ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EUTC_PSEAE (Q9HX02) Ethanolamine ammonia-lyase light chain (EC 4... 30 7.2
2DYHC_ANTCR (P39057) Dynein beta chain, ciliary 29 9.5
3CU005_HUMAN (Q9Y3R5) Protein C21orf5 29 9.5

>EUTC_PSEAE (Q9HX02) Ethanolamine ammonia-lyase light chain (EC 4.3.1.7)|
           (Ethanolamine ammonia-lyase small subunit)
          Length = 273

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 275 FSWSPTMHHLSLVNIYRRHAVLIRLMNLSYSMLCHMLLN*GKGVCLYRL 421
           F+W+P    + L + YR     +RL  LSY M  H LL   +  C  +L
Sbjct: 199 FTWAP---RVGLTDAYRNCISNVRLEGLSYGMAAHRLLYLMREACRRQL 244



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>DYHC_ANTCR (P39057) Dynein beta chain, ciliary|
          Length = 4466

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +2

Query: 2    EARRAYLSIHCHFTTGIS----VTA*LWP**FQISLEIWSTY 115
            EA +A  +IHCHF TGI     +    WP   +I +E   TY
Sbjct: 2727 EALKAKPNIHCHFATGIGDPKYMPCATWPELNKILVEALDTY 2768



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>CU005_HUMAN (Q9Y3R5) Protein C21orf5|
          Length = 2298

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +2

Query: 296  HHLSLVNIYRRHAVLIRLMNLSYSMLCHMLLN*GKGVCLYRL--MAPIW 436
            HH++ V ++ R   L    N+   ++CH LL+  KG  L  L   + IW
Sbjct: 891  HHVTCVELFYRLHCLAPTANICEDIICHALLDPDKGTRLEALFRFSVIW 939


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,059,670
Number of Sequences: 219361
Number of extensions: 1826390
Number of successful extensions: 4433
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4328
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5481822624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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