ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags9h01 |
|---|---|
| Clone Library Name | barley_pub |
>CCDC4_HUMAN (Q6ZU67) Coiled-coil domain-containing protein 4| Length = 530 Score = 32.7 bits (73), Expect = 0.80 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 10/123 (8%) Frame = +3 Query: 78 LQTAQKQSYYTSIESS*PKKQERRRTKHIEKGLYSQTQIN----------QQPYSIFTSL 227 L + QS + ++ ER+ HI KG++SQT N +Q S F + Sbjct: 185 LDSNHSQSMISCVKQEGSSYNERQEHCHIGKGVHSQTSDNVDIEMQYMQRKQQTSAFLRV 244 Query: 228 NHT*HLYIFLSSNTLPIKPNPRSKDSTGHRSLFNSSYSTPQQSSACYTGITSMSEVSSHL 407 T L +L S + P PNP S GH + + ++P + +T + SE H Sbjct: 245 -FTDSLQNYLLSGSFP-TPNPSSASEYGHLADVDPLSTSPVHTLGGWTS-PATSESHGHP 301 Query: 408 TTS 416 ++S Sbjct: 302 SSS 304
>COPA_HELPY (P55989) Copper-transporting ATPase (EC 3.6.3.4)| Length = 745 Score = 32.3 bits (72), Expect = 1.0 Identities = 31/123 (25%), Positives = 49/123 (39%) Frame = +1 Query: 127 NRKNRSEGGQNTLKKDYTAKHRLTSSHTPSLLALITPNICTFFSVLILYQSNPTRGQKIR 306 N+ N E + K Y+ K LT + + F++ ++Y S G + Sbjct: 48 NQTNLDEIFKLIEKLGYSPKKALTKEKKEFFSPNVKLALAVIFTLFVVYLS---MGAMLS 104 Query: 307 QAIVPSSTAAIPHHSNHQLAILVSHPCLKYLHISQPVHRGSLGRNKYPTGNQMRWALMEV 486 +++P S AI +HSN A L L +H LGR+ Y G + W Sbjct: 105 PSLLPESLLAIDNHSNFLNACLQLIGALIVMH---------LGRDFYIQGFKALWHRQPN 155 Query: 487 LSS 495 +SS Sbjct: 156 MSS 158
>R13L1_ARATH (Q9LRR4) Putative disease resistance RPP13-like protein 1| Length = 1054 Score = 31.6 bits (70), Expect = 1.8 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 5/71 (7%) Frame = +1 Query: 382 PCLKYLHISQPVHRGSLGRNKYPTGNQMRWALMEVLSSTRSHSFEQHPSHSQ-----CCL 546 PCLK LHIS V S+GR Y + Q+R + S + F+ P + Sbjct: 813 PCLKELHISGMVGLQSIGRKFYFSDQQLRDQDQQPFRSLETLRFDNLPDWQEWLDVRVTR 872 Query: 547 PLMYPSFRRIF 579 ++PS +++F Sbjct: 873 GDLFPSLKKLF 883
>HXB4_CHICK (P14840) Homeobox protein Hox-B4 (Chox-Z)| Length = 245 Score = 31.2 bits (69), Expect = 2.3 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 5/81 (6%) Frame = +1 Query: 349 SNHQLAIL-----VSHPCLKYLHISQPVHRGSLGRNKYPTGNQMRWALMEVLSSTRSHSF 513 S HQ A+L V P H+S+P H G P S +S Sbjct: 69 SGHQAAVLSPRGHVHPPAGLQSHLSEPNHPCEPGTPSPPP-------------SCSQNSL 115 Query: 514 EQHPSHSQCCLPLMYPSFRRI 576 Q PS+S C P++YP +++ Sbjct: 116 NQSPSNSSCKEPVVYPWMKKV 136
>COPA_HELPJ (Q9ZM69) Copper-transporting ATPase (EC 3.6.3.4)| Length = 745 Score = 30.8 bits (68), Expect = 3.0 Identities = 30/123 (24%), Positives = 46/123 (37%) Frame = +1 Query: 127 NRKNRSEGGQNTLKKDYTAKHRLTSSHTPSLLALITPNICTFFSVLILYQSNPTRGQKIR 306 N N E + K Y+ K L + + F++ ++Y S G + Sbjct: 48 NETNLDEIFKLIEKLGYSPKKTLAEEKKEFFSPNVKLALAVIFTLFVVYLS---MGAMLS 104 Query: 307 QAIVPSSTAAIPHHSNHQLAILVSHPCLKYLHISQPVHRGSLGRNKYPTGNQMRWALMEV 486 +++P S I HHSN A L L +H LGR+ Y G + W Sbjct: 105 PSLLPESLLTINHHSNFLNACLQLIGALIVMH---------LGRDFYIQGFKALWHRQPN 155 Query: 487 LSS 495 +SS Sbjct: 156 MSS 158
>ADA1A_RABIT (O02824) Alpha-1A adrenergic receptor (Alpha 1A-adrenoceptor)| (Alpha 1A-adrenoreceptor) (Alpha-1C adrenergic receptor) Length = 466 Score = 30.8 bits (68), Expect = 3.0 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = -3 Query: 263 RTEKNVQMLGVIKASKDGVWLLVNLCLAV*SFFNVFCPPSLLF---FRL*ALNTCVI*LL 93 R +K + LG++ WL L + + SFF F PP +F F L LN+C+ ++ Sbjct: 266 REKKAAKTLGIVVGCFVLCWLPFFLVMPIGSFFPDFKPPETVFKIVFWLGYLNSCINPII 325 Query: 92 LGC 84 C Sbjct: 326 YPC 328
>ADA1A_MOUSE (P97718) Alpha-1A adrenergic receptor (Alpha 1A-adrenoceptor)| (Alpha 1A-adrenoreceptor) (Alpha-1C adrenergic receptor) Length = 466 Score = 30.8 bits (68), Expect = 3.0 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Frame = -3 Query: 263 RTEKNVQMLGVIKASKDGVWLLVNLCLAV*SFFNVFCPPSLLF---FRL*ALNTCVI*LL 93 R +K + LG++ WL L + + SFF F PP +F F L LN+C+ ++ Sbjct: 266 REKKAAKTLGIVVGCFVLCWLPFFLVMPIGSFFPNFKPPETVFKIVFWLGYLNSCINPII 325 Query: 92 LGC 84 C Sbjct: 326 YPC 328
>ADCY7_HUMAN (P51828) Adenylate cyclase type 7 (EC 4.6.1.1) (Adenylate cyclase| type VII) (ATP pyrophosphate-lyase 7) (Adenylyl cyclase 7) Length = 1080 Score = 30.0 bits (66), Expect = 5.2 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Frame = +1 Query: 121 AHNRKNRSEGGQNTLKKDYTAKHRLTSSHTPSLLA--LITPNICTFFSVLILYQSNPTRG 294 A R +EG + + K++LTS H P LL L+ C ++ Q +P+R Sbjct: 3 AKGRYFLNEGEEGPDQDALYEKYQLTSQHGPLLLTLLLVAATACVALIIIAFSQGDPSRH 62 Query: 295 QKI 303 Q I Sbjct: 63 QAI 65
>COPA3_HELPY (O08462) Copper-transporting ATPase (EC 3.6.3.4)| Length = 745 Score = 29.6 bits (65), Expect = 6.7 Identities = 30/123 (24%), Positives = 47/123 (38%) Frame = +1 Query: 127 NRKNRSEGGQNTLKKDYTAKHRLTSSHTPSLLALITPNICTFFSVLILYQSNPTRGQKIR 306 N N E + K Y+ K L + + F++ ++Y S G + Sbjct: 48 NETNLDEIFKLIEKLGYSPKKTLAEEKKEFFSPNVKLALAVIFTLFVVYLS---MGAMLS 104 Query: 307 QAIVPSSTAAIPHHSNHQLAILVSHPCLKYLHISQPVHRGSLGRNKYPTGNQMRWALMEV 486 +++P S AI +HSN A L L +H LGR+ Y G + W Sbjct: 105 PSLLPESLLAINNHSNFLNACLQLIGALIVMH---------LGRDFYIQGFKALWHRQPN 155 Query: 487 LSS 495 +SS Sbjct: 156 MSS 158
>KCNQ1_SQUAC (O73925) Potassium voltage-gated channel subfamily KQT member 1| (Voltage-gated potassium channel subunit Kv7.1) (IKs producing slow voltage-gated potassium channel alpha subunit KvLQT1) (KQT-like 1) Length = 660 Score = 29.6 bits (65), Expect = 6.7 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Frame = +3 Query: 132 KKQERRRTKHIEKGLYSQTQINQQPYSIFTSLNH---T*HLYIFLSSNTLPIKPNPRSKD 302 K Q+++R KH + + + + Q + + NH T +Y+ + P+P++K Sbjct: 347 KVQQKQRQKHFNRQIPAAASLIQTSWRCHAAENHESATWKMYVRQPTKFYVASPSPKTKK 406 Query: 303 STGHR 317 S G R Sbjct: 407 SVGKR 411
>YEY8_YEAST (P40095) Hypothetical 63.7 kDa protein in BEM2-NCB1 intergenic| region Length = 573 Score = 29.3 bits (64), Expect = 8.8 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 7/67 (10%) Frame = +3 Query: 264 NTLPIKPNPRSKDST----GHRSLFNSSYSTPQQSSACYTGITS---MSEVSSHLTTSPS 422 N LP+ + S ST + S NSS S+P SS+ + + S M +SS T +PS Sbjct: 417 NKLPLTASVPSSLSTTTDAANSSFINSSISSPAPSSSSSSSLVSRGPMQSISSSPTPAPS 476 Query: 423 RFAGKKQ 443 + K + Sbjct: 477 SGSSKSK 483
>ENAM_MOUSE (O55196) Enamelin precursor| Length = 1274 Score = 29.3 bits (64), Expect = 8.8 Identities = 33/116 (28%), Positives = 43/116 (37%), Gaps = 1/116 (0%) Frame = +3 Query: 57 HKPDSTSLQTAQKQSYYTSIESS*PKKQERRRTKHIEKGLYSQTQINQQPYSIFTSLNHT 236 HK + +LQ YTS P+K + H E + N P SI S + Sbjct: 1014 HKDNVLALQD------YTSSYGLPPRKNQETSPVHTESSYIKYARPNVSPASILPSQRN- 1066 Query: 237 *HLYIFLSSNTLPIK-PNPRSKDSTGHRSLFNSSYSTPQQSSACYTGITSMSEVSS 401 +S N L + PNP N+ YS Q TGI + SE SS Sbjct: 1067 ------ISENKLTAESPNPSPFGDGVPTVRKNTPYSGKNQLE---TGIVAFSEASS 1113
>ADCY7_BOVIN (Q29450) Adenylate cyclase type 7 (EC 4.6.1.1) (Adenylate cyclase| type VII) (ATP pyrophosphate-lyase 7) (Adenylyl cyclase 7) Length = 1078 Score = 29.3 bits (64), Expect = 8.8 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Frame = +1 Query: 121 AHNRKNRSEGGQNTLKKDYTAKHRLTSSHTPSLLALITPNI--CTFFSVLILYQSNPTRG 294 A R +EG + + K+RLTS H P LL L+ I CT V+ +P+R Sbjct: 3 AKGRYFLNEGEEGPDQDALYEKYRLTSQHGPLLLMLLLVAIAACTTLIVITFSYGDPSRH 62 Query: 295 QKI 303 + + Sbjct: 63 RAV 65
>PAXA_PASAE (Q9RCG8) Exotoxin paxA| Length = 1049 Score = 29.3 bits (64), Expect = 8.8 Identities = 20/73 (27%), Positives = 32/73 (43%) Frame = +1 Query: 58 INPIQQVFKQPKSNHITQVLRAHNRKNRSEGGQNTLKKDYTAKHRLTSSHTPSLLALITP 237 I+ I + KQP H+ L + + G+N + Y A+H+ + SLL+ Sbjct: 413 ISGILEFSKQPMLEHVASKLGTKIEEWERKYGKNYFENGYDARHKAFLEDSLSLLSSFNK 472 Query: 238 NICTFFSVLILYQ 276 T +VLI Q Sbjct: 473 QYETERAVLITQQ 485 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,148,698 Number of Sequences: 219361 Number of extensions: 1952808 Number of successful extensions: 5009 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4793 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5004 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
