ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9h02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK102430.1| Oryza sativa (japonica cultivar-group) cDNA clon... 349 8e-93
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 188 2e-44
3dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic D... 188 2e-44
4dbj|AP003728.3| Oryza sativa (japonica cultivar-group) genomic D... 188 2e-44
5gb|AC008035.12| Homo sapiens 12 BAC RP11-446N19 (Roswell Park Ca... 44 0.61
6gb|AC097492.6| Homo sapiens BAC clone RP11-264A4 from 4, complet... 42 2.4
7gb|AC156644.2| Pan troglodytes BAC clone CH251-301K8 from chromo... 42 2.4
8gb|AC158400.3| Pan troglodytes BAC clone CH251-530D15 from chrom... 42 2.4
9gb|AC157763.2| Pan troglodytes BAC clone CH251-340C15 from chrom... 42 2.4
10emb|AL670114.17| Mouse DNA sequence from clone RP23-7C19 on chro... 42 2.4
11gb|BC083906.1| Rattus norvegicus cDNA clone MGC:95268 IMAGE:7133... 40 9.5
12gb|AC115948.12| Mus musculus chromosome 16, clone RP24-568J12, c... 40 9.5
13ref|XM_749409.1| Aspergillus fumigatus Af293 hypothetical protei... 40 9.5
14gb|AC140033.3| Medicago truncatula clone mth2-24f11, complete se... 40 9.5
15gb|AC140025.7| Medicago truncatula clone mth2-11i16, complete se... 40 9.5
16emb|AL356358.19| Human DNA sequence from clone RP11-383C12 on ch... 40 9.5
17emb|AL035541.15|HS718J7 Human DNA sequence from clone RP4-718J7 ... 40 9.5
18ref|XM_791142.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 9.5
19gb|AC103784.2| Homo sapiens chromosome 8, clone RP11-715C17, com... 40 9.5
20gb|AC023405.6| Homo sapiens chromosome 8, clone RP11-199K17, com... 40 9.5
21ref|NM_001035001.1| Rattus norvegicus transmembrane protein 69 (... 40 9.5
22gb|DP000036.1| Papio anubis target 106 genomic scaffold 40 9.5
23gb|DP000048.1| Cercopithecus aethiops target 106 genomic scaffold 40 9.5
24dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
25gb|AC106041.3| Homo sapiens BAC clone RP11-3M2 from 4, complete ... 40 9.5
26dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.5
27gb|U80766.1|HSU80766 Human EST clone 22453 mariner transposon Hs... 40 9.5
28emb|AL844609.6| Mouse DNA sequence from clone RP23-356F8 on chro... 40 9.5 
>dbj|AK102430.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093H13, full
            insert sequence
          Length = 2402

 Score =  349 bits (176), Expect = 8e-93
 Identities = 388/458 (84%), Gaps = 3/458 (0%)
 Strand = Plus / Minus

                                                                        
Query: 240  gtttgaagaagagtatggcgtcccagaactcctccacgttgacgtttttctttcggcact 299
            |||||||||| |||||||| |||||||| ||||||||||| |  |||||||| ||||| |
Sbjct: 2057 gtttgaagaacagtatggcatcccagaattcctccacgttaatatttttcttccggcatt 1998

                                                                        
Query: 300  cctcgaaggcttcacaccgttcgactttgtgcgaaaacggagatgagcatatataccgtg 359
            | || || ||||||||   ||| ||| | || || || ||||||| ||| || ||||| |
Sbjct: 1997 cttcaaaagcttcacatgcttcaactctatgtgagaatggagatgggcagatgtaccggg 1938

                                                                        
Query: 360  ttgtgtcgatcgggtgagctccgatctcgttgaaagataaatctaacgctttcaaagaaa 419
            |||||||||| ||||||| ||| ||||||||| |||||||||| |   ||||||||||||
Sbjct: 1937 ttgtgtcgattgggtgagttccaatctcgttgcaagataaatccagtactttcaaagaaa 1878

                                                                        
Query: 420  t---cttcgtcaggggttcgagtgacgtgaaactgctgagctggttattgctgatgttca 476
            |   |||||| || ||||| ||||  |||||||| |||| |||||| |||| || |||||
Sbjct: 1877 ttatcttcgtgagtggttcaagtgctgtgaaactactgatctggttgttgccgaggttca 1818

                                                                        
Query: 477  ggcacacaagctgctgcaaggcctccaaaccttcaattgatctgagcttgttatggctta 536
             ||| |||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||
Sbjct: 1817 agcatacaagctgctgcaaagcctccaaaccttcaatcgatctgaggttgttgtggctta 1758

                                                                        
Query: 537  ggtccagcatttgaacccacaacatgcgttcagtaaatccaatgcgtgttaaagacaatc 596
            ||||||||||||| |||||||||| |||||||| ||||||||| || |||||||| ||||
Sbjct: 1757 ggtccagcatttggacccacaacaagcgttcagcaaatccaatacgcgttaaagataatc 1698

                                                                        
Query: 597  tgcaaagttgcacatggtttaatggagctgaatttgatctaacttggactgaacagtact 656
            ||||||| || |||||||||||||||||| | |||| |  | ||| |||||||||||| |
Sbjct: 1697 tgcaaagctgaacatggtttaatggagctaactttggtagagctttgactgaacagtatt 1638

                                                  
Query: 657  tcatgaaagccttcatgtcacatgttagctgatccatt 694
            || ||||||||| |||||||||||||| ||||||||||
Sbjct: 1637 tcttgaaagcctccatgtcacatgttaactgatccatt 1600
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  188 bits (95), Expect = 2e-44
 Identities = 158/179 (88%)
 Strand = Plus / Minus

                                                                            
Query: 505      accttcaattgatctgagcttgttatggcttaggtccagcatttgaacccacaacatgcg 564
                ||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||| |||
Sbjct: 27763942 accttcaatcgatctgaggttgttgtggcttaggtccagcatttggacccacaacaagcg 27763883

                                                                            
Query: 565      ttcagtaaatccaatgcgtgttaaagacaatctgcaaagttgcacatggtttaatggagc 624
                ||||| ||||||||| || |||||||| ||||||||||| || |||||||||||||||||
Sbjct: 27763882 ttcagcaaatccaatacgcgttaaagataatctgcaaagctgaacatggtttaatggagc 27763823

                                                                           
Query: 625      tgaatttgatctaacttggactgaacagtacttcatgaaagccttcatgtcacatgtta 683
                | | |||| |  | ||| |||||||||||| ||| ||||||||| ||||||||||||||
Sbjct: 27763822 taactttggtagagctttgactgaacagtatttcttgaaagcctccatgtcacatgtta 27763764



 Score =  155 bits (78), Expect = 2e-34
 Identities = 224/272 (82%), Gaps = 3/272 (1%)
 Strand = Plus / Minus

                                                                            
Query: 240      gtttgaagaagagtatggcgtcccagaactcctccacgttgacgtttttctttcggcact 299
                |||||||||| |||||||| |||||||| ||||||||||| |  |||||||| ||||| |
Sbjct: 27764375 gtttgaagaacagtatggcatcccagaattcctccacgttaatatttttcttccggcatt 27764316

                                                                            
Query: 300      cctcgaaggcttcacaccgttcgactttgtgcgaaaacggagatgagcatatataccgtg 359
                | || || ||||||||   ||| ||| | || || || ||||||| ||| || ||||| |
Sbjct: 27764315 cttcaaaagcttcacatgcttcaactctatgtgagaatggagatgggcagatgtaccggg 27764256

                                                                            
Query: 360      ttgtgtcgatcgggtgagctccgatctcgttgaaagataaatctaacgctttcaaagaaa 419
                |||||||||| ||||||| ||| ||||||||| |||||||||| |   ||||||||||||
Sbjct: 27764255 ttgtgtcgattgggtgagttccaatctcgttgcaagataaatccagtactttcaaagaaa 27764196

                                                                            
Query: 420      t---cttcgtcaggggttcgagtgacgtgaaactgctgagctggttattgctgatgttca 476
                |   |||||| || ||||| ||||  |||||||| |||| |||||| |||| || |||||
Sbjct: 27764195 ttatcttcgtgagtggttcaagtgctgtgaaactactgatctggttgttgccgaggttca 27764136

                                                
Query: 477      ggcacacaagctgctgcaaggcctccaaacct 508
                 ||| |||||||||||||| ||||||||||||
Sbjct: 27764135 agcatacaagctgctgcaaagcctccaaacct 27764104
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>dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1153E06
          Length = 174588

 Score =  188 bits (95), Expect = 2e-44
 Identities = 158/179 (88%)
 Strand = Plus / Minus

                                                                          
Query: 505    accttcaattgatctgagcttgttatggcttaggtccagcatttgaacccacaacatgcg 564
              ||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||| |||
Sbjct: 113197 accttcaatcgatctgaggttgttgtggcttaggtccagcatttggacccacaacaagcg 113138

                                                                          
Query: 565    ttcagtaaatccaatgcgtgttaaagacaatctgcaaagttgcacatggtttaatggagc 624
              ||||| ||||||||| || |||||||| ||||||||||| || |||||||||||||||||
Sbjct: 113137 ttcagcaaatccaatacgcgttaaagataatctgcaaagctgaacatggtttaatggagc 113078

                                                                         
Query: 625    tgaatttgatctaacttggactgaacagtacttcatgaaagccttcatgtcacatgtta 683
              | | |||| |  | ||| |||||||||||| ||| ||||||||| ||||||||||||||
Sbjct: 113077 taactttggtagagctttgactgaacagtatttcttgaaagcctccatgtcacatgtta 113019



 Score =  155 bits (78), Expect = 2e-34
 Identities = 224/272 (82%), Gaps = 3/272 (1%)
 Strand = Plus / Minus

                                                                          
Query: 240    gtttgaagaagagtatggcgtcccagaactcctccacgttgacgtttttctttcggcact 299
              |||||||||| |||||||| |||||||| ||||||||||| |  |||||||| ||||| |
Sbjct: 113630 gtttgaagaacagtatggcatcccagaattcctccacgttaatatttttcttccggcatt 113571

                                                                          
Query: 300    cctcgaaggcttcacaccgttcgactttgtgcgaaaacggagatgagcatatataccgtg 359
              | || || ||||||||   ||| ||| | || || || ||||||| ||| || ||||| |
Sbjct: 113570 cttcaaaagcttcacatgcttcaactctatgtgagaatggagatgggcagatgtaccggg 113511

                                                                          
Query: 360    ttgtgtcgatcgggtgagctccgatctcgttgaaagataaatctaacgctttcaaagaaa 419
              |||||||||| ||||||| ||| ||||||||| |||||||||| |   ||||||||||||
Sbjct: 113510 ttgtgtcgattgggtgagttccaatctcgttgcaagataaatccagtactttcaaagaaa 113451

                                                                          
Query: 420    t---cttcgtcaggggttcgagtgacgtgaaactgctgagctggttattgctgatgttca 476
              |   |||||| || ||||| ||||  |||||||| |||| |||||| |||| || |||||
Sbjct: 113450 ttatcttcgtgagtggttcaagtgctgtgaaactactgatctggttgttgccgaggttca 113391

                                              
Query: 477    ggcacacaagctgctgcaaggcctccaaacct 508
               ||| |||||||||||||| ||||||||||||
Sbjct: 113390 agcatacaagctgctgcaaagcctccaaacct 113359
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>dbj|AP003728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0710B08
          Length = 186991

 Score =  188 bits (95), Expect = 2e-44
 Identities = 158/179 (88%)
 Strand = Plus / Minus

                                                                         
Query: 505   accttcaattgatctgagcttgttatggcttaggtccagcatttgaacccacaacatgcg 564
             ||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||| |||
Sbjct: 66451 accttcaatcgatctgaggttgttgtggcttaggtccagcatttggacccacaacaagcg 66392

                                                                         
Query: 565   ttcagtaaatccaatgcgtgttaaagacaatctgcaaagttgcacatggtttaatggagc 624
             ||||| ||||||||| || |||||||| ||||||||||| || |||||||||||||||||
Sbjct: 66391 ttcagcaaatccaatacgcgttaaagataatctgcaaagctgaacatggtttaatggagc 66332

                                                                        
Query: 625   tgaatttgatctaacttggactgaacagtacttcatgaaagccttcatgtcacatgtta 683
             | | |||| |  | ||| |||||||||||| ||| ||||||||| ||||||||||||||
Sbjct: 66331 taactttggtagagctttgactgaacagtatttcttgaaagcctccatgtcacatgtta 66273



 Score =  155 bits (78), Expect = 2e-34
 Identities = 224/272 (82%), Gaps = 3/272 (1%)
 Strand = Plus / Minus

                                                                         
Query: 240   gtttgaagaagagtatggcgtcccagaactcctccacgttgacgtttttctttcggcact 299
             |||||||||| |||||||| |||||||| ||||||||||| |  |||||||| ||||| |
Sbjct: 66884 gtttgaagaacagtatggcatcccagaattcctccacgttaatatttttcttccggcatt 66825

                                                                         
Query: 300   cctcgaaggcttcacaccgttcgactttgtgcgaaaacggagatgagcatatataccgtg 359
             | || || ||||||||   ||| ||| | || || || ||||||| ||| || ||||| |
Sbjct: 66824 cttcaaaagcttcacatgcttcaactctatgtgagaatggagatgggcagatgtaccggg 66765

                                                                         
Query: 360   ttgtgtcgatcgggtgagctccgatctcgttgaaagataaatctaacgctttcaaagaaa 419
             |||||||||| ||||||| ||| ||||||||| |||||||||| |   ||||||||||||
Sbjct: 66764 ttgtgtcgattgggtgagttccaatctcgttgcaagataaatccagtactttcaaagaaa 66705

                                                                         
Query: 420   t---cttcgtcaggggttcgagtgacgtgaaactgctgagctggttattgctgatgttca 476
             |   |||||| || ||||| ||||  |||||||| |||| |||||| |||| || |||||
Sbjct: 66704 ttatcttcgtgagtggttcaagtgctgtgaaactactgatctggttgttgccgaggttca 66645

                                             
Query: 477   ggcacacaagctgctgcaaggcctccaaacct 508
              ||| |||||||||||||| ||||||||||||
Sbjct: 66644 agcatacaagctgctgcaaagcctccaaacct 66613
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>gb|AC008035.12| Homo sapiens 12 BAC RP11-446N19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 104000

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 585   ttaaagacaatctgcaaagttg 606
             ||||||||||||||||||||||
Sbjct: 82521 ttaaagacaatctgcaaagttg 82500
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>gb|AC097492.6| Homo sapiens BAC clone RP11-264A4 from 4, complete sequence
          Length = 142890

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 474   tcaggcacacaagctgctgca 494
             |||||||||||||||||||||
Sbjct: 11042 tcaggcacacaagctgctgca 11062
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>gb|AC156644.2| Pan troglodytes BAC clone CH251-301K8 from chromosome unknown, complete
             sequence
          Length = 165832

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 474   tcaggcacacaagctgctgca 494
             |||||||||||||||||||||
Sbjct: 82837 tcaggcacacaagctgctgca 82857
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>gb|AC158400.3| Pan troglodytes BAC clone CH251-530D15 from chromosome unknown,
             complete sequence
          Length = 205243

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 474   tcaggcacacaagctgctgca 494
             |||||||||||||||||||||
Sbjct: 23011 tcaggcacacaagctgctgca 23031
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>gb|AC157763.2| Pan troglodytes BAC clone CH251-340C15 from chromosome unknown,
             complete sequence
          Length = 198239

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 474   tcaggcacacaagctgctgca 494
             |||||||||||||||||||||
Sbjct: 39500 tcaggcacacaagctgctgca 39480
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>emb|AL670114.17| Mouse DNA sequence from clone RP23-7C19 on chromosome X, complete
             sequence
          Length = 128978

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 644   actgaacagtacttcatgaaa 664
             |||||||||||||||||||||
Sbjct: 45736 actgaacagtacttcatgaaa 45716
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>gb|BC083906.1| Rattus norvegicus cDNA clone MGC:95268 IMAGE:7133962, complete cds
          Length = 2174

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 31  aactgtaataatacatgaatcaga 54
           |||||||| |||||||||||||||
Sbjct: 279 aactgtaaaaatacatgaatcaga 302
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>gb|AC115948.12| Mus musculus chromosome 16, clone RP24-568J12, complete sequence
          Length = 212604

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 495   aggcctccaaaccttcaatt 514
             ||||||||||||||||||||
Sbjct: 94793 aggcctccaaaccttcaatt 94812
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>ref|XM_749409.1| Aspergillus fumigatus Af293 hypothetical protein (Afu3g11170)
           partial mRNA
          Length = 1944

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 322 gactttgtgcgaaaacggagatga 345
           |||||||||| |||||||||||||
Sbjct: 875 gactttgtgccaaaacggagatga 898
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>gb|AC140033.3| Medicago truncatula clone mth2-24f11, complete sequence
          Length = 120384

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 600   aaagttgcacatggtttaat 619
             ||||||||||||||||||||
Sbjct: 73053 aaagttgcacatggtttaat 73034
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>gb|AC140025.7| Medicago truncatula clone mth2-11i16, complete sequence
          Length = 130592

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 600   aaagttgcacatggtttaat 619
             ||||||||||||||||||||
Sbjct: 22506 aaagttgcacatggtttaat 22487
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>emb|AL356358.19| Human DNA sequence from clone RP11-383C12 on chromosome Xq11.1-13.1
             Contains the 3' end of the AR gene for androgen receptor
             (dihydrotestosterone receptor; testicular feminization;
             spinal and bulbar muscular atrophy; Kennedy disease) and a
             B lymphoma Mo-MLV insertion region (mouse) (BMI1)
             pseudogene, complete sequence
          Length = 161417

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   gggtttgaagaagagtatgg 257
             ||||||||||||||||||||
Sbjct: 83022 gggtttgaagaagagtatgg 83041
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>emb|AL035541.15|HS718J7 Human DNA sequence from clone RP4-718J7 on chromosome 20q13.31-13.33
             Contains the PCK1 gene for soluble phosphoenolpyruvate
             carboxykinase 1, the ZBP1 gene for Z-DNA binding protein
             1, the 3' end of the TMEPAI gene for transmembrane
             prostate androgen induced mRNA, two putative novel genes,
             the 5' end of the CTCFL gene for CCCTC-binding factor
             (zinc finger)-like and a CpG island, complete sequence
          Length = 130435

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   cttcagagaagggctgagtg 164
             ||||||||||||||||||||
Sbjct: 19134 cttcagagaagggctgagtg 19115
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>ref|XM_791142.1| PREDICTED: Strongylocentrotus purpuratus similar to CG9256-PA,
           isoform A (LOC591586), partial mRNA
          Length = 2260

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 378 ctccgatctcgttgaaagat 397
           ||||||||||||||||||||
Sbjct: 733 ctccgatctcgttgaaagat 714
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>gb|AC103784.2| Homo sapiens chromosome 8, clone RP11-715C17, complete sequence
          Length = 175745

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      taattgtattagtctctcag 22
              ||||||||||||||||||||
Sbjct: 110561 taattgtattagtctctcag 110542
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>gb|AC023405.6| Homo sapiens chromosome 8, clone RP11-199K17, complete sequence
          Length = 151859

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     taattgtattagtctctcag 22
             ||||||||||||||||||||
Sbjct: 21025 taattgtattagtctctcag 21044
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>ref|NM_001035001.1| Rattus norvegicus transmembrane protein 69 (Tmem69), mRNA
          Length = 2174

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 31  aactgtaataatacatgaatcaga 54
           |||||||| |||||||||||||||
Sbjct: 279 aactgtaaaaatacatgaatcaga 302
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>gb|DP000036.1| Papio anubis target 106 genomic scaffold
          Length = 492848

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 475    caggcacacaagctgctgca 494
              ||||||||||||||||||||
Sbjct: 432326 caggcacacaagctgctgca 432307
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>gb|DP000048.1| Cercopithecus aethiops target 106 genomic scaffold
          Length = 583711

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 475    caggcacacaagctgctgca 494
              ||||||||||||||||||||
Sbjct: 547605 caggcacacaagctgctgca 547586
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 258      cgtcccagaactcctccacg 277
                ||||||||||||||||||||
Sbjct: 31979085 cgtcccagaactcctccacg 31979104
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>gb|AC106041.3| Homo sapiens BAC clone RP11-3M2 from 4, complete sequence
          Length = 22638

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 614   tttaatggagctgaatttga 633
             ||||||||||||||||||||
Sbjct: 20588 tttaatggagctgaatttga 20607
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>dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0471A11
          Length = 157740

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 258    cgtcccagaactcctccacg 277
              ||||||||||||||||||||
Sbjct: 140086 cgtcccagaactcctccacg 140105
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>gb|U80766.1|HSU80766 Human EST clone 22453 mariner transposon Hsmar1 sequence
          Length = 1576

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 3    taattgtattagtctctcag 22
            ||||||||||||||||||||
Sbjct: 1154 taattgtattagtctctcag 1135
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>emb|AL844609.6| Mouse DNA sequence from clone RP23-356F8 on chromosome 4, complete
             sequence
          Length = 191676

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   cttcagagaagggctgagtg 164
             ||||||||||||||||||||
Sbjct: 21159 cttcagagaagggctgagtg 21140


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,371,700
Number of Sequences: 3902068
Number of extensions: 5371700
Number of successful extensions: 92013
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91891
Number of HSP's gapped (non-prelim): 114
length of query: 694
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 671
effective length of database: 17,143,297,704
effective search space: 11503152759384
effective search space used: 11503152759384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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