Clone Name | rbags9h17 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009285.1| Triticum aestivum clone wlm0.pk0010.f6:fis, full insert mRNA sequence Length = 1418 Score = 995 bits (502), Expect = 0.0 Identities = 602/634 (94%), Gaps = 11/634 (1%) Strand = Plus / Minus Query: 52 taacacacaacaagaaatcactgatcatcattgagtaaagggtgcaccgtgaacaacttg 111 ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 1140 taacacacaacaagaaaccactgatcattattgagtaaagggtgcaccgtgaacaacttg 1081 Query: 112 ctttacccactaaggaagcgtacagactcagttttattggatagatgaataacagttgca 171 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1080 ctttacccactgaggaagcgtacagactcagttttattggatagatgaataacagttgca 1021 Query: 172 gccttttaaatgaac---aggagccacccggcgct----gcaggctagcgccaccgcaac 224 ||||| ||||||||| ||||||| ||| | ||| ||||||||||||||||||||| Sbjct: 1020 gccttctaaatgaacaataggagccgccccgtgctgcaggcaggctagcgccaccgcaac 961 Query: 225 gctgctagggcctgcccatgaacacgggaatctccggctgccaccacgttgaaacttgtt 284 ||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct: 960 gctgccagggcctgcccatggacatgggaatctccggctgccaccacgttgaaacttgtt 901 Query: 285 ggccgagattccgaagagacaggccagtggagcttgttcccttcccagtcagttattgag 344 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 900 ggccgagattccgaagagacaggccagtggagcttgttcccttcccaatcagttattgag 841 Query: 345 cccccagctccttcaatcaccggtaccagtgagagaaaatcatatggcttcaatccagat 404 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct: 840 cccccagctccttcaatcaccggtaccagcgagagaaaatcgtatggcttcaatccagat 781 Query: 405 tccacaacaagatccacaaaaccagaagccaggagggcataagcataacaatcacagcca 464 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 780 tcaacaacaagatccacaaaaccagaagccaggagagcataagcataacaatcacagcca 721 Query: 465 tacaatgggactttcaccttgtctcgtacacgaatgaatgcatcttcagcatctccctca 524 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 720 tacaatgggactttcaccttgtctcgtacacgaatgaatgcatcttcagcatctccttca 661 Query: 525 aagagatgtggactcgtcgtatatctacaagtaagcttgcgacagcacattgcaaggacg 584 ||||||||||||||||| |||||| |||||||||||| ||| |||||||||||||| Sbjct: 660 aagagatgtggactcgtagtatat----aagtaagcttgctccagtacattgcaaggacg 605 Query: 585 gacagatatttcttgtccatttaaggtagttttcttcccatccaccccaacccatctctc 644 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 604 gacagatatttcttgtccatttaaggtagttttcttcccgtccaccccaacccatctctc 545 Query: 645 tctcaagattggctgatcaataatgcccataacc 678 |||||||||||||||||||||||||||||||||| Sbjct: 544 tctcaagattggctgatcaataatgcccataacc 511
>ref|XM_476964.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1503 Score = 396 bits (200), Expect = e-107 Identities = 375/433 (86%), Gaps = 4/433 (0%) Strand = Plus / Minus Query: 246 acacgggaatctccggctgccaccacgttgaaacttgttggccgagattccgaagagaca 305 ||||||| ||||| | ||||||||| ||||||||| ||||| ||||||| ||||||| Sbjct: 1321 acacgggcgtctccagatgccaccacattgaaactttcaggccgtgattccgcagagaca 1262 Query: 306 ggccagtggagcttgttcccttcccagtcagttattgagcccccagctccttcaatcacc 365 ||||| ||||||||||| |||| ||| || |||||||| || |||||||||||||| || Sbjct: 1261 ggccaatggagcttgtttcctttccaatctgttattgaacctccagctccttcaatgact 1202 Query: 366 ggtaccagtgagagaaaatcatatggcttcaatccagattccacaacaagatccacaaaa 425 ||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| |||||| Sbjct: 1201 ggtaccaatgagagaaaatcatatggcttcaatcctgattcaacaacaagatctacaaaa 1142 Query: 426 ccagaagccaggagggcataagcataacaatcacagccatacaatgggactttcaccttg 485 ||||| || || || ||||| ||||| ||||| || ||||||| ||||||||| ||||| Sbjct: 1141 ccagaggcaagaagagcataggcatagcaatcgcaaccatacagtgggactttgacctta 1082 Query: 486 tctcgtacacgaatgaatgcatcttcagcatctccctcaaagagatgtggactcgtcgta 545 || ||||||||||| |||||||||||||| ||||| |||| | ||||||||| || ||| Sbjct: 1081 tcccgtacacgaataaatgcatcttcagcttctcctgcaaacaaatgtggacttgttgta 1022 Query: 546 tatctacaagtaagcttgcgacagcacattgcaaggacggacagatatttcttgtccatt 605 ||| ||||||||||| | ||| ||||||||||| || |||||||||||||||||||| Sbjct: 1021 tat----aagtaagcttgtgccaggacattgcaagggcgaacagatatttcttgtccatt 966 Query: 606 taaggtagttttcttcccatccaccccaacccatctctctctcaagattggctgatcaat 665 |||||| |||||| ||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct: 965 taaggttgttttcatcccatcaaccccaacccatctttctctcaagattggctgatcaat 906 Query: 666 aatgcccataacc 678 ||||| |||||| Sbjct: 905 gatgccaataacc 893
>ref|XM_506210.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0003E08.17 mRNA Length = 1509 Score = 396 bits (200), Expect = e-107 Identities = 375/433 (86%), Gaps = 4/433 (0%) Strand = Plus / Minus Query: 246 acacgggaatctccggctgccaccacgttgaaacttgttggccgagattccgaagagaca 305 ||||||| ||||| | ||||||||| ||||||||| ||||| ||||||| ||||||| Sbjct: 1327 acacgggcgtctccagatgccaccacattgaaactttcaggccgtgattccgcagagaca 1268 Query: 306 ggccagtggagcttgttcccttcccagtcagttattgagcccccagctccttcaatcacc 365 ||||| ||||||||||| |||| ||| || |||||||| || |||||||||||||| || Sbjct: 1267 ggccaatggagcttgtttcctttccaatctgttattgaacctccagctccttcaatgact 1208 Query: 366 ggtaccagtgagagaaaatcatatggcttcaatccagattccacaacaagatccacaaaa 425 ||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| |||||| Sbjct: 1207 ggtaccaatgagagaaaatcatatggcttcaatcctgattcaacaacaagatctacaaaa 1148 Query: 426 ccagaagccaggagggcataagcataacaatcacagccatacaatgggactttcaccttg 485 ||||| || || || ||||| ||||| ||||| || ||||||| ||||||||| ||||| Sbjct: 1147 ccagaggcaagaagagcataggcatagcaatcgcaaccatacagtgggactttgacctta 1088 Query: 486 tctcgtacacgaatgaatgcatcttcagcatctccctcaaagagatgtggactcgtcgta 545 || ||||||||||| |||||||||||||| ||||| |||| | ||||||||| || ||| Sbjct: 1087 tcccgtacacgaataaatgcatcttcagcttctcctgcaaacaaatgtggacttgttgta 1028 Query: 546 tatctacaagtaagcttgcgacagcacattgcaaggacggacagatatttcttgtccatt 605 ||| ||||||||||| | ||| ||||||||||| || |||||||||||||||||||| Sbjct: 1027 tat----aagtaagcttgtgccaggacattgcaagggcgaacagatatttcttgtccatt 972 Query: 606 taaggtagttttcttcccatccaccccaacccatctctctctcaagattggctgatcaat 665 |||||| |||||| ||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct: 971 taaggttgttttcatcccatcaaccccaacccatctttctctcaagattggctgatcaat 912 Query: 666 aatgcccataacc 678 ||||| |||||| Sbjct: 911 gatgccaataacc 899
>dbj|AK071379.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023095D21, full insert sequence Length = 1509 Score = 396 bits (200), Expect = e-107 Identities = 375/433 (86%), Gaps = 4/433 (0%) Strand = Plus / Minus Query: 246 acacgggaatctccggctgccaccacgttgaaacttgttggccgagattccgaagagaca 305 ||||||| ||||| | ||||||||| ||||||||| ||||| ||||||| ||||||| Sbjct: 1327 acacgggcgtctccagatgccaccacattgaaactttcaggccgtgattccgcagagaca 1268 Query: 306 ggccagtggagcttgttcccttcccagtcagttattgagcccccagctccttcaatcacc 365 ||||| ||||||||||| |||| ||| || |||||||| || |||||||||||||| || Sbjct: 1267 ggccaatggagcttgtttcctttccaatctgttattgaacctccagctccttcaatgact 1208 Query: 366 ggtaccagtgagagaaaatcatatggcttcaatccagattccacaacaagatccacaaaa 425 ||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| |||||| Sbjct: 1207 ggtaccaatgagagaaaatcatatggcttcaatcctgattcaacaacaagatctacaaaa 1148 Query: 426 ccagaagccaggagggcataagcataacaatcacagccatacaatgggactttcaccttg 485 ||||| || || || ||||| ||||| ||||| || ||||||| ||||||||| ||||| Sbjct: 1147 ccagaggcaagaagagcataggcatagcaatcgcaaccatacagtgggactttgacctta 1088 Query: 486 tctcgtacacgaatgaatgcatcttcagcatctccctcaaagagatgtggactcgtcgta 545 || ||||||||||| |||||||||||||| ||||| |||| | ||||||||| || ||| Sbjct: 1087 tcccgtacacgaataaatgcatcttcagcttctcctgcaaacaaatgtggacttgttgta 1028 Query: 546 tatctacaagtaagcttgcgacagcacattgcaaggacggacagatatttcttgtccatt 605 ||| ||||||||||| | ||| ||||||||||| || |||||||||||||||||||| Sbjct: 1027 tat----aagtaagcttgtgccaggacattgcaagggcgaacagatatttcttgtccatt 972 Query: 606 taaggtagttttcttcccatccaccccaacccatctctctctcaagattggctgatcaat 665 |||||| |||||| ||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct: 971 taaggttgttttcatcccatcaaccccaacccatctttctctcaagattggctgatcaat 912 Query: 666 aatgcccataacc 678 ||||| |||||| Sbjct: 911 gatgccaataacc 899
>dbj|AK103440.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033129C22, full insert sequence Length = 1503 Score = 389 bits (196), Expect = e-105 Identities = 374/433 (86%), Gaps = 4/433 (0%) Strand = Plus / Minus Query: 246 acacgggaatctccggctgccaccacgttgaaacttgttggccgagattccgaagagaca 305 ||||||| ||||| | ||||||||| ||||||||| ||||| ||||||| ||||||| Sbjct: 1321 acacgggcgtctccagatgccaccacattgaaactttcaggccgtgattccgcagagaca 1262 Query: 306 ggccagtggagcttgttcccttcccagtcagttattgagcccccagctccttcaatcacc 365 ||||| ||||||||||| |||| ||| || |||||||| || |||||||||||||| || Sbjct: 1261 ggccaatggagcttgtttcctttccaatctgttattgaacctccagctccttcaatgact 1202 Query: 366 ggtaccagtgagagaaaatcatatggcttcaatccagattccacaacaagatccacaaaa 425 ||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| |||||| Sbjct: 1201 ggtaccaatgagagaaaatcatatggcttcaatcctgattcaacaacaagatctacaaaa 1142 Query: 426 ccagaagccaggagggcataagcataacaatcacagccatacaatgggactttcaccttg 485 ||||| || || || ||||| ||||| ||||| || ||||||| ||||||||| ||||| Sbjct: 1141 ccagaggcaagaagagcataggcatagcaatcgcaaccatacagtgggactttgacctta 1082 Query: 486 tctcgtacacgaatgaatgcatcttcagcatctccctcaaagagatgtggactcgtcgta 545 || ||||||||||| |||||||||||||| ||||| |||| | ||||||||| || ||| Sbjct: 1081 tcccgtacacgaataaatgcatcttcagcttctcctgcaaacaaatgtggacttgttgta 1022 Query: 546 tatctacaagtaagcttgcgacagcacattgcaaggacggacagatatttcttgtccatt 605 ||| ||||||||||| | ||| | ||||||||| || |||||||||||||||||||| Sbjct: 1021 tat----aagtaagcttgtgccaggatattgcaagggcgaacagatatttcttgtccatt 966 Query: 606 taaggtagttttcttcccatccaccccaacccatctctctctcaagattggctgatcaat 665 |||||| |||||| ||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct: 965 taaggttgttttcatcccatcaaccccaacccatctttctctcaagattggctgatcaat 906 Query: 666 aatgcccataacc 678 ||||| |||||| Sbjct: 905 gatgccaataacc 893
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 168 bits (85), Expect = 2e-38 Identities = 118/129 (91%) Strand = Plus / Minus Query: 550 tacaagtaagcttgcgacagcacattgcaaggacggacagatatttcttgtccatttaag 609 |||||||||||||| | ||| ||||||||||| || |||||||||||||||||||||||| Sbjct: 4924343 tacaagtaagcttgtgccaggacattgcaagggcgaacagatatttcttgtccatttaag 4924284 Query: 610 gtagttttcttcccatccaccccaacccatctctctctcaagattggctgatcaataatg 669 || |||||| ||||||| |||||||||||||| ||||||||||||||||||||||| ||| Sbjct: 4924283 gttgttttcatcccatcaaccccaacccatctttctctcaagattggctgatcaatgatg 4924224 Query: 670 cccataacc 678 || |||||| Sbjct: 4924223 ccaataacc 4924215 Score = 121 bits (61), Expect = 3e-24 Identities = 97/109 (88%) Strand = Plus / Minus Query: 285 ggccgagattccgaagagacaggccagtggagcttgttcccttcccagtcagttattgag 344 ||||| ||||||| |||||||||||| ||||||||||| |||| ||| || |||||||| Sbjct: 4925387 ggccgtgattccgcagagacaggccaatggagcttgtttcctttccaatctgttattgaa 4925328 Query: 345 cccccagctccttcaatcaccggtaccagtgagagaaaatcatatggct 393 || |||||||||||||| || ||||||| |||||||||||||||||||| Sbjct: 4925327 cctccagctccttcaatgactggtaccaatgagagaaaatcatatggct 4925279 Score = 79.8 bits (40), Expect = 1e-11 Identities = 79/92 (85%) Strand = Plus / Minus Query: 392 cttcaatccagattccacaacaagatccacaaaaccagaagccaggagggcataagcata 451 ||||||||| ||||| ||||||||||| ||||||||||| || || || ||||| ||||| Sbjct: 4924960 cttcaatcctgattcaacaacaagatctacaaaaccagaggcaagaagagcataggcata 4924901 Query: 452 acaatcacagccatacaatgggactttcacct 483 ||||| || ||||||| ||||||||| |||| Sbjct: 4924900 gcaatcgcaaccatacagtgggactttgacct 4924869 Score = 61.9 bits (31), Expect = 3e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 480 accttgtctcgtacacgaatgaatgcatcttcagcatctccctcaaagagatgtggactc 539 ||||| || ||||||||||| |||||||||||||| ||||| |||| | ||||||||| Sbjct: 4924771 accttatcccgtacacgaataaatgcatcttcagcttctcctgcaaacaaatgtggactt 4924712 Query: 540 gtcgtatatct 550 || |||||||| Sbjct: 4924711 gttgtatatct 4924701
>dbj|AP005173.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0003E08 Length = 161095 Score = 168 bits (85), Expect = 2e-38 Identities = 118/129 (91%) Strand = Plus / Minus Query: 550 tacaagtaagcttgcgacagcacattgcaaggacggacagatatttcttgtccatttaag 609 |||||||||||||| | ||| ||||||||||| || |||||||||||||||||||||||| Sbjct: 109827 tacaagtaagcttgtgccaggacattgcaagggcgaacagatatttcttgtccatttaag 109768 Query: 610 gtagttttcttcccatccaccccaacccatctctctctcaagattggctgatcaataatg 669 || |||||| ||||||| |||||||||||||| ||||||||||||||||||||||| ||| Sbjct: 109767 gttgttttcatcccatcaaccccaacccatctttctctcaagattggctgatcaatgatg 109708 Query: 670 cccataacc 678 || |||||| Sbjct: 109707 ccaataacc 109699 Score = 121 bits (61), Expect = 3e-24 Identities = 97/109 (88%) Strand = Plus / Minus Query: 285 ggccgagattccgaagagacaggccagtggagcttgttcccttcccagtcagttattgag 344 ||||| ||||||| |||||||||||| ||||||||||| |||| ||| || |||||||| Sbjct: 110871 ggccgtgattccgcagagacaggccaatggagcttgtttcctttccaatctgttattgaa 110812 Query: 345 cccccagctccttcaatcaccggtaccagtgagagaaaatcatatggct 393 || |||||||||||||| || ||||||| |||||||||||||||||||| Sbjct: 110811 cctccagctccttcaatgactggtaccaatgagagaaaatcatatggct 110763 Score = 79.8 bits (40), Expect = 1e-11 Identities = 79/92 (85%) Strand = Plus / Minus Query: 392 cttcaatccagattccacaacaagatccacaaaaccagaagccaggagggcataagcata 451 ||||||||| ||||| ||||||||||| ||||||||||| || || || ||||| ||||| Sbjct: 110444 cttcaatcctgattcaacaacaagatctacaaaaccagaggcaagaagagcataggcata 110385 Query: 452 acaatcacagccatacaatgggactttcacct 483 ||||| || ||||||| ||||||||| |||| Sbjct: 110384 gcaatcgcaaccatacagtgggactttgacct 110353 Score = 61.9 bits (31), Expect = 3e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 480 accttgtctcgtacacgaatgaatgcatcttcagcatctccctcaaagagatgtggactc 539 ||||| || ||||||||||| |||||||||||||| ||||| |||| | ||||||||| Sbjct: 110255 accttatcccgtacacgaataaatgcatcttcagcttctcctgcaaacaaatgtggactt 110196 Query: 540 gtcgtatatct 550 || |||||||| Sbjct: 110195 gttgtatatct 110185
>ref|NM_120072.2| Arabidopsis thaliana 3'(2'),5'-bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase AT4G39120 mRNA, complete cds Length = 1047 Score = 105 bits (53), Expect = 2e-19 Identities = 95/109 (87%) Strand = Plus / Minus Query: 381 aaatcatatggcttcaatccagattccacaacaagatccacaaaaccagaagccaggagg 440 |||||||||||||| | || ||||| | ||||||||| ||||| |||||||||||||| Sbjct: 875 aaatcatatggctttagaccggattcaataacaagatcgacaaatccagaagccaggaga 816 Query: 441 gcataagcataacaatcacagccatacaatgggactttcaccttgtctc 489 || |||||||||||||||||||| || || || |||||||||||||||| Sbjct: 815 gcgtaagcataacaatcacagccgtataagggcactttcaccttgtctc 767
>gb|BT010891.1| Arabidopsis thaliana At4g39120 gene, complete cds Length = 1041 Score = 105 bits (53), Expect = 2e-19 Identities = 95/109 (87%) Strand = Plus / Minus Query: 381 aaatcatatggcttcaatccagattccacaacaagatccacaaaaccagaagccaggagg 440 |||||||||||||| | || ||||| | ||||||||| ||||| |||||||||||||| Sbjct: 869 aaatcatatggctttagaccggattcaataacaagatcgacaaatccagaagccaggaga 810 Query: 441 gcataagcataacaatcacagccatacaatgggactttcaccttgtctc 489 || |||||||||||||||||||| || || || |||||||||||||||| Sbjct: 809 gcgtaagcataacaatcacagccgtataagggcactttcaccttgtctc 761
>dbj|AK220687.1| Arabidopsis thaliana mRNA for Inositol monophosphatase - like protein, complete cds, clone: RAFL21-86-H16 Length = 1380 Score = 105 bits (53), Expect = 2e-19 Identities = 95/109 (87%) Strand = Plus / Minus Query: 381 aaatcatatggcttcaatccagattccacaacaagatccacaaaaccagaagccaggagg 440 |||||||||||||| | || ||||| | ||||||||| ||||| |||||||||||||| Sbjct: 897 aaatcatatggctttagaccggattcaataacaagatcgacaaatccagaagccaggaga 838 Query: 441 gcataagcataacaatcacagccatacaatgggactttcaccttgtctc 489 || |||||||||||||||||||| || || || |||||||||||||||| Sbjct: 837 gcgtaagcataacaatcacagccgtataagggcactttcaccttgtctc 789
>emb|BX842348.1|CNS0A3SI Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH67ZC09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1417 Score = 105 bits (53), Expect = 2e-19 Identities = 95/109 (87%) Strand = Plus / Minus Query: 381 aaatcatatggcttcaatccagattccacaacaagatccacaaaaccagaagccaggagg 440 |||||||||||||| | || ||||| | ||||||||| ||||| |||||||||||||| Sbjct: 874 aaatcatatggctttagaccggattcaataacaagatcgacaaatccagaagccaggaga 815 Query: 441 gcataagcataacaatcacagccatacaatgggactttcaccttgtctc 489 || |||||||||||||||||||| || || || |||||||||||||||| Sbjct: 814 gcgtaagcataacaatcacagccgtataagggcactttcaccttgtctc 766
>dbj|AK176630.1| Arabidopsis thaliana mRNA for Inositol monophosphatase - like protein, partial cds, clone: RAFL25-16-P15 Length = 1543 Score = 105 bits (53), Expect = 2e-19 Identities = 95/109 (87%) Strand = Plus / Minus Query: 381 aaatcatatggcttcaatccagattccacaacaagatccacaaaaccagaagccaggagg 440 |||||||||||||| | || ||||| | ||||||||| ||||| |||||||||||||| Sbjct: 833 aaatcatatggctttagaccggattcaataacaagatcgacaaatccagaagccaggaga 774 Query: 441 gcataagcataacaatcacagccatacaatgggactttcaccttgtctc 489 || |||||||||||||||||||| || || || |||||||||||||||| Sbjct: 773 gcgtaagcataacaatcacagccgtataagggcactttcaccttgtctc 725
>dbj|AK175533.1| Arabidopsis thaliana mRNA for inositol monophosphatase - like protein, complete cds, clone: RAFL21-95-B18 Length = 1380 Score = 105 bits (53), Expect = 2e-19 Identities = 95/109 (87%) Strand = Plus / Minus Query: 381 aaatcatatggcttcaatccagattccacaacaagatccacaaaaccagaagccaggagg 440 |||||||||||||| | || ||||| | ||||||||| ||||| |||||||||||||| Sbjct: 897 aaatcatatggctttagaccggattcaataacaagatcgacaaatccagaagccaggaga 838 Query: 441 gcataagcataacaatcacagccatacaatgggactttcaccttgtctc 489 || |||||||||||||||||||| || || || |||||||||||||||| Sbjct: 837 gcgtaagcataacaatcacagccgtataagggcactttcaccttgtctc 789
>dbj|AK118971.1| Arabidopsis thaliana At4g39120 mRNA for putative Inositol monophosphatase, complete cds, clone: RAFL21-30-L04 Length = 1541 Score = 105 bits (53), Expect = 2e-19 Identities = 95/109 (87%) Strand = Plus / Minus Query: 381 aaatcatatggcttcaatccagattccacaacaagatccacaaaaccagaagccaggagg 440 |||||||||||||| | || ||||| | ||||||||| ||||| |||||||||||||| Sbjct: 833 aaatcatatggctttagaccggattcaataacaagatcgacaaatccagaagccaggaga 774 Query: 441 gcataagcataacaatcacagccatacaatgggactttcaccttgtctc 489 || |||||||||||||||||||| || || || |||||||||||||||| Sbjct: 773 gcgtaagcataacaatcacagccgtataagggcactttcaccttgtctc 725
>emb|BX841512.1|CNS09YHJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB14ZE08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1084 Score = 97.6 bits (49), Expect = 5e-17 Identities = 94/109 (86%) Strand = Plus / Minus Query: 381 aaatcatatggcttcaatccagattccacaacaagatccacaaaaccagaagccaggagg 440 |||||||||||||| | || ||||| | ||||||||| ||||| |||||||||||||| Sbjct: 912 aaatcatatggctttagaccggattcaataacaagatcgacaaatccagaagccaggaga 853 Query: 441 gcataagcataacaatcacagccatacaatgggactttcaccttgtctc 489 || |||||||||||||||||||| || || || |||||||| ||||||| Sbjct: 852 gcgtaagcataacaatcacagccgtataagggcactttcacattgtctc 804
>emb|AL161594.2|ATCHRIV90 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 90 Length = 198987 Score = 83.8 bits (42), Expect = 7e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 410 aacaagatccacaaaaccagaagccaggagggcataagcataacaatcacagccatacaa 469 ||||||||| ||||| |||||||||||||| || |||||||||||||||||||| || || Sbjct: 140183 aacaagatcgacaaatccagaagccaggagagcgtaagcataacaatcacagccgtataa 140242 Query: 470 tgggactttcacct 483 || |||||||||| Sbjct: 140243 gggcactttcacct 140256
>emb|AL050351.1|ATT22F8 Arabidopsis thaliana DNA chromosome 4, BAC clone T22F8 (ESSA project) Length = 89035 Score = 83.8 bits (42), Expect = 7e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 410 aacaagatccacaaaaccagaagccaggagggcataagcataacaatcacagccatacaa 469 ||||||||| ||||| |||||||||||||| || |||||||||||||||||||| || || Sbjct: 8719 aacaagatcgacaaatccagaagccaggagagcgtaagcataacaatcacagccgtataa 8778 Query: 470 tgggactttcacct 483 || |||||||||| Sbjct: 8779 gggcactttcacct 8792
>gb|AC140722.11| Medicago truncatula clone mth2-14e20, complete sequence Length = 97982 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 411 acaagatccacaaaaccagaagccaggagggcataagcataacaatcacagccatacaat 470 |||||||||||||||||||||| || ||| ||||| ||||| |||||||| ||||| ||| Sbjct: 83977 acaagatccacaaaaccagaagacaagagagcatatgcatagcaatcacaaccatataat 83918 Query: 471 gg 472 || Sbjct: 83917 gg 83916
>gb|AC091172.11| Homo sapiens chromosome 17, clone RP11-156E6, complete sequence Length = 178345 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 176 tttaaatgaacaggagccaccc 197 |||||||||||||||||||||| Sbjct: 45199 tttaaatgaacaggagccaccc 45220
>gb|AC106606.5| Rattus norvegicus 1 BAC CH230-148J18 (Children's Hospital Oakland Research Institute) complete sequence Length = 227298 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 621 cccatccaccccaacccatct 641 ||||||||||||||||||||| Sbjct: 149704 cccatccaccccaacccatct 149724
>gb|AC154588.2| Mus musculus BAC clone RP23-363L9 from chromosome 16, complete sequence Length = 200787 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 594 ttcttgtccatttaaggtagt 614 ||||||||||||||||||||| Sbjct: 140976 ttcttgtccatttaaggtagt 140996
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 620 tcccatccaccccaacccatc 640 ||||||||||||||||||||| Sbjct: 5766890 tcccatccaccccaacccatc 5766910
>emb|AL731620.2|OSJN00270 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0003A12, complete sequence Length = 164425 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 620 tcccatccaccccaacccatc 640 ||||||||||||||||||||| Sbjct: 61876 tcccatccaccccaacccatc 61896
>emb|AL731580.3|OSJN00227 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0001M07, complete sequence Length = 114335 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 620 tcccatccaccccaacccatc 640 ||||||||||||||||||||| Sbjct: 110695 tcccatccaccccaacccatc 110715
>gb|AY590312.1| Larus bulleri isolate JAM255 control region, partial sequence; mitochondrial Length = 165 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 629 ccccaacccatctctctctc 648 |||||||||||||||||||| Sbjct: 5 ccccaacccatctctctctc 24
>gb|AY590311.1| Larus bulleri isolate MKP431 control region, partial sequence; mitochondrial Length = 165 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 629 ccccaacccatctctctctc 648 |||||||||||||||||||| Sbjct: 5 ccccaacccatctctctctc 24
>gb|AY590308.1| Larus bulleri isolate MKP429 control region, partial sequence; mitochondrial Length = 165 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 629 ccccaacccatctctctctc 648 |||||||||||||||||||| Sbjct: 5 ccccaacccatctctctctc 24
>gb|AC124106.10| Mus musculus chromosome 5, clone RP24-299A7, complete sequence Length = 167372 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 628 accccaacccatctctctct 647 |||||||||||||||||||| Sbjct: 111157 accccaacccatctctctct 111138
>gb|AY338373.1| Hordeum chilense clone 9 cultivar H7 gamma 3 hordein mRNA, partial cds Length = 838 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 ttccacaacaagatccacaa 423 |||||||||||||||||||| Sbjct: 214 ttccacaacaagatccacaa 233
>gb|AY338372.1| Hordeum chilense clone 8 cultivar H7 gamma 3 hordein mRNA, partial cds Length = 722 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 ttccacaacaagatccacaa 423 |||||||||||||||||||| Sbjct: 98 ttccacaacaagatccacaa 117
>gb|AY338371.1| Hordeum chilense clone 7 cultivar H7 gamma 3 hordein mRNA, partial cds Length = 838 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 ttccacaacaagatccacaa 423 |||||||||||||||||||| Sbjct: 214 ttccacaacaagatccacaa 233
>gb|AY338370.1| Hordeum chilense clone 6 cultivar H1 gamma 3 hordein mRNA, complete cds Length = 1030 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 ttccacaacaagatccacaa 423 |||||||||||||||||||| Sbjct: 215 ttccacaacaagatccacaa 234
>gb|AY338369.1| Hordeum chilense clone 5 cultivar H1 gamma 3 hordein mRNA, complete cds Length = 1029 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 ttccacaacaagatccacaa 423 |||||||||||||||||||| Sbjct: 215 ttccacaacaagatccacaa 234
>gb|AY338368.1| Hordeum chilense clone 4 cultivar H1 gamma 3 hordein mRNA, complete cds Length = 1028 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 ttccacaacaagatccacaa 423 |||||||||||||||||||| Sbjct: 215 ttccacaacaagatccacaa 234
>gb|AY338367.1| Hordeum chilense clone 3 cultivar H1 gamma 3 hordein mRNA, complete cds Length = 1030 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 ttccacaacaagatccacaa 423 |||||||||||||||||||| Sbjct: 215 ttccacaacaagatccacaa 234
>gb|AY338366.1| Hordeum chilense clone 2 cultivar H1 gamma 3 hordein mRNA, complete cds Length = 1030 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 ttccacaacaagatccacaa 423 |||||||||||||||||||| Sbjct: 215 ttccacaacaagatccacaa 234
>gb|AY338365.1| Hordeum chilense clone 1 cultivar H1 gamma 3 hordein mRNA, complete cds Length = 1024 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 ttccacaacaagatccacaa 423 |||||||||||||||||||| Sbjct: 215 ttccacaacaagatccacaa 234
>gb|AC161049.2| Mus musculus BAC clone RP24-94D6 from chromosome 12, complete sequence Length = 193424 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 649 aagattggctgatcaataat 668 |||||||||||||||||||| Sbjct: 143068 aagattggctgatcaataat 143087
>emb|AL390785.15| Human DNA sequence from clone RP11-325N9 on chromosome 10, complete sequence Length = 203169 Score = 40.1 bits (20), Expect = 9.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 411 acaagatccacaaaaccagaagccagga 438 ||||||||| ||||||||||||||||| Sbjct: 102728 acaagatcccaaaaaccagaagccagga 102755
>emb|AL627215.12| Mouse DNA sequence from clone RP23-292E3 on chromosome 11, complete sequence Length = 216106 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 647 tcaagattggctgatcaata 666 |||||||||||||||||||| Sbjct: 191350 tcaagattggctgatcaata 191331
>gb|AC074140.5| Homo sapiens chromosome 19 clone LLNLF-18A12, complete sequence Length = 37049 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 aacaagatccacaaaaccag 429 |||||||||||||||||||| Sbjct: 17682 aacaagatccacaaaaccag 17701
>gb|AC093914.3| Homo sapiens BAC clone RP11-779N9 from 4, complete sequence Length = 170536 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 tattggatagatgaataaca 165 |||||||||||||||||||| Sbjct: 76490 tattggatagatgaataaca 76471
>ref|XM_687821.1| PREDICTED: Danio rerio hypothetical protein LOC564488 (LOC564488), mRNA Length = 820 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 ccaccacgttgaaacttgtt 284 |||||||||||||||||||| Sbjct: 129 ccaccacgttgaaacttgtt 110
>gb|AC123753.7| Mus musculus chromosome 5, clone RP24-200E3, complete sequence Length = 167457 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 628 accccaacccatctctctct 647 |||||||||||||||||||| Sbjct: 111241 accccaacccatctctctct 111222
>gb|AC009996.7|AC009996 Homo sapiens chromosome 15 clone RP11-151N17 map 15q15, complete sequence Length = 162495 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 gagagaaaatcatatggctt 394 |||||||||||||||||||| Sbjct: 4883 gagagaaaatcatatggctt 4902
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 agtgagagaaaatcatatgg 391 |||||||||||||||||||| Sbjct: 12333348 agtgagagaaaatcatatgg 12333367
>gb|AC154463.2| Mus musculus BAC clone RP24-144A20 from chromosome 9, complete sequence Length = 147232 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 588 agatatttcttgtccattta 607 |||||||||||||||||||| Sbjct: 52437 agatatttcttgtccattta 52456
>dbj|AP003511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0578B12 Length = 151192 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 agtgagagaaaatcatatgg 391 |||||||||||||||||||| Sbjct: 49808 agtgagagaaaatcatatgg 49827
>dbj|AK173460.1| Ciona intestinalis cDNA, clone:cieg014e18, full insert sequence Length = 2169 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 477 ttcaccttgtctcgtacacgaatg 500 ||||||||||||||| |||||||| Sbjct: 407 ttcaccttgtctcgttcacgaatg 384
>emb|BX784029.5| Zebrafish DNA sequence from clone DKEY-21H14 in linkage group 4, complete sequence Length = 219903 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 ccaccacgttgaaacttgtt 284 |||||||||||||||||||| Sbjct: 32875 ccaccacgttgaaacttgtt 32856 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,086,291 Number of Sequences: 3902068 Number of extensions: 6086291 Number of successful extensions: 110832 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 110676 Number of HSP's gapped (non-prelim): 151 length of query: 678 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 655 effective length of database: 17,143,297,704 effective search space: 11228859996120 effective search space used: 11228859996120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)