsis thaliana catalytic AT4G20870 mRNA, complete cds
          Length = 748

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 578 tgggtgcttgtgatggcatccatgcagaagata 610
           |||||||||||||||||||||||| ||||||||
Sbjct: 390 tgggtgcttgtgatggcatccatgaagaagata 358
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>gb|DQ226621.1| Boechera divaricarpa isolate SLW-4-B09 mRNA sequence
          Length = 385

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 578 tgggtgcttgtgatggcatccatgcagaagata 610
           |||||||||||||||||||||||| ||||||||
Sbjct: 298 tgggtgcttgtgatggcatccatgaagaagata 330
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>emb|AL161553.2|ATCHRIV53 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 53
          Length = 197568

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                               
Query: 578    tgggtgcttgtgatggcatccatgcagaagata 610
              |||||||||||||||||||||||| ||||||||
Sbjct: 179280 tgggtgcttgtgatggcatccatgaagaagata 179312
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>emb|AL080282.1|ATT13K14 Arabidopsis thaliana DNA chromosome 4, BAC clone T13K14 (ESSA project)
          Length = 91570

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                              
Query: 578   tgggtgcttgtgatggcatccatgcagaagata 610
             |||||||||||||||||||||||| ||||||||
Sbjct: 14234 tgggtgcttgtgatggcatccatgaagaagata 14266
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>gb|AY101538.1| Arabidopsis thaliana AT4g20870/T13K14_30 mRNA, complete cds
          Length = 714

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 578 tgggtgcttgtgatggcatccatgcagaagata 610
           |||||||||||||||||||||||| ||||||||
Sbjct: 390 tgggtgcttgtgatggcatccatgaagaagata 358
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>gb|AY058151.1| Arabidopsis thaliana AT4g20870/T13K14_30 mRNA, complete cds
          Length = 1049

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 578 tgggtgcttgtgatggcatccatgcagaagata 610
           |||||||||||||||||||||||| ||||||||
Sbjct: 557 tgggtgcttgtgatggcatccatgaagaagata 525
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>gb|AY044315.1| Arabidopsis thaliana fatty acid hydroxylase-like protein
           (T13K14.30) mRNA, complete cds
          Length = 751

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 578 tgggtgcttgtgatggcatccatgcagaagata 610
           |||||||||||||||||||||||| ||||||||
Sbjct: 390 tgggtgcttgtgatggcatccatgaagaagata 358
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>emb|BX827033.1|CNS0A42J Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB89ZE07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 914

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 578 tgggtgcttgtgatggcatccatgcagaagata 610
           |||||||||||||||||||||||| ||||||||
Sbjct: 420 tgggtgcttgtgatggcatccatgaagaagata 388
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>emb|BX828691.1|CNS0A3KV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL2ZG08 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 956

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 578 tgggtgcttgtgatggcatccatgcagaagata 610
           |||||||||||||||||||||||| ||||||||
Sbjct: 481 tgggtgcttgtgatggcatccatgaagaagata 449
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>emb|BX829252.1|CNS0A3KD Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL84ZE01 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 937

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 578 tgggtgcttgtgatggcatccatgcagaagata 610
           |||||||||||||||||||||||| ||||||||
Sbjct: 443 tgggtgcttgtgatggcatccatgaagaagata 411
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>ref|NM_184996.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 714

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 412 tgcaggtagtagtgtgtgcaatcatagatcacgtagcccaacaggccacctccaaa 467
           |||| ||| ||||| ||||| ||||| ||||| || |||||||||||||| |||||
Sbjct: 554 tgcaagtaatagtgagtgcagtcatacatcacatatcccaacaggccaccaccaaa 499



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 325 ccaaagcccttgttttgaattctgaagtgatggtt 359
           |||||||| |||||||| ||||||||||| |||||
Sbjct: 641 ccaaagcctttgttttggattctgaagtggtggtt 607
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>gb|AC149429.1| Populus trichocarpa clone Pop1-109D09, complete sequence
          Length = 94633

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                     
Query: 412   tgcaggtagtagtgtgtgcaatcatagatcacgtagccca 451
             |||||||||||||| ||||| ||||| ||||| |||||||
Sbjct: 61403 tgcaggtagtagtgagtgcagtcatacatcacatagccca 61364
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                        
Query: 412      tgcaggtagtagtgtgtgcaatcatagatcacgtagcccaacaggccacctccaaa 467
                |||| ||| ||||| ||||| ||||| ||||| || |||||||||||||| |||||
Sbjct: 32073985 tgcaagtaatagtgagtgcagtcatacatcacatatcccaacaggccaccaccaaa 32073930



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 325      ccaaagcccttgttttgaattctgaagtgatggtt 359
                |||||||| |||||||| ||||||||||| |||||
Sbjct: 32074171 ccaaagcctttgttttggattctgaagtggtggtt 32074137
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>gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 genomic sequence, complete
             sequence
          Length = 178158

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                     
Query: 412   tgcaggtagtagtgtgtgcaatcatagatcacgtagcccaacaggccacctccaaa 467
             |||| ||| ||||| ||||| ||||| ||||| || |||||||||||||| |||||
Sbjct: 75110 tgcaagtaatagtgagtgcagtcatacatcacatatcccaacaggccaccaccaaa 75055



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 325   ccaaagcccttgttttgaattctgaagtgatggtt 359
             |||||||| |||||||| ||||||||||| |||||
Sbjct: 75296 ccaaagcctttgttttggattctgaagtggtggtt 75262
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                        
Query: 412      tgcaggtagtagtgtgtgcaatcatagatcacgtagcccaacaggccacctccaaa 467
                |||| ||| ||||| ||||| ||||| ||||| || |||||||||||||| |||||
Sbjct: 32164497 tgcaagtaatagtgagtgcagtcatacatcacatatcccaacaggccaccaccaaa 32164442



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 325      ccaaagcccttgttttgaattctgaagtgatggtt 359
                |||||||| |||||||| ||||||||||| |||||
Sbjct: 32164683 ccaaagcctttgttttggattctgaagtggtggtt 32164649
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>dbj|AK103085.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118H09, full
           insert sequence
          Length = 1229

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 412 tgcaggtagtagtgtgtgcaatcatagatcacgtagcccaacaggccacctccaaa 467
           |||| ||| ||||| ||||| ||||| ||||| || |||||||||||||| |||||
Sbjct: 774 tgcaagtaatagtgagtgcagtcatacatcacatatcccaacaggccaccaccaaa 719



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 325 ccaaagcccttgttttgaattctgaagtgatggtt 359
           |||||||| |||||||| ||||||||||| |||||
Sbjct: 861 ccaaagcctttgttttggattctgaagtggtggtt 827
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>dbj|AK059874.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-F06, full
           insert sequence
          Length = 1045

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 412 tgcaggtagtagtgtgtgcaatcatagatcacgtagcccaacaggccacctccaaa 467
           |||| ||| ||||| ||||| ||||| ||||| || |||||||||||||| |||||
Sbjct: 673 tgcaagtaatagtgagtgcagtcatacatcacatatcccaacaggccaccaccaaa 618



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 325 ccaaagcccttgttttgaattctgaagtgatggtt 359
           |||||||| |||||||| ||||||||||| |||||
Sbjct: 760 ccaaagcctttgttttggattctgaagtggtggtt 726
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>gb|AC147501.9| Medicago truncatula clone mth2-12n2, complete sequence
          Length = 140523

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 579   gggtgcttgtgatggcatccatgcagaagataatg 613
             ||||| ||||| ||||||||||| |||||||||||
Sbjct: 84704 gggtgtttgtggtggcatccatgtagaagataatg 84738
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>emb|AL049646.19|HSDJ568F9 Human DNA sequence from clone RP4-568F9 on chromosome 20 Contains the
             ZNF133 gene for zinc finger protein 133, three novel
             genes, the 3' end of the C20orf12 gene for chromosome 20
             open reading frame 12 and two CpG islands, complete
             sequence
          Length = 155432

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 430   caatcatagatcacgtagcccaa 452
             |||||||||||||||||||||||
Sbjct: 67795 caatcatagatcacgtagcccaa 67773
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>gb|AC008601.7| Homo sapiens chromosome 5 clone CTB-105L4, complete sequence
          Length = 106641

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 11    aaaaattatactggacaccaaca 33
             |||||||||||||||||||||||
Sbjct: 46154 aaaaattatactggacaccaaca 46176
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>ref|XM_419627.1| PREDICTED: Gallus gallus similar to hypothetical protein
           (LOC421589), mRNA
          Length = 2454

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 473 caggagtggtagttgtagtagt 494
           ||||||||||||||||||||||
Sbjct: 512 caggagtggtagttgtagtagt 491
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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 304     tcccacagggtcgatgttattc 325
               ||||||||||||||||||||||
Sbjct: 1271586 tcccacagggtcgatgttattc 1271607
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>gb|AC171141.2| Helobdella robusta clone CH306-1B3, complete sequence
          Length = 94001

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 473   caggagtggtagttgtagtagt 494
             ||||||||||||||||||||||
Sbjct: 14240 caggagtggtagttgtagtagt 14219
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>ref|NM_129030.2| Arabidopsis thaliana FAH1 (FATTY ACID HYDROXYLASE 1); catalytic
           AT2G34770 (FAH1) mRNA, complete cds
          Length = 1142

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 319 gttattccaaagcccttgttttgaattctgaagtgatggttaagatggtatttcttgaga 378
           ||||| ||||| || ||||  ||||| ||||||||||| || | |||||| |||||||||
Sbjct: 886 gttataccaaatcctttgtcctgaatcctgaagtgatgattcaaatggtacttcttgaga 827

            
Query: 379 t 379
           |
Sbjct: 826 t 826
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>ref|XM_363498.1| Magnaporthe grisea 70-15 hypothetical protein (MG01424.4) partial
           mRNA
          Length = 1608

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 316 gatgttattccaaagcccttg 336
           |||||||||||||||||||||
Sbjct: 569 gatgttattccaaagcccttg 549
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>gb|AY341245.1| Homo sapiens chromosome condensation 1-like (CHC1L) gene, complete
            cds
          Length = 37676

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 321  tattccaaagcccttgttttg 341
            |||||||||||||||||||||
Sbjct: 1002 tattccaaagcccttgttttg 982
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>emb|AL157813.11| Human DNA sequence from clone RP11-165D7 on chromosome 13 Contains the
             CHC1L gene for chromosome condensation 1-like, 3 novel
             genes and a CpG island, complete sequence
          Length = 114519

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 321   tattccaaagcccttgttttg 341
             |||||||||||||||||||||
Sbjct: 36116 tattccaaagcccttgttttg 36136
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>gb|BT000482.1| Arabidopsis thaliana fatty acid hydroxylase (FAH1)
           (At2g34770/T29F13.2) mRNA, complete cds
          Length = 714

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 319 gttattccaaagcccttgttttgaattctgaagtgatggttaagatggtatttcttgaga 378
           ||||| ||||| || ||||  ||||| ||||||||||| || | |||||| |||||||||
Sbjct: 647 gttataccaaatcctttgtcctgaatcctgaagtgatgattcaaatggtacttcttgaga 588

            
Query: 379 t 379
           |
Sbjct: 587 t 587
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>gb|AC021010.8| Homo sapiens, clone RP11-69D2, complete sequence
          Length = 187599

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 428    tgcaatcatagatcacgtagcccaa 452
              |||||||||||||||| ||||||||
Sbjct: 165783 tgcaatcatagatcacatagcccaa 165759
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>gb|AC099059.2| Homo sapiens chromosome 3 clone RP11-756A10, complete sequence
          Length = 158576

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 72    aaaaacctctctgtacacatgacaa 96
             |||| ||||||||||||||||||||
Sbjct: 89173 aaaaccctctctgtacacatgacaa 89149
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>gb|AY050326.1| Arabidopsis thaliana At2g34770/T29F13.2 mRNA, complete cds
          Length = 827

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 319 gttattccaaagcccttgttttgaattctgaagtgatggttaagatggtatttcttgaga 378
           ||||| ||||| || ||||  ||||| ||||||||||| || | |||||| |||||||||
Sbjct: 687 gttataccaaatcctttgtcctgaatcctgaagtgatgattcaaatggtacttcttgaga 628

            
Query: 379 t 379
           |
Sbjct: 627 t 627
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>emb|AJ877899.1| Human immunodeficiency virus type 1 subtype A proviral partial
           gp120 gene for envelope glycoprotein gp120, isolate
           97DC.EQTB69 1997
          Length = 584

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 364 tggtatttcttgagatatttt 384
           |||||||||||||||||||||
Sbjct: 28  tggtatttcttgagatatttt 8
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>gb|AF021804.1|AF021804 Arabidopsis thaliana fatty acid hydroxylase Fah1p (FAH1) mRNA,
           complete cds
          Length = 714

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 319 gttattccaaagcccttgttttgaattctgaagtgatggttaagatggtatttcttgaga 378
           ||||| ||||| || ||||  ||||| ||||||||||| || | |||||| |||||||||
Sbjct: 647 gttataccaaatcctttgtcctgaatcctgaagtgatgattcaaatggtacttcttgaga 588

            
Query: 379 t 379
           |
Sbjct: 587 t 587
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>ref|NM_115054.2| Arabidopsis thaliana RNA binding / nucleic acid binding AT3G51950
           transcript variant AT3G51950.1 mRNA, complete cds
          Length = 2486

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 75  aacctctctgtacacatgacaaca 98
           |||||||||||||||| |||||||
Sbjct: 383 aacctctctgtacacaagacaaca 406
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>ref|NM_001035763.1| Arabidopsis thaliana RNA binding / nucleic acid binding AT3G51950
           transcript variant AT3G51950.2 mRNA, complete cds
          Length = 2608

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 75  aacctctctgtacacatgacaaca 98
           |||||||||||||||| |||||||
Sbjct: 417 aacctctctgtacacaagacaaca 440
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>gb|AC124749.5| Mus musculus BAC clone RP23-262G23 from chromosome 5, complete sequence
          Length = 209986

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 467    acacgccaggagtggtagttgtag 490
              ||||||||||||||||||| ||||
Sbjct: 127297 acacgccaggagtggtagtagtag 127320
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>gb|AC126046.3| Mus musculus BAC clone RP23-176P24 from chromosome 19, complete
             sequence
          Length = 240536

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 477   agtggtagttgtagtagtga 496
             ||||||||||||||||||||
Sbjct: 79863 agtggtagttgtagtagtga 79882
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>gb|AC126439.3| Mus musculus BAC clone RP24-290I17 from chromosome 14, complete
             sequence
          Length = 163978

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   tggcattgcaaggtggtaca 249
             ||||||||||||||||||||
Sbjct: 16115 tggcattgcaaggtggtaca 16134
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>gb|AC125464.4| Mus musculus BAC clone RP23-113C9 from 14, complete sequence
          Length = 203804

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 353    gatggttaagatggtatttc 372
              ||||||||||||||||||||
Sbjct: 114144 gatggttaagatggtatttc 114125
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>emb|AL122014.27|HSDJ874H1 Human DNA sequence from clone RP5-874H1 on chromosome 11p12-14.1
             Contains STSs and GSSs, complete sequence
          Length = 98061

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 321   tattccaaagcccttgtttt 340
             ||||||||||||||||||||
Sbjct: 45717 tattccaaagcccttgtttt 45736
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>gb|AC068295.15| Homo sapiens 3 BAC RP11-44H4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 170867

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 450   caacaggccacctccaaacacgccagga 477
             |||||||||||||||| ||| |||||||
Sbjct: 17311 caacaggccacctccagacaagccagga 17338
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>gb|AY080846.1| Arabidopsis thaliana unknown protein (At3g51950) mRNA, complete cds
          Length = 2366

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 75  aacctctctgtacacatgacaaca 98
           |||||||||||||||| |||||||
Sbjct: 383 aacctctctgtacacaagacaaca 406
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>emb|AL672141.12| Mouse DNA sequence from clone RP23-219C18 on chromosome 11 Contains the
              3' end of the Hs3st3a gene for heparan sulfate
              (glucosamine) 3-O-sulfotransferase 3A and a CpG island,
              complete sequence
          Length = 153658

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 77     cctctctgtacacatgacaacata 100
              ||||||||||||| ||||||||||
Sbjct: 136430 cctctctgtacacgtgacaacata 136453
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>emb|AL049711.3|ATF4F15 Arabidopsis thaliana DNA chromosome 3, BAC clone F4F15
          Length = 123209

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 75    aacctctctgtacacatgacaaca 98
             |||||||||||||||| |||||||
Sbjct: 29543 aacctctctgtacacaagacaaca 29520
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>ref|NM_001027786.1| Caenorhabditis elegans Y82E9BL.18 (Y82E9BL.18) mRNA, complete cds
          Length = 1500

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 347 tgaagtgatggttaagatgg 366
           ||||||||||||||||||||
Sbjct: 370 tgaagtgatggttaagatgg 351
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>emb|BX825099.1|CNS0A4VD Arabidopsis thaliana Full-length cDNA Complete sequence from
          clone GSLTPGH9ZE06 of Hormone Treated Callus of strain
          col-0 of Arabidopsis thaliana (thale cress)
          Length = 2030

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 75 aacctctctgtacacatgacaaca 98
          |||||||||||||||| |||||||
Sbjct: 23 aacctctctgtacacaagacaaca 46
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>emb|BX842676.2| Mouse DNA sequence from clone RP24-207B15 on chromosome 4, complete
            sequence
          Length = 13479

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 24   gacaccaacagcccaaatga 43
            ||||||||||||||||||||
Sbjct: 3901 gacaccaacagcccaaatga 3920
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>dbj|BS000088.1| Pan troglodytes chromosome 22 clone:RP43-078B15, map 22, complete
             sequences
          Length = 198333

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 221   cttgatatctggcattgcaaggtg 244
             |||||||||||||||| |||||||
Sbjct: 65962 cttgatatctggcattacaaggtg 65985
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>gb|AC131727.4| Mus musculus BAC clone RP23-120E19 from 14, complete sequence
          Length = 208338

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 230    tggcattgcaaggtggtaca 249
              ||||||||||||||||||||
Sbjct: 193917 tggcattgcaaggtggtaca 193936
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>dbj|AP001688.1| Homo sapiens genomic DNA, chromosome 21q, section 32/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 221  cttgatatctggcattgcaaggtg 244
            |||||||||||||||| |||||||
Sbjct: 6624 cttgatatctggcattacaaggtg 6647
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>dbj|AP002793.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-691L4, complete
             sequence
          Length = 181140

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 334   ttgttttgaattctgaagtg 353
             ||||||||||||||||||||
Sbjct: 99058 ttgttttgaattctgaagtg 99039
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>gb|AC087081.2| Caenorhabditis elegans cosmid Y82E9BL, complete sequence
          Length = 50455

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 347   tgaagtgatggttaagatgg 366
             ||||||||||||||||||||
Sbjct: 24512 tgaagtgatggttaagatgg 24493
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>dbj|AP000965.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B875P4,
             LL56-APP region, complete sequence
          Length = 88046

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 221   cttgatatctggcattgcaaggtg 244
             |||||||||||||||| |||||||
Sbjct: 64808 cttgatatctggcattacaaggtg 64831


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,847,298
Number of Sequences: 3902068
Number of extensions: 4847298
Number of successful extensions: 95614
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95397
Number of HSP's gapped (non-prelim): 208
length of query: 629
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 606
effective length of database: 17,143,297,704
effective search space: 10388838408624
effective search space used: 10388838408624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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