ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9h14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101024.1| Oryza sativa (japonica cultivar-group) cDNA clon... 349 7e-93
2dbj|AK058254.1| Oryza sativa (japonica cultivar-group) cDNA clon... 349 7e-93
3gb|AY105653.1| Zea mays PCO079171 mRNA sequence 343 4e-91
4dbj|AK070828.1| Oryza sativa (japonica cultivar-group) cDNA clon... 341 2e-90
5ref|NM_197228.1| Oryza sativa (japonica cultivar-group) putative... 135 2e-28
6gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome... 115 2e-22
7gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 geno... 115 2e-22
8dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 115 2e-22
9gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 115 2e-22
10gb|U01162.1|U01162 Amaranthus hypochondriacus C4 photosynthetic ... 56 1e-04
11emb|Z23002.1|MIST59KD S.tuberosum mitochondrial gene for the 59k... 50 0.009
12gb|AY107471.1| Zea mays PCO115183 mRNA sequence 50 0.009
13emb|AJ404642.1|CAR404642 Cicer arietinum partial ORF for NAD-dep... 46 0.13
14gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
15gb|AC136447.4| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
16gb|BC029294.1| Homo sapiens ELL associated factor 1, mRNA (cDNA ... 42 2.1
17ref|XM_965514.1| PREDICTED: Tribolium castaneum similar to CG131... 42 2.1
18emb|Z23023.1|STMALDEHB S.tuberosum mRNA for precursor of the mit... 42 2.1
19gb|AC008916.7| Homo sapiens chromosome 5 clone CTD-2271P9, compl... 42 2.1
20gb|AC148817.3| Medicago truncatula chromosome 7 BAC clone mth2-2... 42 2.1
21dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
22dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
23gb|AC090883.1|AC090883 Homo sapiens chromosome 3 clone RP11-117G... 42 2.1
24gb|AC027125.5| Homo sapiens chromosome 3 clone RP11-584M7 map 3p... 42 2.1
25gb|AC008959.4|AC008959 Homo sapiens chromosome 5 clone CTD-2354D... 42 2.1
26dbj|AP000364.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
27dbj|AK068577.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
28gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
29tpd|BR000069.1| TPA: TPA_exp: Ciona intestinalis Ci-ZF(C2H2)-66 ... 42 2.1
30gb|AC115065.11| Mus musculus chromosome 3, clone RP24-401H12, co... 40 8.3
31ref|XM_454101.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E03377g ... 40 8.3
32gb|AC131110.3| Mus musculus BAC clone RP23-387J23 from chromosom... 40 8.3
33emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 8.3
34gb|AC153634.3| Mus musculus 6 BAC RP23-368O2 (Roswell Park Cance... 40 8.3
35gb|AF353511.1|AF353511 Porcine epidemic diarrhea virus strain CV... 40 8.3
36gb|BC113247.1| Bos taurus cDNA clone IMAGE:8083724 40 8.3
37gb|AC149333.2| Phakopsora pachyrhizi clone JGIAFNA-25D11, comple... 40 8.3 
>dbj|AK101024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150D19, full
            insert sequence
          Length = 2454

 Score =  349 bits (176), Expect = 7e-93
 Identities = 314/360 (87%)
 Strand = Plus / Minus

                                                                        
Query: 252  ttcacaagtgggctgtaaacagggtaccacatcttccgagccacgtaatccaccgtatcc 311
            ||||| || |||||||||| ||||||||||||||||||||||||  | || || || |||
Sbjct: 2120 ttcacgagggggctgtaaatagggtaccacatcttccgagccacaaagtcgactgtgtcc 2061

                                                                        
Query: 312  gactctgacatgctcctgaggtcccgaggatccatgtcagagcatccctcggccaaatct 371
            | ||| | ||||||| ||||||||| ||  || |  ||| | |  |||||||||| ||||
Sbjct: 2060 gcctcagtcatgctcttgaggtccctagcgtctacatcacaacgcccctcggccagatct 2001

                                                                        
Query: 372  tcatcaacagcagcacgggcgactgcagcgccgacacgtgcggtgatgtgcctgatactt 431
            ||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2000 tcatcaacagcggcacggacgactgcggcgccgacacgtgcggtgatgtgcctgatactt 1941

                                                                        
Query: 432  gaaattgaaggaaagaggattccttttcgaattgcatcatctgtgatgtatgaagcaagg 491
            || ||||| ||||||||||| |||||||||||| |||| |||||||||||||| ||||||
Sbjct: 1940 gagattgatggaaagaggatgccttttcgaatttcatcgtctgtgatgtatgacgcaagg 1881

                                                                        
Query: 492  cactcagctgcagcatgtagcatgccatccgatatatgccgagcacctgaaagaagggct 551
            ||||||||||| |  || ||||||||||| |  |||||||||||||||||||||||||||
Sbjct: 1880 cactcagctgctgattggagcatgccatctgtaatatgccgagcacctgaaagaagggct 1821

                                                                        
Query: 552  cctaaaccaatcccaggaaacagatacatgttgtttgcttgattagcatagccttttcta 611
            |||||||| || ||||||||||||||||| ||||||||||||||||| || |||| ||||
Sbjct: 1820 cctaaaccgataccaggaaacagatacatattgtttgcttgattagcgtacccttgtcta 1761
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>dbj|AK058254.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-C11, full
           insert sequence
          Length = 769

 Score =  349 bits (176), Expect = 7e-93
 Identities = 314/360 (87%)
 Strand = Plus / Minus

                                                                       
Query: 252 ttcacaagtgggctgtaaacagggtaccacatcttccgagccacgtaatccaccgtatcc 311
           ||||| || |||||||||| ||||||||||||||||||||||||  | || || || |||
Sbjct: 485 ttcacgagggggctgtaaatagggtaccacatcttccgagccacaaagtcgactgtgtcc 426

                                                                       
Query: 312 gactctgacatgctcctgaggtcccgaggatccatgtcagagcatccctcggccaaatct 371
           | ||| | ||||||| ||||||||| ||  || |  ||| | |  |||||||||| ||||
Sbjct: 425 gcctcagtcatgctcttgaggtccctagcgtctacatcacaacgcccctcggccagatct 366

                                                                       
Query: 372 tcatcaacagcagcacgggcgactgcagcgccgacacgtgcggtgatgtgcctgatactt 431
           ||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 365 tcatcaacagcggcacggacgactgcggcgccgacacgtgcggtgatgtgcctgatactt 306

                                                                       
Query: 432 gaaattgaaggaaagaggattccttttcgaattgcatcatctgtgatgtatgaagcaagg 491
           || ||||| ||||||||||| |||||||||||| |||| |||||||||||||| ||||||
Sbjct: 305 gagattgatggaaagaggatgccttttcgaatttcatcgtctgtgatgtatgacgcaagg 246

                                                                       
Query: 492 cactcagctgcagcatgtagcatgccatccgatatatgccgagcacctgaaagaagggct 551
           ||||||||||| |  || ||||||||||| |  |||||||||||||||||||||||||||
Sbjct: 245 cactcagctgctgattggagcatgccatctgtaatatgccgagcacctgaaagaagggct 186

                                                                       
Query: 552 cctaaaccaatcccaggaaacagatacatgttgtttgcttgattagcatagccttttcta 611
           |||||||| || ||||||||||||||||| ||||||||||||||||| || |||| ||||
Sbjct: 185 cctaaaccgataccaggaaacagatacatattgtttgcttgattagcgtacccttgtcta 126
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>gb|AY105653.1| Zea mays PCO079171 mRNA sequence
          Length = 862

 Score =  343 bits (173), Expect = 4e-91
 Identities = 305/349 (87%)
 Strand = Plus / Minus

                                                                       
Query: 253 tcacaagtgggctgtaaacagggtaccacatcttccgagccacgtaatccaccgtatccg 312
           ||||||| |||||||||| ||||||||||||||||||||| ||||| ||||| |  ||||
Sbjct: 484 tcacaagagggctgtaaatagggtaccacatcttccgagcgacgtagtccactgcttccg 425

                                                                       
Query: 313 actctgacatgctcctgaggtcccgaggatccatgtcagagcatccctcggccaaatctt 372
           |||||||||| ||||  || |||| |||| |||  ||| |||| ||||| ||||  ||||
Sbjct: 424 actctgacatactcccaagctccctaggacccacatcacagcacccctcagccaggtctt 365

                                                                       
Query: 373 catcaacagcagcacgggcgactgcagcgccgacacgtgcggtgatgtgcctgatacttg 432
           || ||||||| |||||| ||||||| |||||||||||||||||||||||||| ||||| |
Sbjct: 364 cagcaacagcggcacggacgactgctgcgccgacacgtgcggtgatgtgcctaatactgg 305

                                                                       
Query: 433 aaattgaaggaaagaggattccttttcgaattgcatcatctgtgatgtatgaagcaaggc 492
           | |  ||||| ||||||||||||||||||||| | || |||||||||||||| || ||||
Sbjct: 304 agaccgaagggaagaggattccttttcgaatttcgtcgtctgtgatgtatgatgccaggc 245

                                                                       
Query: 493 actcagctgcagcatgtagcatgccatccgatatatgccgagcacctgaaagaagggctc 552
           |||||||||| || || ||||||||||| || | |||||| ||||||||||||||||| |
Sbjct: 244 actcagctgctgcttgaagcatgccatctgaaacatgccgggcacctgaaagaagggcac 185

                                                            
Query: 553 ctaaaccaatcccaggaaacagatacatgttgtttgcttgattagcata 601
           ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 184 ctaaaccaatcccaggaaatagatacatgttgtttgcttgattagcata 136
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>dbj|AK070828.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065M02, full
            insert sequence
          Length = 2357

 Score =  341 bits (172), Expect = 2e-90
 Identities = 313/360 (86%)
 Strand = Plus / Minus

                                                                        
Query: 252  ttcacaagtgggctgtaaacagggtaccacatcttccgagccacgtaatccaccgtatcc 311
            ||||| || |||||||||| ||||||||||||||||||||||||  | || || || |||
Sbjct: 2039 ttcacgagggggctgtaaatagggtaccacatcttccgagccacaaagtcgactgtgtcc 1980

                                                                        
Query: 312  gactctgacatgctcctgaggtcccgaggatccatgtcagagcatccctcggccaaatct 371
            | ||| | ||||||| ||||||||| ||  || |  ||| | |  |||||||||| ||||
Sbjct: 1979 gcctcagtcatgctcttgaggtccctagcgtctacatcacaacgcccctcggccagatct 1920

                                                                        
Query: 372  tcatcaacagcagcacgggcgactgcagcgccgacacgtgcggtgatgtgcctgatactt 431
            ||||||||||| |||||| ||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 1919 tcatcaacagcggcacggacgactgcggcgccgacacgtgcggtgatgtgcccgatactt 1860

                                                                        
Query: 432  gaaattgaaggaaagaggattccttttcgaattgcatcatctgtgatgtatgaagcaagg 491
            || ||||| ||||||||||| |||||||||||| |||| |||||||||||||| ||||||
Sbjct: 1859 gagattgatggaaagaggatgccttttcgaatttcatcgtctgtgatgtatgacgcaagg 1800

                                                                        
Query: 492  cactcagctgcagcatgtagcatgccatccgatatatgccgagcacctgaaagaagggct 551
            ||||||||||| |  || ||||||||||| |  |||||||||||||||||||||||||||
Sbjct: 1799 cactcagctgctgattggagcatgccatctgtaatatgccgagcacctgaaagaagggct 1740

                                                                        
Query: 552  cctaaaccaatcccaggaaacagatacatgttgtttgcttgattagcatagccttttcta 611
            |||||||| || ||||||||||||||||| ||||||||||||||||| || |||| ||||
Sbjct: 1739 cctaaaccgataccaggaaacagatacatattgtttgcttgattagcgtacccttgtcta 1680
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>ref|NM_197228.1| Oryza sativa (japonica cultivar-group) putative mitochondrial
            NAD+-dependent malic enzyme protein (OSJNBb0073N24.24),
            mRNA
          Length = 1766

 Score =  135 bits (68), Expect = 2e-28
 Identities = 107/120 (89%)
 Strand = Plus / Minus

                                                                        
Query: 492  cactcagctgcagcatgtagcatgccatccgatatatgccgagcacctgaaagaagggct 551
            ||||||||||| |  || ||||||||||| |  |||||||||||||||||||||||||||
Sbjct: 1559 cactcagctgctgattggagcatgccatctgtaatatgccgagcacctgaaagaagggct 1500

                                                                        
Query: 552  cctaaaccaatcccaggaaacagatacatgttgtttgcttgattagcatagccttttcta 611
            |||||||| || ||||||||||||||||| ||||||||||||||||| || |||| ||||
Sbjct: 1499 cctaaaccgataccaggaaacagatacatattgtttgcttgattagcgtacccttgtcta 1440
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>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone
            OSJNBa0062C05 map S21174S, complete sequence
          Length = 178867

 Score =  115 bits (58), Expect = 2e-22
 Identities = 70/74 (94%)
 Strand = Plus / Minus

                                                                        
Query: 357  ccctcggccaaatcttcatcaacagcagcacgggcgactgcagcgccgacacgtgcggtg 416
            |||||||||| ||||||||||||||| |||||| ||||||| ||||||||||||||||||
Sbjct: 2131 ccctcggccagatcttcatcaacagcggcacggacgactgcggcgccgacacgtgcggtg 2072

                          
Query: 417  atgtgcctgatact 430
            ||||||||||||||
Sbjct: 2071 atgtgcctgatact 2058



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                        
Query: 429  cttgaaattgaaggaaagaggattccttttcgaattgcatcatctgtgatgtatgaagca 488
            ||||| ||||| ||||||||||| |||||||||||| |||| |||||||||||||| |||
Sbjct: 1952 cttgagattgatggaaagaggatgccttttcgaatttcatcgtctgtgatgtatgacgca 1893

                
Query: 489  aggc 492
            ||||
Sbjct: 1892 aggc 1889



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                        
Query: 492  cactcagctgcagcatgtagcatgccatccgatatatgccgagcacctgaaagaagggct 551
            ||||||||||| |  || ||||||||||| |  |||||||||||||||||||||||||||
Sbjct: 1498 cactcagctgctgattggagcatgccatctgtaatatgccgagcacctgaaagaagggct 1439

                    
Query: 552  cctaaacc 559
            ||||||||
Sbjct: 1438 cctaaacc 1431



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                             
Query: 563  cccaggaaacagatacatgttgtttgcttgattagcatagccttttcta 611
            |||||||||||||||||| ||||||||||||||||| || |||| ||||
Sbjct: 1338 cccaggaaacagatacatattgtttgcttgattagcgtacccttgtcta 1290



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                        
Query: 252  ttcacaagtgggctgtaaacagggtaccacatcttccgagccac 295
            ||||| || |||||||||| ||||||||||||||||||||||||
Sbjct: 2325 ttcacgagggggctgtaaatagggtaccacatcttccgagccac 2282
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>gb|AC078840.6| Oryza sativa chromosome 10 BAC OSJNBb0073N24 genomic sequence, complete
             sequence
          Length = 130058

 Score =  115 bits (58), Expect = 2e-22
 Identities = 70/74 (94%)
 Strand = Plus / Minus

                                                                         
Query: 357   ccctcggccaaatcttcatcaacagcagcacgggcgactgcagcgccgacacgtgcggtg 416
             |||||||||| ||||||||||||||| |||||| ||||||| ||||||||||||||||||
Sbjct: 67989 ccctcggccagatcttcatcaacagcggcacggacgactgcggcgccgacacgtgcggtg 67930

                           
Query: 417   atgtgcctgatact 430
             ||||||||||||||
Sbjct: 67929 atgtgcctgatact 67916



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                         
Query: 429   cttgaaattgaaggaaagaggattccttttcgaattgcatcatctgtgatgtatgaagca 488
             ||||| ||||| ||||||||||| |||||||||||| |||| |||||||||||||| |||
Sbjct: 67810 cttgagattgatggaaagaggatgccttttcgaatttcatcgtctgtgatgtatgacgca 67751

                 
Query: 489   aggc 492
             ||||
Sbjct: 67750 aggc 67747



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                         
Query: 492   cactcagctgcagcatgtagcatgccatccgatatatgccgagcacctgaaagaagggct 551
             ||||||||||| |  || ||||||||||| |  |||||||||||||||||||||||||||
Sbjct: 67356 cactcagctgctgattggagcatgccatctgtaatatgccgagcacctgaaagaagggct 67297

                     
Query: 552   cctaaacc 559
             ||||||||
Sbjct: 67296 cctaaacc 67289



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                              
Query: 563   cccaggaaacagatacatgttgtttgcttgattagcatagccttttcta 611
             |||||||||||||||||| ||||||||||||||||| || |||| ||||
Sbjct: 67196 cccaggaaacagatacatattgtttgcttgattagcgtacccttgtcta 67148



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                         
Query: 252   ttcacaagtgggctgtaaacagggtaccacatcttccgagccac 295
             ||||| || |||||||||| ||||||||||||||||||||||||
Sbjct: 68183 ttcacgagggggctgtaaatagggtaccacatcttccgagccac 68140
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  115 bits (58), Expect = 2e-22
 Identities = 70/74 (94%)
 Strand = Plus / Minus

                                                                            
Query: 357      ccctcggccaaatcttcatcaacagcagcacgggcgactgcagcgccgacacgtgcggtg 416
                |||||||||| ||||||||||||||| |||||| ||||||| ||||||||||||||||||
Sbjct: 18706711 ccctcggccagatcttcatcaacagcggcacggacgactgcggcgccgacacgtgcggtg 18706652

                              
Query: 417      atgtgcctgatact 430
                ||||||||||||||
Sbjct: 18706651 atgtgcctgatact 18706638



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                            
Query: 429      cttgaaattgaaggaaagaggattccttttcgaattgcatcatctgtgatgtatgaagca 488
                ||||| ||||| ||||||||||| |||||||||||| |||| |||||||||||||| |||
Sbjct: 18706532 cttgagattgatggaaagaggatgccttttcgaatttcatcgtctgtgatgtatgacgca 18706473

                    
Query: 489      aggc 492
                ||||
Sbjct: 18706472 aggc 18706469



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                            
Query: 492      cactcagctgcagcatgtagcatgccatccgatatatgccgagcacctgaaagaagggct 551
                ||||||||||| |  || ||||||||||| |  |||||||||||||||||||||||||||
Sbjct: 18706078 cactcagctgctgattggagcatgccatctgtaatatgccgagcacctgaaagaagggct 18706019

                        
Query: 552      cctaaacc 559
                ||||||||
Sbjct: 18706018 cctaaacc 18706011



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                                 
Query: 563      cccaggaaacagatacatgttgtttgcttgattagcatagccttttcta 611
                |||||||||||||||||| ||||||||||||||||| || |||| ||||
Sbjct: 18705918 cccaggaaacagatacatattgtttgcttgattagcgtacccttgtcta 18705870



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                            
Query: 252      ttcacaagtgggctgtaaacagggtaccacatcttccgagccac 295
                ||||| || |||||||||| ||||||||||||||||||||||||
Sbjct: 18706905 ttcacgagggggctgtaaatagggtaccacatcttccgagccac 18706862
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  115 bits (58), Expect = 2e-22
 Identities = 70/74 (94%)
 Strand = Plus / Minus

                                                                            
Query: 357      ccctcggccaaatcttcatcaacagcagcacgggcgactgcagcgccgacacgtgcggtg 416
                |||||||||| ||||||||||||||| |||||| ||||||| ||||||||||||||||||
Sbjct: 18717564 ccctcggccagatcttcatcaacagcggcacggacgactgcggcgccgacacgtgcggtg 18717505

                              
Query: 417      atgtgcctgatact 430
                ||||||||||||||
Sbjct: 18717504 atgtgcctgatact 18717491



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                            
Query: 429      cttgaaattgaaggaaagaggattccttttcgaattgcatcatctgtgatgtatgaagca 488
                ||||| ||||| ||||||||||| |||||||||||| |||| |||||||||||||| |||
Sbjct: 18717385 cttgagattgatggaaagaggatgccttttcgaatttcatcgtctgtgatgtatgacgca 18717326

                    
Query: 489      aggc 492
                ||||
Sbjct: 18717325 aggc 18717322



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                            
Query: 492      cactcagctgcagcatgtagcatgccatccgatatatgccgagcacctgaaagaagggct 551
                ||||||||||| |  || ||||||||||| |  |||||||||||||||||||||||||||
Sbjct: 18716931 cactcagctgctgattggagcatgccatctgtaatatgccgagcacctgaaagaagggct 18716872

                        
Query: 552      cctaaacc 559
                ||||||||
Sbjct: 18716871 cctaaacc 18716864



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                                 
Query: 563      cccaggaaacagatacatgttgtttgcttgattagcatagccttttcta 611
                |||||||||||||||||| ||||||||||||||||| || |||| ||||
Sbjct: 18716771 cccaggaaacagatacatattgtttgcttgattagcgtacccttgtcta 18716723



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                            
Query: 252      ttcacaagtgggctgtaaacagggtaccacatcttccgagccac 295
                ||||| || |||||||||| ||||||||||||||||||||||||
Sbjct: 18717758 ttcacgagggggctgtaaatagggtaccacatcttccgagccac 18717715
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>gb|U01162.1|U01162 Amaranthus hypochondriacus C4 photosynthetic NAD-dependent malic
            enzyme subunit alpha precursor mRNA, complete cds
          Length = 2283

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                        
Query: 537  cctgaaagaagggctcctaaaccaatcccaggaaacagatacatgttgtttgcttgatta 596
            |||||||| ||| | |||| ||||||||||||||| || |||||||||||| | ||||||
Sbjct: 1628 cctgaaaggaggacacctagaccaatcccaggaaaaaggtacatgttgtttccctgatta 1569
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>emb|Z23002.1|MIST59KD S.tuberosum mitochondrial gene for the 59kDa subunit of the
            NAD+-dependent malic enzyme
          Length = 2188

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                        
Query: 531  cgagcacctgaaagaagggctcctaaaccaatcccaggaaacagatacatgttgtttgct 590
            ||||| || |||||||| |||||||  ||||| ||||| || ||||||||||| || |||
Sbjct: 1584 cgagcgccagaaagaagagctcctagcccaatgccagggaagagatacatgttattcgct 1525

                 
Query: 591  tgatt 595
            |||||
Sbjct: 1524 tgatt 1520
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>gb|AY107471.1| Zea mays PCO115183 mRNA sequence
          Length = 1366

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 82/101 (81%)
 Strand = Plus / Minus

                                                                       
Query: 495 tcagctgcagcatgtagcatgccatccgatatatgccgagcacctgaaagaagggctcct 554
           ||||||||||| || ||||| ||||| || |||  ||||||||| || ||||||| ||| 
Sbjct: 752 tcagctgcagcctgcagcattccatcagagataacccgagcaccagacagaagggttcca 693

                                                    
Query: 555 aaaccaatcccaggaaacagatacatgttgtttgcttgatt 595
           |  || || |||||||| || |||||||||||  |||||||
Sbjct: 692 agccctattccaggaaagaggtacatgttgttcccttgatt 652
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>emb|AJ404642.1|CAR404642 Cicer arietinum partial ORF for NAD-dependent malic enzyme (malate
            oxidoreductase), exons 1-4
          Length = 1718

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 95/119 (79%)
 Strand = Plus / Minus

                                                                        
Query: 477  atgtatgaagcaaggcactcagctgcagcatgtagcatgccatccgatatatgccgagca 536
            ||||||||||||||||| ||||| || || || | ||| ||||| |  ||| |  |||||
Sbjct: 1104 atgtatgaagcaaggcattcagcagctgcctgcaacattccatctgtaataagatgagca 1045

                                                                       
Query: 537  cctgaaagaagggctcctaaaccaatcccaggaaacagatacatgttgtttgcttgatt 595
            ||||| ||||| | ||| |||||||| || || || || ||||| || |||||||||||
Sbjct: 1044 cctgacagaagtgttcccaaaccaattcctgggaaaaggtacatattatttgcttgatt 986
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>gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0045P14,
              complete sequence
          Length = 121894

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 41     ctcaacgggtctcaaaactga 61
              |||||||||||||||||||||
Sbjct: 110789 ctcaacgggtctcaaaactga 110809
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>gb|AC136447.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0056F11, complete sequence
          Length = 89986

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 41    ctcaacgggtctcaaaactga 61
             |||||||||||||||||||||
Sbjct: 85896 ctcaacgggtctcaaaactga 85876
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>gb|BC029294.1| Homo sapiens ELL associated factor 1, mRNA (cDNA clone
           IMAGE:5169496)
          Length = 822

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 327 ctgaggtcccgaggatccatgtcag 351
           |||||||||||||||||||| ||||
Sbjct: 186 ctgaggtcccgaggatccatctcag 210
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>ref|XM_965514.1| PREDICTED: Tribolium castaneum similar to CG1318-PA, isoform A
            (LOC659187), mRNA
          Length = 1797

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 514  tgccatccgatatatgccgagcacc 538
            |||||||||||||||| ||||||||
Sbjct: 1487 tgccatccgatatatggcgagcacc 1463
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>emb|Z23023.1|STMALDEHB S.tuberosum mRNA for precursor of the mitochondrial NAD+-dependent
            malic enzyme (malate dehydrogenase)
          Length = 2251

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 492  cactcagctgcagcatgtagcatgccatc 520
            |||||||||||||| |||| |||||||||
Sbjct: 1656 cactcagctgcagcctgtaacatgccatc 1628
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>gb|AC008916.7| Homo sapiens chromosome 5 clone CTD-2271P9, complete sequence
          Length = 133862

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 573   agatacatgttgtttgcttga 593
             |||||||||||||||||||||
Sbjct: 67572 agatacatgttgtttgcttga 67552
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>gb|AC148817.3| Medicago truncatula chromosome 7 BAC clone mth2-22c10, complete
             sequence
          Length = 123020

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 567   ggaaacagatacatgttgtttgcttgatt 595
             |||||||| ||||||||||| ||||||||
Sbjct: 35933 ggaaacaggtacatgttgttggcttgatt 35961
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 41       ctcaacgggtctcaaaactga 61
                |||||||||||||||||||||
Sbjct: 10921269 ctcaacgggtctcaaaactga 10921289
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 389      ggcgactgcagcgccgacacg 409
                |||||||||||||||||||||
Sbjct: 24626953 ggcgactgcagcgccgacacg 24626933
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>gb|AC090883.1|AC090883 Homo sapiens chromosome 3 clone RP11-117G9 map 3p, complete sequence
          Length = 172400

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 327    ctgaggtcccgaggatccatgtcag 351
              |||||||||||||||||||| ||||
Sbjct: 124329 ctgaggtcccgaggatccatctcag 124305
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>gb|AC027125.5| Homo sapiens chromosome 3 clone RP11-584M7 map 3p, complete sequence
          Length = 173842

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 327   ctgaggtcccgaggatccatgtcag 351
             |||||||||||||||||||| ||||
Sbjct: 65810 ctgaggtcccgaggatccatctcag 65786
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>gb|AC008959.4|AC008959 Homo sapiens chromosome 5 clone CTD-2354D23, complete sequence
          Length = 98620

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 573  agatacatgttgtttgcttga 593
            |||||||||||||||||||||
Sbjct: 9477 agatacatgttgtttgcttga 9457
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>dbj|AP000364.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0026F07
          Length = 137354

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 389    ggcgactgcagcgccgacacg 409
              |||||||||||||||||||||
Sbjct: 135213 ggcgactgcagcgccgacacg 135193
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>dbj|AK068577.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157I04, full
            insert sequence
          Length = 2939

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 41   ctcaacgggtctcaaaactga 61
            |||||||||||||||||||||
Sbjct: 2300 ctcaacgggtctcaaaactga 2320
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 41       ctcaacgggtctcaaaactga 61
                |||||||||||||||||||||
Sbjct: 11000458 ctcaacgggtctcaaaactga 11000478
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>tpd|BR000069.1| TPA: TPA_exp: Ciona intestinalis Ci-ZF(C2H2)-66 mRNA for zinc
           finger protein, complete cds
          Length = 1706

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 360 tcggccaaatcttcatcaaca 380
           |||||||||||||||||||||
Sbjct: 625 tcggccaaatcttcatcaaca 605
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>gb|AC115065.11| Mus musculus chromosome 3, clone RP24-401H12, complete sequence
          Length = 157225

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 489   aggcactcagctgcagcatg 508
             ||||||||||||||||||||
Sbjct: 26004 aggcactcagctgcagcatg 25985
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>ref|XM_454101.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E03377g predicted mRNA
          Length = 864

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 364 ccaaatcttcatcaacagca 383
           ||||||||||||||||||||
Sbjct: 79  ccaaatcttcatcaacagca 60
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>gb|AC131110.3| Mus musculus BAC clone RP23-387J23 from chromosome 6, complete sequence
          Length = 205463

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 543    agaagggctcctaaaccaat 562
              ||||||||||||||||||||
Sbjct: 101346 agaagggctcctaaaccaat 101327
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>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 2234072

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 364    ccaaatcttcatcaacagca 383
              ||||||||||||||||||||
Sbjct: 316794 ccaaatcttcatcaacagca 316775
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>gb|AC153634.3| Mus musculus 6 BAC RP23-368O2 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 190237

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 543    agaagggctcctaaaccaat 562
              ||||||||||||||||||||
Sbjct: 182042 agaagggctcctaaaccaat 182061
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>gb|AF353511.1|AF353511 Porcine epidemic diarrhea virus strain CV777, complete genome
          Length = 28033

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    gtcaacgtaaacaaatgagg 99
             ||||||||||||||||||||
Sbjct: 20624 gtcaacgtaaacaaatgagg 20643
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>gb|BC113247.1| Bos taurus cDNA clone IMAGE:8083724
          Length = 2046

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 183  cactaatcagaacaaatgta 202
            ||||||||||||||||||||
Sbjct: 1494 cactaatcagaacaaatgta 1475
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>gb|AC149333.2| Phakopsora pachyrhizi clone JGIAFNA-25D11, complete sequence
          Length = 37057

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 368   atcttcatcaacagcagcac 387
             ||||||||||||||||||||
Sbjct: 13563 atcttcatcaacagcagcac 13582


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,871,625
Number of Sequences: 3902068
Number of extensions: 4871625
Number of successful extensions: 88431
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88216
Number of HSP's gapped (non-prelim): 215
length of query: 611
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 588
effective length of database: 17,143,297,704
effective search space: 10080259049952
effective search space used: 10080259049952
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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