Clone Information

BLAST Search Result

Clone Name	rbags9h18
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RL6_MESCR (P34091) 60S ribosomal protein L6 (YL16-like)	202	7e-61
2	RL6B_YEAST (P05739) 60S ribosomal protein L6-B (L17) (YL16) (RP18)	154	3e-40
3	RL6A_YEAST (Q02326) 60S ribosomal protein L6-A (L17) (YL16) (RP18)	152	1e-39
4	RL6_RAT (P21533) 60S ribosomal protein L6 (Neoplasm-related prot...	141	2e-36
5	RL6_CHILA (Q6QMZ4) 60S ribosomal protein L6	140	5e-36
6	RL6_MOUSE (P47911) 60S ribosomal protein L6 (TAX-responsive enha...	139	6e-36
7	RL6_PIG (Q2YGT9) 60S ribosomal protein L6	138	1e-35
8	RL6_HUMAN (Q02878) 60S ribosomal protein L6 (TAX-responsive enha...	138	2e-35
9	RL6_BOVIN (Q58DQ3) 60S ribosomal protein L6	136	5e-35
10	RL6_SCHPO (P79071) 60S ribosomal protein L6	135	5e-34
11	RL6_CAEEL (P47991) 60S ribosomal protein L6	118	2e-26
12	RL14E_SULAC (Q4JAJ9) 50S ribosomal protein L14e	44	3e-04
13	RL14E_SULSO (Q980C1) 50S ribosomal protein L14e	42	0.001
14	RL14E_SULTO (Q975L7) 50S ribosomal protein L14e	41	0.004
15	RL14E_PYRAE (Q8ZYB4) 50S ribosomal protein L14e	39	0.014
16	RL14E_AERPE (Q9YDD7) 50S ribosomal protein L14e	36	0.12
17	RL14E_METKA (Q8TX43) 50S ribosomal protein L14e	35	0.16
18	CYL1_BOVIN (P35662) Cylicin-1 (Cylicin I) (Multiple-band polypep...	33	0.59
19	CYLC2_HUMAN (Q14093) Cylicin-2 (Cylicin II) (Multiple-band polyp...	32	1.7
20	V51K_BPL79 (P24125) 51.5 kDa protein	32	1.7
21	Y1420_CLOAB (Q97J66) Protein CAC1420	32	2.3
22	RL14E_PYRFU (Q8U2L5) 50S ribosomal protein L14e	32	2.3
23	H1_MAIZE (P23444) Histone H1	31	2.9
24	YKF4_YEAST (P35732) Hypothetical 84.0 kDa protein in NUP120-CSE4...	31	3.8
25	BIP5_TOBAC (Q03685) Luminal-binding protein 5 precursor (BiP 5) ...	31	3.8
26	RL27_YEAST (P38706) 60S ribosomal protein L27	30	5.0
27	FAS1_SCHAM (P10675) Fasciclin-1 precursor (Fasciclin I) (FAS I) ...	30	5.0
28	RL27_CANAL (Q9P843) 60S ribosomal protein L27	30	6.6
29	RPOB_CAMJR (Q5HVY9) DNA-directed RNA polymerase beta chain (EC 2...	30	6.6
30	RPOB_CAMJE (Q46124) DNA-directed RNA polymerase beta chain (EC 2...	30	6.6
31	MYPT1_RAT (Q10728) Protein phosphatase 1 regulatory subunit 12A ...	30	8.6
32	GGLO_RAT (P10867) L-gulonolactone oxidase (EC 1.1.3.8) (LGO) (L-...	30	8.6
33	MLP2_YEAST (P40457) Protein MLP2 (Myosin-like protein 2)	30	8.6
34	MASS1_HUMAN (Q8WXG9) Monogenic audiogenic seizure susceptibility...	30	8.6
35	MYPT1_HUMAN (O14974) Protein phosphatase 1 regulatory subunit 12...	30	8.6
36	YLD2_CAEEL (Q03567) Hypothetical protein C38C10.2 in chromosome III	30	8.6
37	RL14E_PYRKO (Q5JJE4) 50S ribosomal protein L14e	30	8.6
38	RL14E_PYRHO (P59937) 50S ribosomal protein L14e	30	8.6
39	RL14E_PYRAB (Q9UZJ5) 50S ribosomal protein L14e	30	8.6

>RL6_MESCR (P34091) 60S ribosomal protein L6 (YL16-like)|
          Length = 234

 Score =  202 bits (513), Expect(2) = 7e-61
 Identities = 96/141 (68%), Positives = 119/141 (84%)
 Frame = -3

Query: 548 TVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVISTSTRLDISKVN 369
           TVLI+LAGR+ GKRVVFLKQL SGLLL+TGPFK+NGVP+RRVNQAYVI+TST++DIS VN
Sbjct: 94  TVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVN 153

Query: 368 MQKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIKAIDAVPDL 189
           ++KFDDKYF ++ + + KK EGE FE+EK+    LP  KKDDQK +D  L+KAI+ VP+L
Sbjct: 154 VEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIEGVPEL 213

Query: 188 KSYLGARFSLRDGDKPHEMTF 126
           K+YLGARFSL+ G KPHE+ F
Sbjct: 214 KAYLGARFSLKAGMKPHELVF 234



 Score = 52.4 bits (124), Expect(2) = 7e-61
 Identities = 24/40 (60%), Positives = 28/40 (70%)
 Frame = -2

Query: 669 AEKPAAVAEPKFYPADDVKPRTFSTRKPHPTKLRSTITPG 550
           A+  A    PKFYPADDVK    + RKP PTKLR++ITPG
Sbjct: 54  ADSKAVEKPPKFYPADDVKKPLINKRKPKPTKLRASITPG 93

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>RL6B_YEAST (P05739) 60S ribosomal protein L6-B (L17) (YL16) (RP18)|
          Length = 175

 Score =  154 bits (389), Expect(2) = 3e-40
 Identities = 76/141 (53%), Positives = 103/141 (73%)
 Frame = -3

Query: 548 TVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVISTSTRLDISKVN 369
           TVLILLAGR+ GKRVV+LK L+   LL+TGPFK+NGVP+RRVN  YVI+TST++ +  VN
Sbjct: 37  TVLILLAGRFRGKRVVYLKHLEDNTLLVTGPFKVNGVPLRRVNARYVIATSTKVSVEGVN 96

Query: 368 MQKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIKAIDAVPDL 189
           ++KF+ +YFA+EK T+ +K E  LF  ++  TK +   + +DQKV+D  L+  I   P L
Sbjct: 97  VEKFNVEYFAKEKLTKKEKKEANLFPEQQ--TKEIKTERVEDQKVVDKALLAEIKKTPLL 154

Query: 188 KSYLGARFSLRDGDKPHEMTF 126
           K YL A FSL++GDKPH + F
Sbjct: 155 KQYLSASFSLKNGDKPHLLKF 175



 Score = 30.8 bits (68), Expect(2) = 3e-40
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 642 PKFYPADDVKPRTFSTRKPHPTKLRSTITPG 550
           PK+YP++DV     + +   P KLR+++ PG
Sbjct: 6   PKWYPSEDVAAPKKTRKAVRPQKLRASLVPG 36

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>RL6A_YEAST (Q02326) 60S ribosomal protein L6-A (L17) (YL16) (RP18)|
          Length = 175

 Score =  152 bits (383), Expect(2) = 1e-39
 Identities = 76/141 (53%), Positives = 102/141 (72%)
 Frame = -3

Query: 548 TVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVISTSTRLDISKVN 369
           TVLILLAGR+ GKRVV+LK L+   LLI+GPFK+NGVP+RRVN  YVI+TST++ +  VN
Sbjct: 37  TVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVN 96

Query: 368 MQKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIKAIDAVPDL 189
           ++KF+ +YFA+EK T+ +K E  LF  ++   K +   + +DQKV+D  LI  I   P L
Sbjct: 97  VEKFNVEYFAKEKLTKKEKKEANLFPEQQ--NKEIKAERVEDQKVVDKALIAEIKKTPLL 154

Query: 188 KSYLGARFSLRDGDKPHEMTF 126
           K YL A FSL++GDKPH + F
Sbjct: 155 KQYLSASFSLKNGDKPHMLKF 175



 Score = 31.6 bits (70), Expect(2) = 1e-39
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 657 AAVAEPKFYPADDVKPRTFSTRKPHPTKLRSTITPG 550
           +A   PK+YP++DV     + +   P KLR+++ PG
Sbjct: 1   SAQKAPKWYPSEDVAALKKTRKAARPQKLRASLVPG 36

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>RL6_RAT (P21533) 60S ribosomal protein L6 (Neoplasm-related protein C140)|
          Length = 297

 Score =  141 bits (355), Expect(2) = 2e-36
 Identities = 71/142 (50%), Positives = 104/142 (73%), Gaps = 1/142 (0%)
 Frame = -3

Query: 548 TVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVISTSTRLDISKVN 369
           TVLI+L GR+ GKRVVFLKQL SGLLL+TGP  +N VP+RR +Q +VI+TST++DISKV 
Sbjct: 157 TVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVK 216

Query: 368 MQK-FDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIKAIDAVPD 192
           + K   D YF ++   + +  EGE+F++EKE  + + + +K DQK +D++++  I AVP 
Sbjct: 217 IPKHLTDAYFKKKPLRKPRHQEGEIFDTEKEKYE-ITEQRKADQKAVDSQILPKIKAVPQ 275

Query: 191 LKSYLGARFSLRDGDKPHEMTF 126
           L+ YL ++FSL +G  PH++ F
Sbjct: 276 LQGYLRSQFSLTNGMYPHKLVF 297



 Score = 31.2 bits (69), Expect(2) = 2e-36
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
 Frame = -2

Query: 642 PKFYPADDVKPRTFST-RKP---HPTKLRSTITPG 550
           P++YP +DV  +  S  +KP   H  +LRS+ITPG
Sbjct: 122 PRYYPTEDVPRKLLSHGKKPFSQHVRRLRSSITPG 156

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>RL6_CHILA (Q6QMZ4) 60S ribosomal protein L6|
          Length = 287

 Score =  140 bits (352), Expect(2) = 5e-36
 Identities = 70/142 (49%), Positives = 103/142 (72%), Gaps = 1/142 (0%)
 Frame = -3

Query: 548 TVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVISTSTRLDISKVN 369
           TVLI+L GR+ GKRVVFLKQL SGLLL+TGP  +N VP+RR +Q +VI+TST++DIS V 
Sbjct: 147 TVLIILTGRHRGKRVVFLKQLASGLLLVTGPLNLNRVPLRRTHQKFVIATSTKIDISNVK 206

Query: 368 MQK-FDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIKAIDAVPD 192
           + K   D YF ++K  + +  EGE+F++EKE  + + + +K DQK +D++++  I AVP 
Sbjct: 207 IPKHLTDAYFKKKKLRKPRHQEGEIFDTEKERYQ-ISEQRKVDQKAVDSQILPKIKAVPQ 265

Query: 191 LKSYLGARFSLRDGDKPHEMTF 126
           L+ YL + F+L +G  PH++ F
Sbjct: 266 LRGYLRSVFALTNGIYPHKLVF 287



 Score = 31.2 bits (69), Expect(2) = 5e-36
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
 Frame = -2

Query: 642 PKFYPADDVKPRTFST-RKP---HPTKLRSTITPG 550
           P++YP +DV  +  S  +KP   H  KLR++ITPG
Sbjct: 112 PRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPG 146

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>RL6_MOUSE (P47911) 60S ribosomal protein L6 (TAX-responsive enhancer|
           element-binding protein 107) (TAXREB107)
          Length = 295

 Score =  139 bits (351), Expect(2) = 6e-36
 Identities = 71/142 (50%), Positives = 103/142 (72%), Gaps = 1/142 (0%)
 Frame = -3

Query: 548 TVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVISTSTRLDISKVN 369
           TVLI+L GR+ GKRVVFLKQL SGLLL+TGP  IN VP+RR +Q +VI+TST++DIS V 
Sbjct: 155 TVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVK 214

Query: 368 MQK-FDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIKAIDAVPD 192
           + K   D YF +++  + +  EGE+F++EKE  + + + +K DQK +D +++  I AVP 
Sbjct: 215 IPKHLTDAYFKKKQLRKPRHQEGEIFDTEKEKYE-ITEQRKADQKAVDLQILPKIKAVPQ 273

Query: 191 LKSYLGARFSLRDGDKPHEMTF 126
           L+ YL ++FSL +G  PH++ F
Sbjct: 274 LQGYLRSQFSLTNGMYPHKLVF 295



 Score = 31.2 bits (69), Expect(2) = 6e-36
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
 Frame = -2

Query: 642 PKFYPADDVKPRTFST-RKP---HPTKLRSTITPG 550
           P++YP +DV  +  S  +KP   H  +LRS+ITPG
Sbjct: 120 PRYYPTEDVPRKLLSHGKKPFSQHVRRLRSSITPG 154

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>RL6_PIG (Q2YGT9) 60S ribosomal protein L6|
          Length = 283

 Score =  138 bits (348), Expect(2) = 1e-35
 Identities = 67/142 (47%), Positives = 104/142 (73%), Gaps = 1/142 (0%)
 Frame = -3

Query: 548 TVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVISTSTRLDISKVN 369
           T+LI+L GR+ GKRV+FLKQL SGLLL+TGP  +N VP+RR +Q +VI+TST++DIS V 
Sbjct: 143 TILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVK 202

Query: 368 M-QKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIKAIDAVPD 192
           + +   D YF ++K  + +  EGE+F++EKE  + + + +K DQK +D+++++ I AVP 
Sbjct: 203 IPEHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYE-ISEQRKVDQKAVDSQILRRIKAVPQ 261

Query: 191 LKSYLGARFSLRDGDKPHEMTF 126
           L+ YL + F+L +G  PH++ F
Sbjct: 262 LQGYLRSVFALTNGIYPHKLVF 283



 Score = 31.2 bits (69), Expect(2) = 1e-35
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
 Frame = -2

Query: 642 PKFYPADDVKPRTFST-RKP---HPTKLRSTITPG 550
           P++YP +DV  +  S  +KP   H  KLR++ITPG
Sbjct: 108 PRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPG 142

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>RL6_HUMAN (Q02878) 60S ribosomal protein L6 (TAX-responsive enhancer|
           element-binding protein 107) (TAXREB107)
           (Neoplasm-related protein C140)
          Length = 287

 Score =  138 bits (347), Expect(2) = 2e-35
 Identities = 68/142 (47%), Positives = 103/142 (72%), Gaps = 1/142 (0%)
 Frame = -3

Query: 548 TVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVISTSTRLDISKVN 369
           T+LI+L GR+ GKRVVFLKQL SGLLL+TGP  +N VP+RR +Q +VI+TST++DIS V 
Sbjct: 147 TILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVK 206

Query: 368 MQK-FDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIKAIDAVPD 192
           + K   D YF ++K  + +  EGE+F++EKE  + + + +K DQK +D++++  I A+P 
Sbjct: 207 IPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYE-ITEQRKIDQKAVDSQILPKIKAIPQ 265

Query: 191 LKSYLGARFSLRDGDKPHEMTF 126
           L+ YL + F+L +G  PH++ F
Sbjct: 266 LQGYLRSVFALTNGIYPHKLVF 287



 Score = 31.2 bits (69), Expect(2) = 2e-35
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
 Frame = -2

Query: 642 PKFYPADDVKPRTFST-RKP---HPTKLRSTITPG 550
           P++YP +DV  +  S  +KP   H  KLR++ITPG
Sbjct: 112 PRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPG 146

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>RL6_BOVIN (Q58DQ3) 60S ribosomal protein L6|
          Length = 286

 Score =  136 bits (343), Expect(2) = 5e-35
 Identities = 67/142 (47%), Positives = 104/142 (73%), Gaps = 1/142 (0%)
 Frame = -3

Query: 548 TVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVISTSTRLDISKVN 369
           T+LI+L GR+ GKRVVFLKQL SGLLL+TGP  +N VP+RR +Q +VI+TST++DIS V 
Sbjct: 146 TILIILTGRHRGKRVVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVK 205

Query: 368 M-QKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIKAIDAVPD 192
           + +   D YF ++K  + +  EGE+F++E+E  + + + +K DQK +D+++++ I AVP 
Sbjct: 206 IPEHLTDTYFKKKKLRKPRHQEGEIFDTEREKYE-ITEQRKVDQKAVDSQILRRIKAVPQ 264

Query: 191 LKSYLGARFSLRDGDKPHEMTF 126
           L+ YL + F+L +G  PH++ F
Sbjct: 265 LQGYLRSVFALTNGIYPHKVVF 286



 Score = 31.2 bits (69), Expect(2) = 5e-35
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
 Frame = -2

Query: 642 PKFYPADDVKPRTFST-RKP---HPTKLRSTITPG 550
           P++YP +DV  +  S  +KP   H  KLR++ITPG
Sbjct: 111 PRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPG 145

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>RL6_SCHPO (P79071) 60S ribosomal protein L6|
          Length = 194

 Score =  135 bits (339), Expect(2) = 5e-34
 Identities = 71/142 (50%), Positives = 100/142 (70%), Gaps = 1/142 (0%)
 Frame = -3

Query: 548 TVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVISTST-RLDISKV 372
           TV ILLAGR+ GKRVV L QL+   L++TGP+K+NGVPIRRVN  YVI+TS  ++D+S V
Sbjct: 55  TVCILLAGRFRGKRVVVLSQLED-TLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGV 113

Query: 371 NMQKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIKAIDAVPD 192
           +++KF   YFA++K++   K + E F +E      LP  +  DQK +D +L+ AI A+P+
Sbjct: 114 SVEKFTKAYFAKQKRSGPVKKD-EAFFAENAPKNALPAERIADQKAVDAKLLPAIKAIPN 172

Query: 191 LKSYLGARFSLRDGDKPHEMTF 126
           +K YL A F+L +GD+PH M F
Sbjct: 173 MKEYLAASFALSNGDRPHLMKF 194



 Score = 29.3 bits (64), Expect(2) = 5e-34
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 660 PAAVAEPKFYPADDVKPRTFSTRKPHPTKLRSTITPG 550
           PA  A  K+YPA        + +   PTKLR+++ PG
Sbjct: 18  PAGEAAAKYYPAYRENVPKKARKAVRPTKLRASLAPG 54

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>RL6_CAEEL (P47991) 60S ribosomal protein L6|
          Length = 217

 Score =  118 bits (295), Expect = 2e-26
 Identities = 70/146 (47%), Positives = 98/146 (67%), Gaps = 5/146 (3%)
 Frame = -3

Query: 548 TVLILLAGRYMGKRVVFLKQL-KSGLLLITGPFKINGVPIRRVNQAYVISTSTRLDISKV 372
           TVLI+LAGR+ GKRVVFLKQL +SGLLL+TGP KING P+RR+ QA+VI+TS ++++S V
Sbjct: 75  TVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGV 134

Query: 371 NM-QKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIKAIDAVP 195
            + +  +D+YF R  K+ A+K+   +F S K     + + +K D K +D  ++ AI   P
Sbjct: 135 KIPEHINDEYFKR--KSTAQKTGKNIFASGK-TEYTVSEQRKKDIKTVDAPILAAIKKHP 191

Query: 194 DLK---SYLGARFSLRDGDKPHEMTF 126
           + K    YLG RFSL     PH+M F
Sbjct: 192 EHKFLFGYLGTRFSLGKNQYPHKMQF 217

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>RL14E_SULAC (Q4JAJ9) 50S ribosomal protein L14e|
          Length = 96

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 21/57 (36%), Positives = 35/57 (61%)
 Frame = -3

Query: 545 VLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVISTSTRLDISK 375
           + +   GR  GK+ V +  + S  +L+TGP +INGV  RRVN  ++  T  +++I+K
Sbjct: 9   ICVKTRGREAGKKCVIVDIIDSNFVLVTGPKEINGVKRRRVNILHIEPTDKKVEINK 65

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>RL14E_SULSO (Q980C1) 50S ribosomal protein L14e|
          Length = 96

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 27/92 (29%), Positives = 43/92 (46%)
 Frame = -3

Query: 545 VLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVISTSTRLDISKVNM 366
           + + + GR  G + V +  +    +L+TGP  I GV  RRVN  ++  T  ++DI K   
Sbjct: 9   ICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKIDIQK--- 65

Query: 365 QKFDDKYFAREKKTRAKKSEGELFESEKEATK 270
                   A +++ + K  E  L E  KE  K
Sbjct: 66  -------GASDEEVKKKLEESNLTEYMKEKIK 90

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>RL14E_SULTO (Q975L7) 50S ribosomal protein L14e|
          Length = 96

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 26/92 (28%), Positives = 43/92 (46%)
 Frame = -3

Query: 545 VLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVISTSTRLDISKVNM 366
           + +   GR  GK+ V +  +    +L+TGP  +N V  RRVN  ++  T  ++DI+K   
Sbjct: 9   ICVKTRGREAGKKCVIVDIIDENFVLVTGPKDVNKVKRRRVNILHLEPTDKKIDINK--- 65

Query: 365 QKFDDKYFAREKKTRAKKSEGELFESEKEATK 270
                   A + + + K  E  L E  K+  K
Sbjct: 66  -------GASDDEVKKKLEEAGLIEFMKQDVK 90

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>RL14E_PYRAE (Q8ZYB4) 50S ribosomal protein L14e|
          Length = 103

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 19/57 (33%), Positives = 33/57 (57%)
 Frame = -3

Query: 545 VLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVISTSTRLDISK 375
           V++ + GR  G++ V +  +    ++ITGP  I GV  RRVN  ++  T  ++DI +
Sbjct: 10  VVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDIKR 66

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>RL14E_AERPE (Q9YDD7) 50S ribosomal protein L14e|
          Length = 100

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = -3

Query: 545 VLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVISTSTRLDISK 375
           + +   GR  G++ V +  +    +L+TGP  + GV  RRVN  ++     ++DI K
Sbjct: 10  ICVKTRGREAGRKCVIVDIIDENFVLVTGPKSLTGVRRRRVNIDHIEILDKKVDIQK 66

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>RL14E_METKA (Q8TX43) 50S ribosomal protein L14e|
          Length = 94

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = -3

Query: 545 VLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVISTSTRLDISK 375
           + +  AGR  GK  V +  +    ++ITGP  + GV  RR N  ++  T  ++DI +
Sbjct: 10  ICVKTAGREAGKYCVVVDIVDENFVIITGPKDVTGVKRRRCNIKHLEPTPEKVDIDR 66

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>CYL1_BOVIN (P35662) Cylicin-1 (Cylicin I) (Multiple-band polypeptide I)|
          Length = 667

 Score = 33.5 bits (75), Expect = 0.59
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
 Frame = -3

Query: 371 NMQKFDDKYFAREKKTRAKK----------SEGELFESEKEATKNLPDFKKDDQKVIDTE 222
           N +K   K    +KK  AKK          SEG+  +S+K++ K+  D KKDDQK    +
Sbjct: 442 NAKKDSKKGKKDDKKKDAKKDAVSTDADSESEGDAKKSKKDSKKDKKDLKKDDQKKPAMK 501

Query: 221 LIKAIDAVPDLKSYLGARFSLRDGDK 144
             ++ +   D +S    R S +D  K
Sbjct: 502 SKESTETESDWESKKVKRDSKKDTKK 527

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>CYLC2_HUMAN (Q14093) Cylicin-2 (Cylicin II) (Multiple-band polypeptide II)|
          Length = 348

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -3

Query: 353 DKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIKA 210
           DK  + + K  A +SEGE   +EK++ K   D KK     I+ + +KA
Sbjct: 192 DKKDSNKGKDSATESEGEKGGTEKDSKKGKKDSKKGKDSAIELQAVKA 239

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>V51K_BPL79 (P24125) 51.5 kDa protein|
          Length = 452

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -3

Query: 515 GKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVISTSTRLDI 381
           G RV+FL   K  +  IT  FK++GVP+ +V    V     RL +
Sbjct: 25  GGRVLFLVHRKELIDQITNSFKVHGVPLNQVELLTVGKAKNRLSV 69

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>Y1420_CLOAB (Q97J66) Protein CAC1420|
          Length = 468

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 19/114 (16%), Positives = 53/114 (46%)
 Frame = -3

Query: 494 KQLKSGLLLITGPFKINGVPIRRVNQAYVISTSTRLDISKVNMQKFDDKYFAREKKTRAK 315
           K+ K  +L   G F + G  + ++ +A+   TS   ++ ++   +++ K   ++   +  
Sbjct: 248 KKFKGEILSYEGTFGV-GYGVMKL-EAFSNDTSKLKELERIRKDEYESKKQEKDPYVKLA 305

Query: 314 KSEGELFESEKEATKNLPDFKKDDQKVIDTELIKAIDAVPDLKSYLGARFSLRD 153
           +     + +  EA + +PD+  ++ + +   +  ++    DL+  +G  F + D
Sbjct: 306 RESLTQYLTTGEAIEEIPDYVTEEMRDLKRGVFVSLKKFGDLRGCIGTIFPVTD 359

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>RL14E_PYRFU (Q8U2L5) 50S ribosomal protein L14e|
          Length = 83

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 16/57 (28%), Positives = 33/57 (57%)
 Frame = -3

Query: 545 VLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVISTSTRLDISK 375
           + +++AGR  G++VV +  +    +L+TG   +N V  RR+N  ++     ++DI +
Sbjct: 9   IAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRMNIKHIEPLPQKIDIPR 64

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>H1_MAIZE (P23444) Histone H1|
          Length = 245

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -2

Query: 669 AEKPAAVAEPKFYPADDVKPRTFSTRKPHP-TKLRSTITPGHGADPARGEVHGEARRVPQ 493
           A+KP A A+PK       KP T    KP P  K ++ + P     PA+ +    A+  P+
Sbjct: 137 AKKPKAAAKPKAKTPAKAKPAT----KPKPAAKPKAVVKP---KTPAKPKAKPAAKAKPK 189

Query: 492 AAQVRPAP 469
            A  +P P
Sbjct: 190 TAGAKPKP 197

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>YKF4_YEAST (P35732) Hypothetical 84.0 kDa protein in NUP120-CSE4 intergenic|
           region
          Length = 738

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 21/65 (32%), Positives = 29/65 (44%)
 Frame = -3

Query: 431 RRVNQAYVISTSTRLDISKVNMQKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFK 252
           +++ Q  + S  T    S    +K      A  K    KK+E  L E+  E  K + D K
Sbjct: 218 KQIEQPSLSSKKTTSRTSASQPKKMSWAAIATPKPKAVKKTESPL-ENVAELKKEISDIK 276

Query: 251 KDDQK 237
           KDDQK
Sbjct: 277 KDDQK 281

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>BIP5_TOBAC (Q03685) Luminal-binding protein 5 precursor (BiP 5) (78 kDa|
           glucose-regulated protein homolog 5) (GRP 78-5)
          Length = 668

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 16/92 (17%)
 Frame = -3

Query: 422 NQAYVISTSTRLDISKVNMQKFDDKYFAREKK----------------TRAKKSEGELFE 291
           NQA V    T  D+ ++  +KFDDK   R+KK                 + K  E ++F 
Sbjct: 89  NQAAVNPERTIFDVKRLIGRKFDDKEVQRDKKLVPYEIVNKDGKPYIQVKIKDGETKVFS 148

Query: 290 SEKEATKNLPDFKKDDQKVIDTELIKAIDAVP 195
            E+ +   L   K+  +  +  ++  A+  VP
Sbjct: 149 PEEISAMILTKMKETAEAYLGKKIKDAVVTVP 180

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>RL27_YEAST (P38706) 60S ribosomal protein L27|
          Length = 136

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 25/124 (20%)
 Frame = -3

Query: 545 VLILLAGRYMGKRVVFLKQLKSGL-------LLITG----PFKI---NGVP--------- 435
           V +++ GRY GK+VV +K    G         L+ G    P K+   +G           
Sbjct: 10  VAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIK 69

Query: 434 --IRRVNQAYVISTSTRLDISKVNMQKFDDKYFAREKKTRAKKSEGELFESEKEATKNLP 261
             I+ VN  +++ T   LD+         + +    ++  AKK   + FE   +A KN  
Sbjct: 70  PFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQW 129

Query: 260 DFKK 249
            F K
Sbjct: 130 FFSK 133

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>FAS1_SCHAM (P10675) Fasciclin-1 precursor (Fasciclin I) (FAS I) (FCN)|
          Length = 662

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -3

Query: 407 ISTSTRLDISKVNMQKFDDKYFAREKKTRAK-KSEGELFESEKEATKNLPDFKKDDQKVI 231
           ++ S  LD+    ++ F  + F  +K+   K + +   F    E  K LP  +K DQKVI
Sbjct: 174 LNQSENLDLGLHRVRSFRQRVFQNQKQNDFKLEGKHTFFIPVDEGFKPLPRPEKIDQKVI 233

Query: 230 DTELI 216
           D  +I
Sbjct: 234 DGHII 238

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>RL27_CANAL (Q9P843) 60S ribosomal protein L27|
          Length = 136

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 25/124 (20%)
 Frame = -3

Query: 545 VLILLAGRYMGKRVVFLKQLKSGL-------LLITG----PFKINGVP------------ 435
           V I++ GRY GK+VV +K    G         ++ G    P K+                
Sbjct: 10  VAIVVRGRYAGKKVVIVKPHDEGTKSHPFPHAIVAGIERAPLKVTKKMDAKKVTKRTKVK 69

Query: 434 --IRRVNQAYVISTSTRLDISKVNMQKFDDKYFAREKKTRAKKSEGELFESEKEATKNLP 261
             ++ VN  +++ T   LD+         +      ++  AKK   + FE + +A KN  
Sbjct: 70  PFVKLVNYNHLMPTRYSLDVESFKSAVTSEALEEPSQREEAKKVVKKAFEEKHQAGKNKW 129

Query: 260 DFKK 249
            F+K
Sbjct: 130 FFQK 133

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>RPOB_CAMJR (Q5HVY9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1378

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
 Frame = -3

Query: 257 FKKDDQKVIDTELIKAIDAVPDLKSYLGARFSLRD---------GDKPHEMTF*VIWYKF 105
           FK+++   +  +L+     +PD  S+L   +  +D            P  M F  + YK 
Sbjct: 161 FKEEESSTVANKLVYTAQIIPDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGYKK 220

Query: 104 QDLWKVFF 81
           QD+ K+F+
Sbjct: 221 QDIIKLFY 228

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>RPOB_CAMJE (Q46124) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1378

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
 Frame = -3

Query: 257 FKKDDQKVIDTELIKAIDAVPDLKSYLGARFSLRD---------GDKPHEMTF*VIWYKF 105
           FK+++   +  +L+     +PD  S+L   +  +D            P  M F  + YK 
Sbjct: 161 FKEEESSTVANKLVYTAQIIPDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGYKK 220

Query: 104 QDLWKVFF 81
           QD+ K+F+
Sbjct: 221 QDIIKLFY 228

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>MYPT1_RAT (Q10728) Protein phosphatase 1 regulatory subunit 12A (Myosin|
            phosphatase-targeting subunit 1) (Myosin phosphatase
            target subunit 1) (Protein phosphatase myosin-binding
            subunit) (MBSP) (Serine/threonine protein phosphatase PP1
            smooth muscle reg
          Length = 1032

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -3

Query: 401  TSTRLDISKVNM--QKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVID 228
            T  +L + K     ++F D+     +K   +  E  + E E+E  K LPD K D+Q++ D
Sbjct: 960  TDLKLQLEKATQRQERFADRSLLEMEKRERRALERRISEMEEEL-KMLPDLKADNQRLKD 1018

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>GGLO_RAT (P10867) L-gulonolactone oxidase (EC 1.1.3.8) (LGO)|
           (L-gulono-gamma-lactone oxidase) (GLO)
          Length = 439

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 63  PEHTLEKKDFPQILKLVPDNLEGHLMR 143
           P+  L++  FP  LK V DNL+ HL R
Sbjct: 185 PQFHLQETSFPSTLKEVLDNLDSHLKR 211

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>MLP2_YEAST (P40457) Protein MLP2 (Myosin-like protein 2)|
          Length = 1679

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = -3

Query: 404  STSTRLDISKVNMQKFDDKYFAREKKTRAKKSEGEL---FESEKEATKNLPDFKKDDQKV 234
            S+S   +  KVNM+K  D+      K   KK +  L     SE E +K++   KK+  K 
Sbjct: 1380 SSSDAFEKLKVNMEKEKDRIIDERTKEFEKKLQETLNKSTSSEAEYSKDIETLKKEWLKE 1439

Query: 233  IDTELIKAI-DAVPDLK 186
             + E ++ I +A  +LK
Sbjct: 1440 YEDETLRRIKEAEENLK 1456

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>MASS1_HUMAN (Q8WXG9) Monogenic audiogenic seizure susceptibility protein 1|
            homolog precursor (Very large G-protein coupled receptor
            1) (Usher syndrome type-2C protein) (G-protein coupled
            receptor 98)
          Length = 6307

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -2

Query: 585  HPTKLRSTITPGHGADPARGEVHGEARRVPQA-AQVRPAPHHWTFQDQWRANPQSEP 418
            HP    +  TPG G  PA GE+    + +  A  +V P     +FQ   +A+P  +P
Sbjct: 6175 HPGPSTAFFTPGSGMPPAGGEISKSTQNLIGAMEEVPPDWERASFQQGSQASPDLKP 6231

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>MYPT1_HUMAN (O14974) Protein phosphatase 1 regulatory subunit 12A (Myosin|
            phosphatase-targeting subunit 1) (Myosin phosphatase
            target subunit 1) (Protein phosphatase myosin-binding
            subunit)
          Length = 1030

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -3

Query: 401  TSTRLDISKVNM--QKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVID 228
            T  +L + K     ++F D+     +K   +  E  + E E+E  K LPD K D+Q++ D
Sbjct: 958  TDLKLQLEKATQRQERFADRSLLEMEKRERRALERRISEMEEEL-KMLPDLKADNQRLKD 1016

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>YLD2_CAEEL (Q03567) Hypothetical protein C38C10.2 in chromosome III|
          Length = 493

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = -3

Query: 533 LAGRYMGKRVVFLKQLKSGLLLITGP 456
           LA RY GKRVVF+  L S LL +  P
Sbjct: 104 LASRYGGKRVVFVTILGSALLTLLNP 129

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>RL14E_PYRKO (Q5JJE4) 50S ribosomal protein L14e|
          Length = 83

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 16/57 (28%), Positives = 32/57 (56%)
 Frame = -3

Query: 545 VLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVISTSTRLDISK 375
           + +++AGR  G++VV    +    +L+TG   +N V  RR+N  ++     R++I +
Sbjct: 9   IAVVIAGRRAGQKVVVADIIDKNFVLVTGA-GLNKVKRRRMNVKHLEPLPERVNIQR 64

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>RL14E_PYRHO (P59937) 50S ribosomal protein L14e|
          Length = 82

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 15/57 (26%), Positives = 32/57 (56%)
 Frame = -3

Query: 545 VLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVISTSTRLDISK 375
           + +++AGR  G++ V +  +    +L+TG   +N V  RR+N  ++     ++DI +
Sbjct: 9   IAVIIAGRRAGQKCVIVDIIDKNFVLVTGA-GLNKVKRRRMNIKHLEPLPEKIDIPR 64

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>RL14E_PYRAB (Q9UZJ5) 50S ribosomal protein L14e|
          Length = 82

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 15/57 (26%), Positives = 32/57 (56%)
 Frame = -3

Query: 545 VLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVISTSTRLDISK 375
           + +++AGR  G++ V +  +    +L+TG   +N V  RR+N  ++     ++DI +
Sbjct: 9   IAVIIAGRRAGQKCVIVDIIDKNFVLVTGA-GLNKVKRRRMNIKHLEPLPEKIDIPR 64


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,188,775
Number of Sequences: 219361
Number of extensions: 1669269
Number of successful extensions: 6226
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 5922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6189
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6484657212
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result