ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags9h08 |
|---|---|
| Clone Library Name | barley_pub |
>CSN4_ARATH (Q8L5U0) COP9 signalosome complex subunit 4 (Signalosome subunit 4)| (Constitutive photomorphogenesis protein 8) (FUSCA protein 4) (FUSCA4) (AtS4) Length = 397 Score = 331 bits (849), Expect(2) = 3e-91 Identities = 166/193 (86%), Positives = 179/193 (92%) Frame = -1 Query: 670 RLSNAQIGDEEIDENALEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYPILQ 491 ++ QIGDEEIDENALEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYPILQ Sbjct: 205 QIEQRQIGDEEIDENALEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYPILQ 264 Query: 490 KVFLERILRKPEIDAFAEELKPHQKALLPDKSTVLDRAMIEHNLLSASKLYTNISFEELG 311 KV+LERILR+PEIDAF+EEL+PHQKA LPDKSTVLDRAMIEHNLLSASKLYTNI F+ELG Sbjct: 265 KVYLERILRRPEIDAFSEELRPHQKASLPDKSTVLDRAMIEHNLLSASKLYTNIRFDELG 324 Query: 310 TLLGIDPRKAEKIACRMICEDRMRGSIDQVEAVIHFEDDXEGLQQWDQQIAGLCQALNDI 131 TLL IDPRKAEKIA MI +DRMRGSIDQ EAVIHFEDD E LQQWDQQI+GLCQALNDI Sbjct: 325 TLLAIDPRKAEKIAANMIGQDRMRGSIDQEEAVIHFEDDVEELQQWDQQISGLCQALNDI 384 Query: 130 LDSMSSKGIAIPV 92 LD M+ KG+++PV Sbjct: 385 LDGMAKKGMSVPV 397 Score = 24.6 bits (52), Expect(2) = 3e-91 Identities = 10/10 (100%), Positives = 10/10 (100%) Frame = -3 Query: 686 YYGISQIEQR 657 YYGISQIEQR Sbjct: 200 YYGISQIEQR 209
>CSN4_BRARE (Q6P0H6) COP9 signalosome complex subunit 4 (Signalosome subunit 4)| Length = 406 Score = 192 bits (489), Expect = 6e-49 Identities = 99/174 (56%), Positives = 127/174 (72%) Frame = -1 Query: 637 IDENALEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYPILQKVFLERILRKP 458 + E +AL A+ CTILA AG QRSR+LATL+KDERC +L Y IL+K++L+RI+R Sbjct: 217 VHETERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGN 276 Query: 457 EIDAFAEELKPHQKALLPDKSTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIDPRKAE 278 ++ FA L PHQKA D S++LDRA+IEHNLLSASKLY NI+FEELG LL I P KAE Sbjct: 277 QLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPPAKAE 336 Query: 277 KIACRMICEDRMRGSIDQVEAVIHFEDDXEGLQQWDQQIAGLCQALNDILDSMS 116 KIA +MI E RM G IDQ++ ++HFE E L WD+QI LC +N++L+ +S Sbjct: 337 KIASQMITEGRMNGFIDQIDGIVHFE-TREPLPTWDKQIQSLCFQVNNLLEKIS 389
>CSN4_DROME (Q9V345) COP9 signalosome complex subunit 4 (Signalosome subunit 4)| (Dch4) Length = 407 Score = 191 bits (486), Expect = 1e-48 Identities = 98/174 (56%), Positives = 125/174 (71%) Frame = -1 Query: 637 IDENALEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYPILQKVFLERILRKP 458 +D+ AL A+ CT+LA AG QRSR+LATL+KDERC L Y IL+K++LERI+R+ Sbjct: 224 VDQGERMTALKKALICTVLASAGQQRSRMLATLFKDERCQHLPAYGILEKMYLERIIRRS 283 Query: 457 EIDAFAEELKPHQKALLPDKSTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIDPRKAE 278 E+ F L+ HQKA D S++LDRA+ EHNLLSASKLY NI+FEELG LL I KAE Sbjct: 284 ELQEFEALLQDHQKAATSDGSSILDRAVFEHNLLSASKLYNNITFEELGALLDIPAVKAE 343 Query: 277 KIACRMICEDRMRGSIDQVEAVIHFEDDXEGLQQWDQQIAGLCQALNDILDSMS 116 KIA +MI E RM G IDQ+ A++HFE + E L QWD+QI LC +N I++ +S Sbjct: 344 KIASQMITEGRMNGHIDQISAIVHFE-NRELLPQWDRQIQSLCYQVNSIIEKIS 396
>CSN4_RAT (Q68FS2) COP9 signalosome complex subunit 4 (Signalosome subunit 4)| (SGN4) (JAB1-containing signalosome subunit 4) Length = 406 Score = 191 bits (484), Expect = 2e-48 Identities = 98/174 (56%), Positives = 127/174 (72%) Frame = -1 Query: 637 IDENALEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYPILQKVFLERILRKP 458 + E+ +AL A+ CTILA AG QRSR+LATL+KDERC +L Y IL+K++L+RI+R Sbjct: 217 VHESERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGN 276 Query: 457 EIDAFAEELKPHQKALLPDKSTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIDPRKAE 278 ++ FA L PHQKA D S++LDRA+IEHNLLSASKLY NI+FEELG LL I KAE Sbjct: 277 QLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAE 336 Query: 277 KIACRMICEDRMRGSIDQVEAVIHFEDDXEGLQQWDQQIAGLCQALNDILDSMS 116 KIA +MI E RM G IDQ++ ++HFE E L WD+QI LC +N++L+ +S Sbjct: 337 KIASQMITEGRMNGFIDQIDGIVHFE-TREALPTWDKQIQSLCFQVNNLLEKIS 389
>CSN4_MOUSE (O88544) COP9 signalosome complex subunit 4 (Signalosome subunit 4)| (SGN4) (JAB1-containing signalosome subunit 4) Length = 406 Score = 191 bits (484), Expect = 2e-48 Identities = 98/174 (56%), Positives = 127/174 (72%) Frame = -1 Query: 637 IDENALEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYPILQKVFLERILRKP 458 + E+ +AL A+ CTILA AG QRSR+LATL+KDERC +L Y IL+K++L+RI+R Sbjct: 217 VHESERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGN 276 Query: 457 EIDAFAEELKPHQKALLPDKSTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIDPRKAE 278 ++ FA L PHQKA D S++LDRA+IEHNLLSASKLY NI+FEELG LL I KAE Sbjct: 277 QLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAE 336 Query: 277 KIACRMICEDRMRGSIDQVEAVIHFEDDXEGLQQWDQQIAGLCQALNDILDSMS 116 KIA +MI E RM G IDQ++ ++HFE E L WD+QI LC +N++L+ +S Sbjct: 337 KIASQMITEGRMNGFIDQIDGIVHFE-TREALPTWDKQIQSLCFQVNNLLEKIS 389
>CSN4_HUMAN (Q9BT78) COP9 signalosome complex subunit 4 (Signalosome subunit 4)| (SGN4) (JAB1-containing signalosome subunit 4) Length = 406 Score = 191 bits (484), Expect = 2e-48 Identities = 98/174 (56%), Positives = 127/174 (72%) Frame = -1 Query: 637 IDENALEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYPILQKVFLERILRKP 458 + E+ +AL A+ CTILA AG QRSR+LATL+KDERC +L Y IL+K++L+RI+R Sbjct: 217 VHESERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGN 276 Query: 457 EIDAFAEELKPHQKALLPDKSTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIDPRKAE 278 ++ FA L PHQKA D S++LDRA+IEHNLLSASKLY NI+FEELG LL I KAE Sbjct: 277 QLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAE 336 Query: 277 KIACRMICEDRMRGSIDQVEAVIHFEDDXEGLQQWDQQIAGLCQALNDILDSMS 116 KIA +MI E RM G IDQ++ ++HFE E L WD+QI LC +N++L+ +S Sbjct: 337 KIASQMITEGRMNGFIDQIDGIVHFE-TREALPTWDKQIQSLCFQVNNLLEKIS 389
>CSN4_CAEEL (Q9N359) COP9 signalosome complex subunit 4 (Signalosome subunit 4)| Length = 412 Score = 133 bits (335), Expect = 5e-31 Identities = 67/178 (37%), Positives = 108/178 (60%) Frame = -1 Query: 643 EEIDENALEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYPILQKVFLERILR 464 E++ + AL A+ C +LA GPQRSR+L ++KDER K + ++ K++L +++ Sbjct: 228 EQLPNSDKLTALGKAIVCVLLAKPGPQRSRLLTLIFKDERAPKCASFELIAKMYLTKVIH 287 Query: 463 KPEIDAFAEELKPHQKALLPDKSTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIDPRK 284 K E++ F +L+ HQKA +S +L + EHN+ + S+LY NISF+ LG LLG+D Sbjct: 288 KDELEEFEHQLQDHQKADEHGES-ILKGVIQEHNITAISQLYINISFKTLGQLLGVDTEA 346 Query: 283 AEKIACRMICEDRMRGSIDQVEAVIHFEDDXEGLQQWDQQIAGLCQALNDILDSMSSK 110 AE +A MI +R+ G IDQ ++HFE D ++ WD QI + +N + D + ++ Sbjct: 347 AESMAGEMISSERLHGYIDQTNGILHFE-DSNPMRVWDSQILSTLEQINKVSDMIVAR 403
>PSD12_PONPY (Q5RBI3) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 48.1 bits (113), Expect = 3e-05 Identities = 39/180 (21%), Positives = 80/180 (44%), Gaps = 19/180 (10%) Frame = -1 Query: 619 EQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYPILQKVF--LERILRKPEIDA 446 +QAL + V ILA ++S ++ + D++ ++ Y L K+F +E + ++ Sbjct: 263 QQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWSTLVED 322 Query: 445 FAEELKPHQKALLPDKSTV--------------LDRAMIEHNLLSASKLYTNISFEELGT 308 + EL+ K L +T L ++EHN+ +K YT I+ + + Sbjct: 323 YGMELR---KGSLESPATDVFGSTEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQ 379 Query: 307 LLGIDPRKAEKIACRMICEDRMRGSIDQVEAVIHFE---DDXEGLQQWDQQIAGLCQALN 137 LL + ++E ++ + +D++ +I+F+ D L W Q++ L +N Sbjct: 380 LLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVN 439
>PSD12_MOUSE (Q9D8W5) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 48.1 bits (113), Expect = 3e-05 Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 24/192 (12%) Frame = -1 Query: 640 EIDENALEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYPILQKVFLERILRK 461 + + + +QAL + V ILA ++S ++ + D++ ++ Y L K+F L + Sbjct: 256 QAESDKWQQALKSVVLYVILAPFDNEQSDLVHRISSDKKLEEIPKYKDLLKLFTTMELMR 315 Query: 460 -------------------PEIDAFA--EELKPHQKALLPDKSTVLDRAMIEHNLLSASK 344 P D F+ EE + K L KS V +EHN+ +K Sbjct: 316 WSTLVEDYGVELRKGSSETPATDVFSSTEEGEKRWKDL---KSRV-----VEHNIRIMAK 367 Query: 343 LYTNISFEELGTLLGIDPRKAEKIACRMICEDRMRGSIDQVEAVIHFE---DDXEGLQQW 173 YT I+ + + LL + ++E ++ + +D++ VI+F+ D L W Sbjct: 368 YYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDW 427 Query: 172 DQQIAGLCQALN 137 Q++ L +N Sbjct: 428 SQKLNSLMSLVN 439
>PSD12_HUMAN (O00232) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 48.1 bits (113), Expect = 3e-05 Identities = 39/180 (21%), Positives = 80/180 (44%), Gaps = 19/180 (10%) Frame = -1 Query: 619 EQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYPILQKVF--LERILRKPEIDA 446 +QAL + V ILA ++S ++ + D++ ++ Y L K+F +E + ++ Sbjct: 263 QQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWSTLVED 322 Query: 445 FAEELKPHQKALLPDKSTV--------------LDRAMIEHNLLSASKLYTNISFEELGT 308 + EL+ K L +T L ++EHN+ +K YT I+ + + Sbjct: 323 YGMELR---KGSLESPATDVFGSTEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQ 379 Query: 307 LLGIDPRKAEKIACRMICEDRMRGSIDQVEAVIHFE---DDXEGLQQWDQQIAGLCQALN 137 LL + ++E ++ + +D++ +I+F+ D L W Q++ L +N Sbjct: 380 LLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSLVN 439
>CSN4_BRAOL (P68359) COP9 signalosome complex subunit 4 (Signalosome subunit 4)| (Constitutive photomorphogenesis protein 8) (FUSCA protein 4) (FUSCA4) (Fragments) Length = 45 Score = 45.1 bits (105), Expect = 2e-04 Identities = 29/51 (56%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Frame = -1 Query: 493 QKVFLERILRKPEIDAFAEELKPHQKALLPDKSTVLDRAMIEH-NLLSASK 344 ++ FL+ LR I +KA LPDKSTVLDRAMIEH NLLSASK Sbjct: 1 KRKFLDAALRYYSISQI------EKKAYLPDKSTVLDRAMIEHNNLLSASK 45
>YMJ5_CAEEL (P34481) Hypothetical protein F59B2.5| Length = 468 Score = 43.1 bits (100), Expect = 8e-04 Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 5/150 (3%) Frame = -1 Query: 658 AQIGDEEIDENALEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYPILQKVFL 479 A IGD+ NA AL + C I+ Q + +LA E + K I+ + Sbjct: 284 ASIGDKI---NATS-ALKYMILCKIMLNETEQLAGLLAA---KEIVAYQKSPRIIAIRSM 336 Query: 478 ERILRKPEIDAFAEELKPHQKALLPDK-----STVLDRAMIEHNLLSASKLYTNISFEEL 314 RK + F + L H+ L+ DK S L+R M+E + + Y+ I + Sbjct: 337 ADAFRKRSLKDFVKALAEHKIELVEDKVVAVHSQNLERNMLEKEISRVIEPYSEIELSYI 396 Query: 313 GTLLGIDPRKAEKIACRMICEDRMRGSIDQ 224 ++G+ E+ RMI + ++ GSIDQ Sbjct: 397 ARVIGMTVPPVERAIARMILDKKLMGSIDQ 426
>CSN2_DROME (Q94899) COP9 signalosome complex subunit 2 (Signalosome subunit 2)| (Dch2) (Alien protein) Length = 444 Score = 41.2 bits (95), Expect = 0.003 Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 7/116 (6%) Frame = -1 Query: 478 ERILRKPEIDAFAEE-LKPHQKALLPDKSTVLDRAMIEHNLLSASKLYTNISFEELGTLL 302 E ILR+ + A++ ++ H + LL + T + L+ + Y NI+ + L Sbjct: 328 ETILRQHRSNIMADQFIREHIEDLLRNIRTQV--------LIKLIRPYKNIAIPFIANAL 379 Query: 301 GIDPRKAEKIACRMICEDRMRGSIDQVEAVIHFE------DDXEGLQQWDQQIAGL 152 I+P + E + I +D ++G IDQV V+ + L++W QI L Sbjct: 380 NIEPAEVESLLVSCILDDTIKGRIDQVNQVLQLDKINSSASRYNALEKWSNQIQSL 435
>CSN2_BRARE (Q6IQT4) COP9 signalosome complex subunit 2 (Signalosome subunit 2)| Length = 443 Score = 37.0 bits (84), Expect = 0.059 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 18/117 (15%) Frame = -1 Query: 436 ELKPHQKALLPDKSTVLDRAMIEHN------------LLSASKLYTNISFEELGTLLGID 293 ++ +K L + S ++D I + L+ K YT I + L ID Sbjct: 322 DITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNID 381 Query: 292 PRKAEKIACRMICEDRMRGSIDQVEAVIHFEDDXEG------LQQWDQQIAGLCQAL 140 E + + I ++ + G IDQV ++ + G L +W Q+ L QA+ Sbjct: 382 VADVESLLVQCILDNTINGRIDQVNQLLELDHQKRGGARYTALDKWTNQLNSLNQAI 438
>CSN2_XENLA (Q6IR75) COP9 signalosome complex subunit 2 (Signalosome subunit 2)| (Fragment) Length = 441 Score = 36.6 bits (83), Expect = 0.077 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 18/117 (15%) Frame = -1 Query: 436 ELKPHQKALLPDKSTVLDRAMIEHN------------LLSASKLYTNISFEELGTLLGID 293 ++ +K L + S ++D I + L+ K YT I + L ID Sbjct: 320 DITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNID 379 Query: 292 PRKAEKIACRMICEDRMRGSIDQVEAVIHFEDDXEG------LQQWDQQIAGLCQAL 140 E + + I ++ + G IDQV ++ + G L +W Q+ L QA+ Sbjct: 380 VADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGARYTALDKWTNQLNSLNQAV 436
>CSN2_RAT (P61203) COP9 signalosome complex subunit 2 (Signalosome subunit 2)| (SGN2) (JAB1-containing signalosome subunit 2) (Thyroid receptor-interacting protein 15) (Alien homolog) Length = 443 Score = 36.6 bits (83), Expect = 0.077 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 18/117 (15%) Frame = -1 Query: 436 ELKPHQKALLPDKSTVLDRAMIEHN------------LLSASKLYTNISFEELGTLLGID 293 ++ +K L + S ++D I + L+ K YT I + L ID Sbjct: 322 DITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNID 381 Query: 292 PRKAEKIACRMICEDRMRGSIDQVEAVIHFEDDXEG------LQQWDQQIAGLCQAL 140 E + + I ++ + G IDQV ++ + G L +W Q+ L QA+ Sbjct: 382 VADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGARYTALDKWTNQLNSLNQAV 438
>CSN2_MOUSE (P61202) COP9 signalosome complex subunit 2 (Signalosome subunit 2)| (SGN2) (JAB1-containing signalosome subunit 2) (Thyroid receptor-interacting protein 15) (Alien homolog) Length = 443 Score = 36.6 bits (83), Expect = 0.077 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 18/117 (15%) Frame = -1 Query: 436 ELKPHQKALLPDKSTVLDRAMIEHN------------LLSASKLYTNISFEELGTLLGID 293 ++ +K L + S ++D I + L+ K YT I + L ID Sbjct: 322 DITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNID 381 Query: 292 PRKAEKIACRMICEDRMRGSIDQVEAVIHFEDDXEG------LQQWDQQIAGLCQAL 140 E + + I ++ + G IDQV ++ + G L +W Q+ L QA+ Sbjct: 382 VADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGARYTALDKWTNQLNSLNQAV 438
>CSN2_HUMAN (P61201) COP9 signalosome complex subunit 2 (Signalosome subunit 2)| (SGN2) (JAB1-containing signalosome subunit 2) (Thyroid receptor-interacting protein 15) (Alien homolog) Length = 443 Score = 36.6 bits (83), Expect = 0.077 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 18/117 (15%) Frame = -1 Query: 436 ELKPHQKALLPDKSTVLDRAMIEHN------------LLSASKLYTNISFEELGTLLGID 293 ++ +K L + S ++D I + L+ K YT I + L ID Sbjct: 322 DITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNID 381 Query: 292 PRKAEKIACRMICEDRMRGSIDQVEAVIHFEDDXEG------LQQWDQQIAGLCQAL 140 E + + I ++ + G IDQV ++ + G L +W Q+ L QA+ Sbjct: 382 VADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGARYTALDKWTNQLNSLNQAV 438
>CSN3_BRARE (Q6P2U9) COP9 signalosome complex subunit 3 (Signalosome subunit 3)| Length = 423 Score = 34.3 bits (77), Expect = 0.38 Identities = 27/116 (23%), Positives = 58/116 (50%), Gaps = 11/116 (9%) Frame = -1 Query: 424 HQKALLPDKSTVLDR----AMIEHNLLSASKLYTNISFEELGTLLGID-PRKAEKIACRM 260 H + D +T L + ++ + N+ +K + +S +++ + + + P++AEK M Sbjct: 282 HSETFTRDNNTGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHM 341 Query: 259 ICEDRMRGSIDQVEAVIHFEDDXEG------LQQWDQQIAGLCQALNDILDSMSSK 110 I + + SI+Q + ++ F D+ E L + DQ++ C L++ L SM + Sbjct: 342 IEDGEIYASINQKDGMVCFHDNPEKYNNPAMLHKIDQEML-KCIELDEKLKSMDQE 396
>SCARL_ARATH (Q5XPK0) Scar-like domain-containing protein| Length = 2028 Score = 33.9 bits (76), Expect = 0.50 Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 1/114 (0%) Frame = -1 Query: 652 IGDEEIDENALEQALSAAVTCTILAGAGPQRSRVLATLYKDERCSKLKIYPILQKVFLER 473 +G+ +DE L + L TC L A P + T++ +E ++YP L+++ E+ Sbjct: 1135 LGEVVLDEEVLPEQLDT--TCRSLTKAAP-----IMTIFPEE---PPEVYPSLEELPEEK 1184 Query: 472 ILRKPEIDAFAEELKPH-QKALLPDKSTVLDRAMIEHNLLSASKLYTNISFEEL 314 I ++ E+D + P+ +A+ +K L+ H L S Y S EEL Sbjct: 1185 IAQEEEVD---DATHPYFSEAVCDEKIPPLEDPGSTHPSLEESVPYEEASHEEL 1235
>RPN6_YEAST (Q12377) 26S proteasome regulatory subunit RPN6 (Proteasome| non-ATPase subunit 4) Length = 434 Score = 33.5 bits (75), Expect = 0.65 Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 5/117 (4%) Frame = -1 Query: 445 FAEELKPHQKALLPDKST-----VLDRAMIEHNLLSASKLYTNISFEELGTLLGIDPRKA 281 F LK ++K L+ D+ T L ++E NL + + + + ++G+D ++ Sbjct: 314 FNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQV 373 Query: 280 EKIACRMICEDRMRGSIDQVEAVIHFEDDXEGLQQWDQQIAGLCQALNDILDSMSSK 110 E +MI + G +DQ ++ + +D + L LN ++D + K Sbjct: 374 EGKLSQMILDKIFYGVLDQGNGWLYVYETPNQDATYDSALE-LVGQLNKVVDQLFEK 429
>CSN3_MOUSE (O88543) COP9 signalosome complex subunit 3 (Signalosome subunit 3)| (SGN3) (JAB1-containing signalosome subunit 3) Length = 422 Score = 32.0 bits (71), Expect = 1.9 Identities = 15/65 (23%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Frame = -1 Query: 379 AMIEHNLLSASKLYTNISFEELGTLLGID-PRKAEKIACRMICEDRMRGSIDQVEAVIHF 203 ++ + N+ +K + +S +++ + + + P++AEK MI + + SI+Q + ++ F Sbjct: 300 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF 359 Query: 202 EDDXE 188 D+ E Sbjct: 360 HDNPE 364
>CSN3_HUMAN (Q9UNS2) COP9 signalosome complex subunit 3 (Signalosome subunit 3)| (SGN3) (JAB1-containing signalosome subunit 3) Length = 422 Score = 32.0 bits (71), Expect = 1.9 Identities = 15/65 (23%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Frame = -1 Query: 379 AMIEHNLLSASKLYTNISFEELGTLLGID-PRKAEKIACRMICEDRMRGSIDQVEAVIHF 203 ++ + N+ +K + +S +++ + + + P++AEK MI + + SI+Q + ++ F Sbjct: 300 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF 359 Query: 202 EDDXE 188 D+ E Sbjct: 360 HDNPE 364
>DYR_CRYNE (Q07801) Dihydrofolate reductase (EC 1.5.1.3)| Length = 229 Score = 31.6 bits (70), Expect = 2.5 Identities = 17/45 (37%), Positives = 25/45 (55%) Frame = -1 Query: 502 PILQKVFLERILRKPEIDAFAEELKPHQKALLPDKSTVLDRAMIE 368 P++ ++ L RIL E DA+ E+ H K PD S V +A I+ Sbjct: 158 PLIDRILLTRILSPFECDAYLEDFAAHTK---PDGSKVWKKASIK 199
>CYC3B_DESAF (P94691) Basic cytochrome c3 precursor| Length = 140 Score = 31.6 bits (70), Expect = 2.5 Identities = 16/35 (45%), Positives = 21/35 (60%) Frame = +1 Query: 100 SRFPCSTCCQGCRSTLGTAQQSVGPTAATLXCHPQ 204 S+ P S CQGC + TA+++ GPTA CH Q Sbjct: 108 SKSPMS--CQGCHKEMKTAKKTTGPTACA-QCHNQ 139
>RPOA_PRRSB (Q8B912) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:| Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP Length = 3963 Score = 30.0 bits (66), Expect = 7.2 Identities = 17/40 (42%), Positives = 21/40 (52%) Frame = +2 Query: 542 CSKNARALWASTSQYCACYSSTKSLLKSIFINLFIPNLGV 661 C+ NAR A YC S +SLL +NL +P LGV Sbjct: 10 CTPNARVFVAEGQVYCTRCLSARSLLP---LNLQVPELGV 46
>TBA8_CHICK (P09645) Tubulin alpha-8 chain (Fragment)| Length = 324 Score = 30.0 bits (66), Expect = 7.2 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Frame = -1 Query: 457 EIDAFAEELKPHQKALLP--DKSTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIDPRK 284 ++ F L P+ + P S ++ H LS S++ TN FE ++ DPR Sbjct: 126 DLTEFQTNLVPYPRIHFPLVTYSPIISAEKAYHEQLSVSEI-TNACFEPSNQMVKCDPRH 184 Query: 283 AEKIACRMI 257 + +AC M+ Sbjct: 185 GKYMACCML 193
>P115_MYCGE (P47540) Protein P115 homolog| Length = 982 Score = 30.0 bits (66), Expect = 7.2 Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 14/133 (10%) Frame = -1 Query: 532 DERCSKLKIYPILQKVFLERILRKPEIDAFAEELKPHQKAL----LPDKSTVLDRAMIEH 365 DE KLK +LQ F+ERI+ +I ELK + L K V A + H Sbjct: 606 DEMNRKLKYEELLQAKFIERIV---QIKKIILELKMEYEQLTNTTFDGKKAVASEAELIH 662 Query: 364 NLLSA--------SKLYTNISFEELGTLLGIDPRKAEK--IACRMICEDRMRGSIDQVEA 215 +L SA SKL N +EL L +++E+ + R + +++ + E Sbjct: 663 SLNSAWAKRDEINSKLKLN---QELKLQLAKTIKQSEEKIVDLRALLDEQRAKLVSAREG 719 Query: 214 VIHFEDDXEGLQQ 176 I FE+ + + + Sbjct: 720 KIRFENTIQNITE 732
>TBA_EUPVA (P28268) Tubulin alpha chain| Length = 450 Score = 30.0 bits (66), Expect = 7.2 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Frame = -1 Query: 457 EIDAFAEELKPHQKA--LLPDKSTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIDPRK 284 +I F L P+ + +L V+ H LS +++ TN SFE + DPR Sbjct: 251 DITEFQTNLVPYPRIHFMLSSYGPVISAEKAYHEQLSVAEI-TNSSFEPASMMAKCDPRH 309 Query: 283 AEKIACRMI 257 + +AC M+ Sbjct: 310 GKYMACCMM 318
>TBA_EUPOC (Q08114) Tubulin alpha chain| Length = 450 Score = 30.0 bits (66), Expect = 7.2 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Frame = -1 Query: 457 EIDAFAEELKPHQKA--LLPDKSTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIDPRK 284 ++ F L P+ + +L + V+ H LS +++ TN SFE + DPR Sbjct: 251 DVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEI-TNSSFEPASMMAKCDPRH 309 Query: 283 AEKIACRMI 257 + +AC M+ Sbjct: 310 GKYMACCMM 318
>TBAT_ONCMY (P18288) Tubulin alpha chain, testis-specific| Length = 450 Score = 30.0 bits (66), Expect = 7.2 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Frame = -1 Query: 457 EIDAFAEELKPHQKALLP--DKSTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIDPRK 284 ++ F L P+ + P + V+ H +LS +++ TN FE ++ DPR Sbjct: 251 DLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEMLSVAEI-TNACFEPANQMVKCDPRH 309 Query: 283 AEKIACRMI 257 + +AC M+ Sbjct: 310 GKYMACCML 318
>TBA3_DROME (P06605) Tubulin alpha-3 chain| Length = 450 Score = 30.0 bits (66), Expect = 7.2 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Frame = -1 Query: 457 EIDAFAEELKPHQKALLP--DKSTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIDPRK 284 ++ F L P+ + P + V+ H LS +++ TN FE ++ +DPR Sbjct: 251 DLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEI-TNACFEPANQMVKVDPRH 309 Query: 283 AEKIACRMI 257 + +AC M+ Sbjct: 310 GKYMACCML 318
>TBAN_GUITH (Q9SCC8) Tubulin alpha chain, nucleomorph (Nucleomorph alpha| tubulin) Length = 448 Score = 29.6 bits (65), Expect = 9.4 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Frame = -1 Query: 457 EIDAFAEELKPHQKA--LLPDKSTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIDPRK 284 +I F L P+ + +L + V+ M H S +++ TN +FE + DPR+ Sbjct: 251 DITEFQTNLVPYPRIHFMLSSLAPVISLEMANHEQYSTAEI-TNAAFEPNSMMAKCDPRR 309 Query: 283 AEKIAC 266 + +AC Sbjct: 310 GKYMAC 315
>TBA_TETTH (P41351) Tubulin alpha chain| Length = 449 Score = 29.6 bits (65), Expect = 9.4 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Frame = -1 Query: 457 EIDAFAEELKPHQKA--LLPDKSTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIDPRK 284 +I F L P+ + +L + ++ H LS +++ TN +FE + DPR Sbjct: 251 DITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEI-TNSAFEPANMMAKCDPRH 309 Query: 283 AEKIACRMI 257 + +AC M+ Sbjct: 310 GKYMACSMM 318
>TBA_TETPY (P10872) Tubulin alpha chain| Length = 449 Score = 29.6 bits (65), Expect = 9.4 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Frame = -1 Query: 457 EIDAFAEELKPHQKA--LLPDKSTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIDPRK 284 +I F L P+ + +L + ++ H LS +++ TN +FE + DPR Sbjct: 251 DITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEI-TNSAFEPANMMAKCDPRH 309 Query: 283 AEKIACRMI 257 + +AC M+ Sbjct: 310 GKYMACSMM 318
>ENGA_THEMA (Q9X1F8) GTP-binding protein engA (Double era-like domain protein)| Length = 439 Score = 29.6 bits (65), Expect = 9.4 Identities = 16/51 (31%), Positives = 29/51 (56%) Frame = -1 Query: 298 IDPRKAEKIACRMICEDRMRGSIDQVEAVIHFEDDXEGLQQWDQQIAGLCQ 146 ++PR EK + R+ SI++ + V+ D +G+ + DQ+IAGL + Sbjct: 244 VEPRTVEKYS-----NYRVVDSIEKADVVVIVLDATQGITRQDQRIAGLVE 289 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,234,970 Number of Sequences: 219361 Number of extensions: 2039020 Number of successful extensions: 6565 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 6208 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6552 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7082949625 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
