>ref|XM_466770.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2261

 Score =  216 bits (109), Expect = 5e-53
 Identities = 204/237 (86%), Gaps = 9/237 (3%)
 Strand = Plus / Minus

                                                                        
Query: 235  actactctggtgaagaaaccaactcaacgtccctggaggatggatcatcgtcttcgtatt 294
            |||||||||| |||||||||| ||| || |||||||||||||||||||| ||||| | ||
Sbjct: 1990 actactctggagaagaaaccatctctacctccctggaggatggatcatcatcttcatctt 1931

                                                                        
Query: 295  cagaaatatcatcaccagtgctaattatatctgtgtagcttgtgttgcttgcctgcctaa 354
            | || |||||||| ||||||||  |||||||||| ||| |         |||||| ||||
Sbjct: 1930 ctgagatatcatctccagtgctggttatatctgtatagtt---------tgcctgtctaa 1880

                                                                        
Query: 355  caaactgaccccgcaccctcggccttgtttcagcaagtttcttcctattaacatacctca 414
            |||| || || |||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 1879 caaattgccctcgcaccctcggccttgtttcagcaagtttcttcctattcacgtacctca 1820

                                                                     
Query: 415  ccttcttgtcaaaacagcggtccttccttttctgcctgaattttgcaagtgctgcag 471
            |||||||||||||||| || |||||||||||| |||||||||| |||||||||||||
Sbjct: 1819 ccttcttgtcaaaacaacgttccttccttttcagcctgaatttggcaagtgctgcag 1763

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  216 bits (109), Expect = 5e-53
 Identities = 204/237 (86%), Gaps = 9/237 (3%)
 Strand = Plus / Minus

                                                                            
Query: 235      actactctggtgaagaaaccaactcaacgtccctggaggatggatcatcgtcttcgtatt 294
                |||||||||| |||||||||| ||| || |||||||||||||||||||| ||||| | ||
Sbjct: 24591513 actactctggagaagaaaccatctctacctccctggaggatggatcatcatcttcatctt 24591454

                                                                            
Query: 295      cagaaatatcatcaccagtgctaattatatctgtgtagcttgtgttgcttgcctgcctaa 354
                | || |||||||| ||||||||  |||||||||| ||| |         |||||| ||||
Sbjct: 24591453 ctgagatatcatctccagtgctggttatatctgtatagtt---------tgcctgtctaa 24591403

                                                                            
Query: 355      caaactgaccccgcaccctcggccttgtttcagcaagtttcttcctattaacatacctca 414
                |||| || || |||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 24591402 caaattgccctcgcaccctcggccttgtttcagcaagtttcttcctattcacgtacctca 24591343

                                                                         
Query: 415      ccttcttgtcaaaacagcggtccttccttttctgcctgaattttgcaagtgctgcag 471
                |||||||||||||||| || |||||||||||| |||||||||| |||||||||||||
Sbjct: 24591342 ccttcttgtcaaaacaacgttccttccttttcagcctgaatttggcaagtgctgcag 24591286

>dbj|AP003980.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1014_H03
          Length = 132696

 Score =  216 bits (109), Expect = 5e-53
 Identities = 204/237 (86%), Gaps = 9/237 (3%)
 Strand = Plus / Minus

                                                                          
Query: 235    actactctggtgaagaaaccaactcaacgtccctggaggatggatcatcgtcttcgtatt 294
              |||||||||| |||||||||| ||| || |||||||||||||||||||| ||||| | ||
Sbjct: 105614 actactctggagaagaaaccatctctacctccctggaggatggatcatcatcttcatctt 105555

                                                                          
Query: 295    cagaaatatcatcaccagtgctaattatatctgtgtagcttgtgttgcttgcctgcctaa 354
              | || |||||||| ||||||||  |||||||||| ||| |         |||||| ||||
Sbjct: 105554 ctgagatatcatctccagtgctggttatatctgtatagtt---------tgcctgtctaa 105504

                                                                          
Query: 355    caaactgaccccgcaccctcggccttgtttcagcaagtttcttcctattaacatacctca 414
              |||| || || |||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 105503 caaattgccctcgcaccctcggccttgtttcagcaagtttcttcctattcacgtacctca 105444

                                                                       
Query: 415    ccttcttgtcaaaacagcggtccttccttttctgcctgaattttgcaagtgctgcag 471
              |||||||||||||||| || |||||||||||| |||||||||| |||||||||||||
Sbjct: 105443 ccttcttgtcaaaacaacgttccttccttttcagcctgaatttggcaagtgctgcag 105387

>dbj|AP004083.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1212_C01
          Length = 124548

 Score =  216 bits (109), Expect = 5e-53
 Identities = 204/237 (86%), Gaps = 9/237 (3%)
 Strand = Plus / Minus

                                                                         
Query: 235   actactctggtgaagaaaccaactcaacgtccctggaggatggatcatcgtcttcgtatt 294
             |||||||||| |||||||||| ||| || |||||||||||||||||||| ||||| | ||
Sbjct: 36062 actactctggagaagaaaccatctctacctccctggaggatggatcatcatcttcatctt 36003

                                                                         
Query: 295   cagaaatatcatcaccagtgctaattatatctgtgtagcttgtgttgcttgcctgcctaa 354
             | || |||||||| ||||||||  |||||||||| ||| |         |||||| ||||
Sbjct: 36002 ctgagatatcatctccagtgctggttatatctgtatagtt---------tgcctgtctaa 35952

                                                                         
Query: 355   caaactgaccccgcaccctcggccttgtttcagcaagtttcttcctattaacatacctca 414
             |||| || || |||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 35951 caaattgccctcgcaccctcggccttgtttcagcaagtttcttcctattcacgtacctca 35892

                                                                      
Query: 415   ccttcttgtcaaaacagcggtccttccttttctgcctgaattttgcaagtgctgcag 471
             |||||||||||||||| || |||||||||||| |||||||||| |||||||||||||
Sbjct: 35891 ccttcttgtcaaaacaacgttccttccttttcagcctgaatttggcaagtgctgcag 35835

>dbj|AB189038.1| Oryza sativa (japonica cultivar-group) OsPRR1 mRNA for
            pseudo-response regulator 1, complete cds
          Length = 1557

 Score =  214 bits (108), Expect = 2e-52
 Identities = 203/236 (86%), Gaps = 9/236 (3%)
 Strand = Plus / Minus

                                                                        
Query: 236  ctactctggtgaagaaaccaactcaacgtccctggaggatggatcatcgtcttcgtattc 295
            ||||||||| |||||||||| ||| || |||||||||||||||||||| ||||| | |||
Sbjct: 1557 ctactctggagaagaaaccatctctacctccctggaggatggatcatcatcttcatcttc 1498

                                                                        
Query: 296  agaaatatcatcaccagtgctaattatatctgtgtagcttgtgttgcttgcctgcctaac 355
             || |||||||| ||||||||  |||||||||| ||| |         |||||| |||||
Sbjct: 1497 tgagatatcatctccagtgctggttatatctgtatagtt---------tgcctgtctaac 1447

                                                                        
Query: 356  aaactgaccccgcaccctcggccttgtttcagcaagtttcttcctattaacatacctcac 415
            ||| || || |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1446 aaattgccctcgcaccctcggccttgtttcagcaagtttcttcctattcacgtacctcac 1387

                                                                    
Query: 416  cttcttgtcaaaacagcggtccttccttttctgcctgaattttgcaagtgctgcag 471
            ||||||||||||||| || |||||||||||| |||||||||| |||||||||||||
Sbjct: 1386 cttcttgtcaaaacaacgttccttccttttcagcctgaatttggcaagtgctgcag 1331

>dbj|AK111828.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064H19, full
            insert sequence
          Length = 2261

 Score =  200 bits (101), Expect = 3e-48
 Identities = 202/237 (85%), Gaps = 9/237 (3%)
 Strand = Plus / Minus

                                                                        
Query: 235  actactctggtgaagaaaccaactcaacgtccctggaggatggatcatcgtcttcgtatt 294
            |||||||||| |||||||||| ||| || |||||||||||||||||||| ||||| | ||
Sbjct: 1990 actactctggagaagaaaccatctctacctccctggaggatggatcatcatcttcatctt 1931

                                                                        
Query: 295  cagaaatatcatcaccagtgctaattatatctgtgtagcttgtgttgcttgcctgcctaa 354
            | || |||||||| ||||||||  |||||||||| ||| |         |||||| ||||
Sbjct: 1930 ctgagatatcatctccagtgctggttatatctgtatagtt---------tgcctgtctaa 1880

                                                                        
Query: 355  caaactgaccccgcaccctcggccttgtttcagcaagtttcttcctattaacatacctca 414
            |||| || || |||||||||||| ||||||||||| ||||||||||||| || |||||||
Sbjct: 1879 caaattgccctcgcaccctcggcgttgtttcagcatgtttcttcctattcacgtacctca 1820

                                                                     
Query: 415  ccttcttgtcaaaacagcggtccttccttttctgcctgaattttgcaagtgctgcag 471
            |||||||||||||||| || |||||||||||| |||||||||| |||||||||||||
Sbjct: 1819 ccttcttgtcaaaacaacgttccttccttttcagcctgaatttggcaagtgctgcag 1763

>gb|AY611028.1| Castanea sativa timing of CAB expression 1 protein (TOC1) mRNA,
            complete cds
          Length = 2639

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 82/98 (83%)
 Strand = Plus / Minus

                                                                        
Query: 354  acaaactgaccccgcaccctcggccttgtttcagcaagtttcttcctattaacatacctc 413
            |||||||| |||||||| |  |||||| ||||||||||| | || | ||||||||| || 
Sbjct: 1916 acaaactggccccgcacacgaggccttctttcagcaagtctttttcgattaacatatcta 1857

                                                  
Query: 414  accttcttgtcaaaacagcggtccttccttttctgcct 451
            | |||||| |||||||| || ||||| |||||||||||
Sbjct: 1856 atcttcttatcaaaacatcgctcctttcttttctgcct 1819

>gb|AY371288.1| Mesembryanthemum crystallinum timing of CAB expression 1 (TOC1) mRNA,
            complete cds
          Length = 2617

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                        
Query: 350  cctaacaaactgaccccgcaccctcggccttgtttcagcaagtttcttcctattaacata 409
            |||||||||||| || ||||| |  |||||| | |||||||| || || | |||||||||
Sbjct: 1943 cctaacaaactgtccacgcacacgaggccttctctcagcaagctttttacgattaacata 1884

                                 
Query: 410  cctcaccttcttgtcaaaaca 430
            ||| | |||||| ||||||||
Sbjct: 1883 cctaatcttcttatcaaaaca 1863

>gb|AC134569.4| Mus musculus BAC clone RP24-240H21 from chromosome 16, complete
             sequence
          Length = 168794

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 425   aaaacagcggtccttcctttt 445
             |||||||||||||||||||||
Sbjct: 67238 aaaacagcggtccttcctttt 67258

>gb|AC147045.2| Mus musculus BAC clone RP23-100E5 from chromosome 16, complete sequence
          Length = 191975

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 425   aaaacagcggtccttcctttt 445
             |||||||||||||||||||||
Sbjct: 36450 aaaacagcggtccttcctttt 36430

>emb|CR731601.2|CNS0GRG6 Tetraodon nigroviridis full-length cDNA
          Length = 1715

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 434 gtccttccttttctgcctgaa 454
           |||||||||||||||||||||
Sbjct: 562 gtccttccttttctgcctgaa 542

>emb|AL356309.23| Human DNA sequence from clone RP11-205K6 on chromosome 9 Contains two
             novel genes and a CpG island, complete sequence
          Length = 44255

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 436   ccttccttttctgcctgaatt 456
             |||||||||||||||||||||
Sbjct: 27819 ccttccttttctgcctgaatt 27839

>gb|AC148666.1| Macaca mulatta Major Histocompatibility Complex BAC MMU024N14, complete
             sequence
          Length = 174992

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 34    aaaatacaattgctcaaaatgtcca 58
             ||||| |||||||||||||||||||
Sbjct: 25840 aaaatgcaattgctcaaaatgtcca 25864

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 290      gtattcagaaatatcatcacc 310
                |||||||||||||||||||||
Sbjct: 35618528 gtattcagaaatatcatcacc 35618508

>dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partial and complete cds
          Length = 3284914

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 34     aaaatacaattgctcaaaatgtcca 58
              ||||| |||||||||||||||||||
Sbjct: 313242 aaaatgcaattgctcaaaatgtcca 313218

>dbj|AP004366.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0460C04
          Length = 189043

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 290   gtattcagaaatatcatcacc 310
             |||||||||||||||||||||
Sbjct: 21865 gtattcagaaatatcatcacc 21845

>emb|CT573339.6| M.truncatula DNA sequence from clone MTH2-82H11 on chromosome 3,
             complete sequence
          Length = 107004

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 238   actctggtgaagaaaccaact 258
             |||||||||||||||||||||
Sbjct: 17253 actctggtgaagaaaccaact 17273

>emb|AL805958.8| Mouse DNA sequence from clone RP23-179F9 on chromosome 2, complete
             sequence
          Length = 198627

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 98    gttgggggttgaggatgtatt 118
             |||||||||||||||||||||
Sbjct: 91080 gttgggggttgaggatgtatt 91060

>gb|AC005608.1| Homo sapiens chromosome 5, PAC clone 53L17 (LBNL H152), complete
           sequence
          Length = 119298

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 34  aaaatacaattgctcaaaat 53
           ||||||||||||||||||||
Sbjct: 719 aaaatacaattgctcaaaat 700

>gb|AC149429.1| Populus trichocarpa clone Pop1-109D09, complete sequence
          Length = 94633

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 379   ttgtttcagcaagtttcttc 398
             ||||||||||||||||||||
Sbjct: 65539 ttgtttcagcaagtttcttc 65520

>gb|U42436.1| Caenorhabditis elegans cosmid C49H3, complete sequence
          Length = 37516

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 379   ttgtttcagcaagtttcttc 398
             ||||||||||||||||||||
Sbjct: 30593 ttgtttcagcaagtttcttc 30574

>gb|AC125119.2| Mus musculus BAC clone RP24-266E24 from chromosome 6, complete sequence
          Length = 194445

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    tgagcaaaatgatgcatttg 141
              ||||||||||||||||||||
Sbjct: 176260 tgagcaaaatgatgcatttg 176241

>gb|AC125313.2| Mus musculus BAC clone RP24-353A16 from 5, complete sequence
          Length = 152433

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 170    tttctgagttgcaaagtaag 189
              ||||||||||||||||||||
Sbjct: 109146 tttctgagttgcaaagtaag 109165

>gb|AC125343.2| Mus musculus BAC clone RP24-537A5 from 5, complete sequence
          Length = 131476

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    tttctgagttgcaaagtaag 189
              ||||||||||||||||||||
Sbjct: 127902 tttctgagttgcaaagtaag 127883

>gb|AC093015.5| Homo sapiens 12q BAC RP11-534K23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 115294

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 313   tgctaattatatctgtgtagcttg 336
             ||||||| ||||||||||||||||
Sbjct: 94715 tgctaatcatatctgtgtagcttg 94738

>gb|AC108121.2| Homo sapiens chromosome 5 clone RP11-553D6, complete sequence
          Length = 148288

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    aaaatacaattgctcaaaat 53
             ||||||||||||||||||||
Sbjct: 18958 aaaatacaattgctcaaaat 18977

>gb|AC019089.6| Homo sapiens BAC clone RP11-370L14 from 4, complete sequence
          Length = 177160

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   ctatgctttctgagttgcaa 183
             ||||||||||||||||||||
Sbjct: 81023 ctatgctttctgagttgcaa 81004

>gb|AC092038.3| Homo sapiens chromosome 3 clone RP11-89F18, complete sequence
          Length = 170948

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 331   agcttgtgttgcttgcctgc 350
             ||||||||||||||||||||
Sbjct: 55778 agcttgtgttgcttgcctgc 55797

>dbj|AB195263.1| Physcomitrella patens PpMinE1 gene for plastid division site
           determinant MinE, complete cds
          Length = 1951

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 292 attcagaaatatcatcacca 311
           ||||||||||||||||||||
Sbjct: 360 attcagaaatatcatcacca 341

>gb|AC080017.8|AC080017 Mus musculus 3 BAC RP23-170H11 (Roswell Park Cancer Institute Mouse
            BAC Library) complete sequence
          Length = 98420

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 115  tattgtgtgagcaaaatgat 134
            ||||||||||||||||||||
Sbjct: 9853 tattgtgtgagcaaaatgat 9872

>gb|AC174778.2| Mus musculus BAC clone RP23-185A7 from chromosome 6, complete sequence
          Length = 207415

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   tgagcaaaatgatgcatttg 141
             ||||||||||||||||||||
Sbjct: 63537 tgagcaaaatgatgcatttg 63556

>emb|AM167702.1| Trichostrongylus tenuis microsatellite DNA, clone Tte154REP
          Length = 382

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 449 cctgaattttgcaagtgctg 468
           ||||||||||||||||||||
Sbjct: 255 cctgaattttgcaagtgctg 274

>emb|AL606986.27| Mouse DNA sequence from clone RP23-258K3 on chromosome 4, complete
             sequence
          Length = 219634

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 325   ctgtgtagcttgtgttgcttgcct 348
             ||||||||||||||||||| ||||
Sbjct: 85953 ctgtgtagcttgtgttgctggcct 85930

>emb|AL606928.9| Mouse DNA sequence from clone RP23-154F2 on chromosome 3, complete
             sequence
          Length = 186605

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   tattgtgtgagcaaaatgat 134
             ||||||||||||||||||||
Sbjct: 25829 tattgtgtgagcaaaatgat 25810


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,496,682
Number of Sequences: 3902068
Number of extensions: 4496682
Number of successful extensions: 81440
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81284
Number of HSP's gapped (non-prelim): 156
length of query: 471
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 449
effective length of database: 17,147,199,772
effective search space: 7699092697628
effective search space used: 7699092697628
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)