ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9h01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY146587.1| Triticum turgidum subsp. durum BAC 107G22, comple... 557 e-155
2ref|XM_473807.1| Oryza sativa (japonica cultivar-group), predic... 170 3e-39
3dbj|AK068251.1| Oryza sativa (japonica cultivar-group) cDNA clon... 170 3e-39
4gb|AY106118.1| Zea mays PCO078446 mRNA sequence 143 7e-31
5emb|AL662968.3|OSJN00168 Oryza sativa genomic DNA, chromosome 4,... 133 7e-28
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 133 7e-28
7gb|AY596559.1| Saccharum officinarum clone SCVPLB1018C01, comple... 127 4e-26
8ref|XM_480815.1| Oryza sativa (japonica cultivar-group), mRNA 115 2e-22
9ref|XM_507171.1| PREDICTED Oryza sativa (japonica cultivar-group... 115 2e-22
10dbj|AK069639.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 2e-22
11dbj|AK060252.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 2e-22
12gb|BT017922.1| Zea mays clone EL01N0519C02.c mRNA sequence 98 4e-17
13dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
14dbj|AP004559.2| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
15dbj|AP005410.3| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
16ref|NM_118355.1| Arabidopsis thaliana cysteine-type endopeptidas... 44 0.51
17emb|AJ833968.1| Zea mays partial mRNA for hypothetical protein (... 44 0.51
18gb|AY140104.1| Arabidopsis thaliana unknown protein mRNA, comple... 44 0.51
19gb|BT006592.1| Arabidopsis thaliana At4g22290 mRNA, complete cds 44 0.51
20emb|BX827002.1|CNS0A4AI Arabidopsis thaliana Full-length cDNA Co... 44 0.51
21emb|BX827259.1|CNS0A2E0 Arabidopsis thaliana Full-length cDNA Co... 44 0.51
22emb|CT573215.2| Medicago truncatula chromosome 5 clone mth2-51h2... 44 0.51
23gb|AF207550.3| Homo sapiens chromosome X multiple clones map p11... 42 2.0
24gb|AC102229.7| Mus musculus chromosome 15, clone RP24-70F9, comp... 42 2.0
25gb|AC136611.2| Homo sapiens chromosome 16 clone RP11-159J3, comp... 42 2.0
26gb|AC009030.10| Homo sapiens chromosome 16 clone RP11-13G6, comp... 42 2.0
27gb|AC148226.7| Medicago truncatula clone mth2-5i20, complete seq... 42 2.0
28gb|AC008055.7| Homo sapiens 12 BAC RP11-718L23 (Roswell Park Can... 42 2.0
29dbj|AB042425.1| Homo sapiens Pim-2h, hUGT2, hUGT1, genes for pim... 42 2.0
30gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete... 40 8.0
31gb|AC164170.7| Mus musculus 10 BAC RP24-419C12 (Roswell Park Can... 40 8.0
32gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 8.0
33gb|BT013729.1| Lycopersicon esculentum clone 132589F, mRNA sequence 40 8.0
34gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.0
35gb|AC124757.4| Mus musculus BAC clone RP23-116P5 from 8, complet... 40 8.0
36emb|CR391986.5| Zebrafish DNA sequence from clone CH211-195O20 i... 40 8.0
37emb|CR709912.2|CNS0GAPW Tetraodon nigroviridis full-length cDNA 40 8.0
38gb|AC136986.6| Mus musculus chromosome 12, clone RP23-187H12, co... 40 8.0
39emb|BX323802.24| Zebrafish DNA sequence from clone DKEY-104I9 in... 40 8.0
40emb|AL390731.9| Human DNA sequence from clone RP11-506F17 on chr... 40 8.0
41emb|AL353810.9| Human DNA sequence from clone RP11-261H15 on chr... 40 8.0
42emb|BX572093.1| Prochlorococcus marinus MED4 complete genome; se... 40 8.0
43gb|AY158230.1| Mus musculus strain 129/SvJ chromosome 10 clone 1... 40 8.0
44gb|AE014179.1| Mus musculus piebald deletion region section 7 of... 40 8.0
45emb|BX323037.10| Zebrafish DNA sequence from clone DKEYP-8B6 in ... 40 8.0
46gb|AC103691.2| Homo sapiens chromosome 15, clone RP11-959H21, co... 40 8.0
47dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102 40 8.0
48gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome 40 8.0
49ref|XM_689459.1| PREDICTED: Danio rerio similar to ryanodine rec... 40 8.0
50dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
51gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 geno... 40 8.0
52emb|BX088525.4| Zebrafish DNA sequence from clone DKEYP-51F8 in ... 40 8.0
53emb|AL928892.6| Zebrafish DNA sequence from clone DKEY-216E6, co... 40 8.0
54gb|AC111039.13| Mus musculus chromosome 5, clone RP24-463M5, com... 40 8.0
55emb|CT010449.10| Mouse DNA sequence from clone RP23-347O24 on ch... 40 8.0
56gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome 40 8.0
57gb|AC135119.4| Mus musculus BAC clone RP24-535H19 from 14, compl... 40 8.0
58gb|AC171336.3| Mus musculus BAC RP24-286O17 (Roswell Park Cance... 40 8.0 
>gb|AY146587.1| Triticum turgidum subsp. durum BAC 107G22, complete sequence
          Length = 142018

 Score =  557 bits (281), Expect = e-155
 Identities = 311/321 (96%)
 Strand = Plus / Minus

                                                                        
Query: 17   aggctttaacagcggtgcaagaagttcatcctaaataacacataaacccgattcaacaag 76
            ||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||| |
Sbjct: 1473 aggctttaacagcagtgcaagaaattcatcctaaataacacataaactcgattcaacatg 1414

                                                                        
Query: 77   tcttcaaacagcccaaaagcaatcatattacacaagtattgagagctcataaccgaaaaa 136
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1413 tcttcaaacagcccaaaagcaatcatattacacaagtattgagagctcataaccgaaaaa 1354

                                                                        
Query: 137  acaggagcgaaggaggacaaaacacattgaaaaaggactatacagccaaacacagattaa 196
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1353 acaggagcgaaggagaacaaaacacattgaaaaaggactatacagccaaacacagattac 1294

                                                                        
Query: 197  ccagcagccatactccatctttactagccttaatcacacctaacatttgtacatttttct 256
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1293 ccagcagccatactccatctttactagccttaatcacacctagcatttgtacatttttct 1234

                                                                        
Query: 257  cagttctaatactctaccaatcaaacccaacccgaggtcaaaagattcgacaggccatcg 316
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 1233 cagttctaatactctaccaatcaagcccaacccgaggtcaaaagattcgacaggccaacg 1174

                                 
Query: 317  ttccctcttcaacagcagcta 337
            ||| |||||||||||||||||
Sbjct: 1173 ttcactcttcaacagcagcta 1153



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                    
Query: 405  ctcacaaccagtccatcgaggttcgctgggaagaaacaagtaccccactggcaacc 460
            ||||| ||||||||||| || |||||||||||||||||| | ||||||||||||||
Sbjct: 1152 ctcacgaccagtccatcaagtttcgctgggaagaaacaacttccccactggcaacc 1097



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 75   agtcttcaaacagcccaaaag 95
            |||||||||||||||||||||
Sbjct: 1555 agtcttcaaacagcccaaaag 1535
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>ref|XM_473807.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1449

 Score =  170 bits (86), Expect = 3e-39
 Identities = 129/142 (90%), Gaps = 1/142 (0%)
 Strand = Plus / Minus

                                                                        
Query: 448  cccactggcaaccagatgagatgggctctgatggaggtactatcatcaacacgctctcat 507
            |||||||||||||||  ||||||||||||| |||||| || |||||||||||| | ||||
Sbjct: 1366 cccactggcaaccagtagagatgggctctggtggaggaacaatcatcaacacgttgtcat 1307

                                                                        
Query: 508  tcttttgaacaacacccatcacactcacagtgctgccttcctttgatgtatccttctttt 567
            ||||||||||||| |||||||||||||| |||||||||||| || |||||||||||||||
Sbjct: 1306 tcttttgaacaacccccatcacactcacggtgctgccttcc-ttaatgtatccttctttt 1248

                                  
Query: 568  aggcgcattttccgaccatcac 589
            ||||||||| ||||| ||||||
Sbjct: 1247 aggcgcattatccgatcatcac 1226
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>dbj|AK068251.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013145H18, full
            insert sequence
          Length = 2228

 Score =  170 bits (86), Expect = 3e-39
 Identities = 129/142 (90%), Gaps = 1/142 (0%)
 Strand = Plus / Minus

                                                                        
Query: 448  cccactggcaaccagatgagatgggctctgatggaggtactatcatcaacacgctctcat 507
            |||||||||||||||  ||||||||||||| |||||| || |||||||||||| | ||||
Sbjct: 1799 cccactggcaaccagtagagatgggctctggtggaggaacaatcatcaacacgttgtcat 1740

                                                                        
Query: 508  tcttttgaacaacacccatcacactcacagtgctgccttcctttgatgtatccttctttt 567
            ||||||||||||| |||||||||||||| |||||||||||| || |||||||||||||||
Sbjct: 1739 tcttttgaacaacccccatcacactcacggtgctgccttcc-ttaatgtatccttctttt 1681

                                  
Query: 568  aggcgcattttccgaccatcac 589
            ||||||||| ||||| ||||||
Sbjct: 1680 aggcgcattatccgatcatcac 1659



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 216  tttactagccttaatcacacctaacatttgtacatttttctcagttctaa 265
            ||||||| |||||||||  || ||||||||||||||||||||| ||||||
Sbjct: 2016 tttactaaccttaatcatccccaacatttgtacatttttctcaattctaa 1967
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>gb|AY106118.1| Zea mays PCO078446 mRNA sequence
          Length = 988

 Score =  143 bits (72), Expect = 7e-31
 Identities = 175/208 (84%), Gaps = 1/208 (0%)
 Strand = Plus / Minus

                                                                       
Query: 369 actggtatcacatccatgtctgaagtatcttcacatctcacaaccagtccatcgaggttc 428
           |||||||||||||| || | |||||||||||| ||||| | ||| || ||||| ||||| 
Sbjct: 715 actggtatcacatcaatatttgaagtatcttcgcatcttaaaacaagcccatcaaggttg 656

                                                                       
Query: 429 gctgggaagaaacaagtaccccactggcaaccagatgagatgggctctgatggaggtact 488
           | |||||  |  ||  |  ||||||| ||||||| ||||||||||||||||||||| || 
Sbjct: 655 gttgggagaacgcacttggcccactgacaaccagttgagatgggctctgatggaggaaca 596

                                                                       
Query: 489 atcatcaacacgctctcattcttttgaacaacacccatcacactcacagtgctgccttcc 548
           |||||||  ||  | |||||| |||| ||||| |||||||||||||||||||| ||||||
Sbjct: 595 atcatcagaacattgtcattcctttggacaacccccatcacactcacagtgctaccttcc 536

                                       
Query: 549 tttgatgtatccttcttttaggcgcatt 576
            |||||||||||||||||||||||||||
Sbjct: 535 -ttgatgtatccttcttttaggcgcatt 509
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>emb|AL662968.3|OSJN00168 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035M09,
             complete sequence
          Length = 152732

 Score =  133 bits (67), Expect = 7e-28
 Identities = 94/103 (91%)
 Strand = Plus / Plus

                                                                         
Query: 448   cccactggcaaccagatgagatgggctctgatggaggtactatcatcaacacgctctcat 507
             |||||||||||||||  ||||||||||||| |||||| || |||||||||||| | ||||
Sbjct: 80297 cccactggcaaccagtagagatgggctctggtggaggaacaatcatcaacacgttgtcat 80356

                                                        
Query: 508   tcttttgaacaacacccatcacactcacagtgctgccttcctt 550
             ||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 80357 tcttttgaacaacccccatcacactcacggtgctgccttcctt 80399



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                               
Query: 216   tttactagccttaatcacacctaacatttgtacatttttctcagttctaa 265
             ||||||| |||||||||  || ||||||||||||||||||||| ||||||
Sbjct: 80080 tttactaaccttaatcatccccaacatttgtacatttttctcaattctaa 80129



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 559   ccttcttttaggcgcattttccgaccatcac 589
             |||||||||||||||||| ||||| ||||||
Sbjct: 80522 ccttcttttaggcgcattatccgatcatcac 80552
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  133 bits (67), Expect = 7e-28
 Identities = 94/103 (91%)
 Strand = Plus / Plus

                                                                            
Query: 448      cccactggcaaccagatgagatgggctctgatggaggtactatcatcaacacgctctcat 507
                |||||||||||||||  ||||||||||||| |||||| || |||||||||||| | ||||
Sbjct: 30676566 cccactggcaaccagtagagatgggctctggtggaggaacaatcatcaacacgttgtcat 30676625

                                                           
Query: 508      tcttttgaacaacacccatcacactcacagtgctgccttcctt 550
                ||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 30676626 tcttttgaacaacccccatcacactcacggtgctgccttcctt 30676668



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                                  
Query: 216      tttactagccttaatcacacctaacatttgtacatttttctcagttctaa 265
                ||||||| |||||||||  || ||||||||||||||||||||| ||||||
Sbjct: 30676349 tttactaaccttaatcatccccaacatttgtacatttttctcaattctaa 30676398



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 559      ccttcttttaggcgcattttccgaccatcac 589
                |||||||||||||||||| ||||| ||||||
Sbjct: 30676791 ccttcttttaggcgcattatccgatcatcac 30676821
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>gb|AY596559.1| Saccharum officinarum clone SCVPLB1018C01, complete sequence
          Length = 2065

 Score =  127 bits (64), Expect = 4e-26
 Identities = 122/140 (87%), Gaps = 1/140 (0%)
 Strand = Plus / Minus

                                                                        
Query: 448  cccactggcaaccagatgagatgggctctgatggaggtactatcatcaacacgctctcat 507
            ||||||| ||||||| |||||||||||| |||||||| || |||||||  ||  | || |
Sbjct: 1713 cccactgacaaccagttgagatgggctccgatggaggaacaatcatcagaacattgtcgt 1654

                                                                        
Query: 508  tcttttgaacaacacccatcacactcacagtgctgccttcctttgatgtatccttctttt 567
            || |||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 1653 tcctttggacaacccccatcacactcacagtgctaccttcctt-gatgtatccttctttt 1595

                                
Query: 568  aggcgcattttccgaccatc 587
            ||||||||| ||||| ||||
Sbjct: 1594 aggcgcattgtccgatcatc 1575



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 227  taatcacacctaacatttgtacatttttctca 258
            |||||||||| |||||||| ||||||||||||
Sbjct: 1904 taatcacacccaacatttgcacatttttctca 1873
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>ref|XM_480815.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1786

 Score =  115 bits (58), Expect = 2e-22
 Identities = 122/142 (85%), Gaps = 1/142 (0%)
 Strand = Plus / Minus

                                                                        
Query: 448  cccactggcaaccagatgagatgggctctgatggaggtactatcatcaacacgctctcat 507
            |||||||||| ||||  |||||||| || |||||||| || |||||||||||| | || |
Sbjct: 1405 cccactggcagccagtggagatgggttccgatggaggaacaatcatcaacacgttgtcgt 1346

                                                                        
Query: 508  tcttttgaacaacacccatcacactcacagtgctgccttcctttgatgtatccttctttt 567
            || |||||||||| ||||| |||||||| |||||||| ||| || |||||||||||||| 
Sbjct: 1345 tcctttgaacaacccccataacactcaccgtgctgccctcc-ttaatgtatccttctttc 1287

                                  
Query: 568  aggcgcattttccgaccatcac 589
            ||||||||| ||||| ||||||
Sbjct: 1286 aggcgcattatccgatcatcac 1265
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>ref|XM_507171.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0038P10.32
            mRNA
          Length = 2080

 Score =  115 bits (58), Expect = 2e-22
 Identities = 122/142 (85%), Gaps = 1/142 (0%)
 Strand = Plus / Minus

                                                                        
Query: 448  cccactggcaaccagatgagatgggctctgatggaggtactatcatcaacacgctctcat 507
            |||||||||| ||||  |||||||| || |||||||| || |||||||||||| | || |
Sbjct: 1702 cccactggcagccagtggagatgggttccgatggaggaacaatcatcaacacgttgtcgt 1643

                                                                        
Query: 508  tcttttgaacaacacccatcacactcacagtgctgccttcctttgatgtatccttctttt 567
            || |||||||||| ||||| |||||||| |||||||| ||| || |||||||||||||| 
Sbjct: 1642 tcctttgaacaacccccataacactcaccgtgctgccctcc-ttaatgtatccttctttc 1584

                                  
Query: 568  aggcgcattttccgaccatcac 589
            ||||||||| ||||| ||||||
Sbjct: 1583 aggcgcattatccgatcatcac 1562
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>dbj|AK069639.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026D01, full
            insert sequence
          Length = 2080

 Score =  115 bits (58), Expect = 2e-22
 Identities = 122/142 (85%), Gaps = 1/142 (0%)
 Strand = Plus / Minus

                                                                        
Query: 448  cccactggcaaccagatgagatgggctctgatggaggtactatcatcaacacgctctcat 507
            |||||||||| ||||  |||||||| || |||||||| || |||||||||||| | || |
Sbjct: 1702 cccactggcagccagtggagatgggttccgatggaggaacaatcatcaacacgttgtcgt 1643

                                                                        
Query: 508  tcttttgaacaacacccatcacactcacagtgctgccttcctttgatgtatccttctttt 567
            || |||||||||| ||||| |||||||| |||||||| ||| || |||||||||||||| 
Sbjct: 1642 tcctttgaacaacccccataacactcaccgtgctgccctcc-ttaatgtatccttctttc 1584

                                  
Query: 568  aggcgcattttccgaccatcac 589
            ||||||||| ||||| ||||||
Sbjct: 1583 aggcgcattatccgatcatcac 1562
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>dbj|AK060252.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-004-D04, full
            insert sequence
          Length = 1786

 Score =  115 bits (58), Expect = 2e-22
 Identities = 122/142 (85%), Gaps = 1/142 (0%)
 Strand = Plus / Minus

                                                                        
Query: 448  cccactggcaaccagatgagatgggctctgatggaggtactatcatcaacacgctctcat 507
            |||||||||| ||||  |||||||| || |||||||| || |||||||||||| | || |
Sbjct: 1405 cccactggcagccagtggagatgggttccgatggaggaacaatcatcaacacgttgtcgt 1346

                                                                        
Query: 508  tcttttgaacaacacccatcacactcacagtgctgccttcctttgatgtatccttctttt 567
            || |||||||||| ||||| |||||||| |||||||| ||| || |||||||||||||| 
Sbjct: 1345 tcctttgaacaacccccataacactcaccgtgctgccctcc-ttaatgtatccttctttc 1287

                                  
Query: 568  aggcgcattttccgaccatcac 589
            ||||||||| ||||| ||||||
Sbjct: 1286 aggcgcattatccgatcatcac 1265
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>gb|BT017922.1| Zea mays clone EL01N0519C02.c mRNA sequence
          Length = 1074

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 110/129 (85%), Gaps = 1/129 (0%)
 Strand = Plus / Minus

                                                                       
Query: 447 ccccactggcaaccagatgagatgggctctgatggaggtactatcatcaacacgctctca 506
           ||||||||||| ||||  ||||||||||| | |||||| || ||||||| |||| |||| 
Sbjct: 535 ccccactggcagccagtggagatgggctcggctggaggaacgatcatcagcacgttctcg 476

                                                                       
Query: 507 ttcttttgaacaacacccatcacactcacagtgctgccttcctttgatgtatccttcttt 566
           ||| | ||||| || |||||||| ||||| |||||||| ||| |||||||||||||||||
Sbjct: 475 ttcctctgaacgacgcccatcacgctcacggtgctgccctcc-ttgatgtatccttcttt 417

                    
Query: 567 taggcgcat 575
            ||||||||
Sbjct: 416 gaggcgcat 408
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 88/103 (85%)
 Strand = Plus / Minus

                                                                           
Query: 448     cccactggcaaccagatgagatgggctctgatggaggtactatcatcaacacgctctcat 507
               |||||||||| ||||  |||||||| || |||||||| || |||||||||||| | || |
Sbjct: 7937582 cccactggcagccagtggagatgggttccgatggaggaacaatcatcaacacgttgtcgt 7937523

                                                          
Query: 508     tcttttgaacaacacccatcacactcacagtgctgccttcctt 550
               || |||||||||| ||||| |||||||| |||||||| |||||
Sbjct: 7937522 tcctttgaacaacccccataacactcaccgtgctgccctcctt 7937480



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                           
Query: 465     gagatgggctctgatggaggtactatcatcaacacgctctcattcttttgaacaacaccc 524
               |||||||| || |||||| | || ||||||||||| || || ||| |||||||||| |||
Sbjct: 7913513 gagatgggttcagatggatgaacaatcatcaacacactgtcgttcctttgaacaaccccc 7913572

                 
Query: 525     at 526
               ||
Sbjct: 7913573 at 7913574
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>dbj|AP004559.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0461A06
          Length = 136384

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 88/103 (85%)
 Strand = Plus / Minus

                                                                        
Query: 448  cccactggcaaccagatgagatgggctctgatggaggtactatcatcaacacgctctcat 507
            |||||||||| ||||  |||||||| || |||||||| || |||||||||||| | || |
Sbjct: 9752 cccactggcagccagtggagatgggttccgatggaggaacaatcatcaacacgttgtcgt 9693

                                                       
Query: 508  tcttttgaacaacacccatcacactcacagtgctgccttcctt 550
            || |||||||||| ||||| |||||||| |||||||| |||||
Sbjct: 9692 tcctttgaacaacccccataacactcaccgtgctgccctcctt 9650
to top
>dbj|AP005410.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0038P10
          Length = 148527

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 88/103 (85%)
 Strand = Plus / Minus

                                                                          
Query: 448    cccactggcaaccagatgagatgggctctgatggaggtactatcatcaacacgctctcat 507
              |||||||||| ||||  |||||||| || |||||||| || |||||||||||| | || |
Sbjct: 127473 cccactggcagccagtggagatgggttccgatggaggaacaatcatcaacacgttgtcgt 127414

                                                         
Query: 508    tcttttgaacaacacccatcacactcacagtgctgccttcctt 550
              || |||||||||| ||||| |||||||| |||||||| |||||
Sbjct: 127413 tcctttgaacaacccccataacactcaccgtgctgccctcctt 127371



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                          
Query: 465    gagatgggctctgatggaggtactatcatcaacacgctctcattcttttgaacaacaccc 524
              |||||||| || |||||| | || ||||||||||| || || ||| |||||||||| |||
Sbjct: 103404 gagatgggttcagatggatgaacaatcatcaacacactgtcgttcctttgaacaaccccc 103463

                
Query: 525    at 526
              ||
Sbjct: 103464 at 103465
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>ref|NM_118355.1| Arabidopsis thaliana cysteine-type endopeptidase/ ubiquitin
            thiolesterase AT4G22290 mRNA, complete cds
          Length = 2925

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 47/54 (87%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 522  cccatcacactcacagtgctgccttcctttgatgtatccttcttttaggcgcat 575
            |||||||| ||||| ||||| ||||| ||| |||||||||||||| || |||||
Sbjct: 1181 cccatcacgctcactgtgcttccttctttt-atgtatccttctttgagacgcat 1129
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>emb|AJ833968.1| Zea mays partial mRNA for hypothetical protein (cuc3 gene), and 3'
           UTR
          Length = 1300

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 353 atcatcagcttgctatactggt 374
           ||||||||||||||||||||||
Sbjct: 509 atcatcagcttgctatactggt 488
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>gb|AY140104.1| Arabidopsis thaliana unknown protein mRNA, complete cds
          Length = 1717

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 47/54 (87%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 522  cccatcacactcacagtgctgccttcctttgatgtatccttcttttaggcgcat 575
            |||||||| ||||| ||||| ||||| ||| |||||||||||||| || |||||
Sbjct: 1267 cccatcacgctcactgtgcttccttctttt-atgtatccttctttgagacgcat 1215
to top
>gb|BT006592.1| Arabidopsis thaliana At4g22290 mRNA, complete cds
          Length = 1338

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 47/54 (87%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 522  cccatcacactcacagtgctgccttcctttgatgtatccttcttttaggcgcat 575
            |||||||| ||||| ||||| ||||| ||| |||||||||||||| || |||||
Sbjct: 1181 cccatcacgctcactgtgcttccttctttt-atgtatccttctttgagacgcat 1129
to top
>emb|BX827002.1|CNS0A4AI Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB85ZC10 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1702

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 47/54 (87%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 522  cccatcacactcacagtgctgccttcctttgatgtatccttcttttaggcgcat 575
            |||||||| ||||| ||||| ||||| ||| |||||||||||||| || |||||
Sbjct: 1250 cccatcacgctcactgtgcttccttctttt-atgtatccttctttgagacgcat 1198
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>emb|BX827259.1|CNS0A2E0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS2ZA05 of Adult vegetative tissue of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1669

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 47/54 (87%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 522  cccatcacactcacagtgctgccttcctttgatgtatccttcttttaggcgcat 575
            |||||||| ||||| ||||| ||||| ||| |||||||||||||| || |||||
Sbjct: 1241 cccatcacgctcactgtgcttccttctttt-atgtatccttctttgagacgcat 1189
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>emb|CT573215.2| Medicago truncatula chromosome 5 clone mth2-51h23, COMPLETE SEQUENCE
          Length = 121342

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 144   cgaaggaggacaaaacacattgaaaa 169
             |||| |||||||||||||||||||||
Sbjct: 86522 cgaatgaggacaaaacacattgaaaa 86497
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>gb|AF207550.3| Homo sapiens chromosome X multiple clones map p11.23, complete sequence
          Length = 128713

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 102   tattacacaagtattgagagctcat 126
             ||||||| |||||||||||||||||
Sbjct: 25917 tattacataagtattgagagctcat 25893
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>gb|AC102229.7| Mus musculus chromosome 15, clone RP24-70F9, complete sequence
          Length = 202156

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 533   cacagtgctgccttcctttga 553
             |||||||||||||||||||||
Sbjct: 91172 cacagtgctgccttcctttga 91192
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>gb|AC136611.2| Homo sapiens chromosome 16 clone RP11-159J3, complete sequence
          Length = 158324

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 241   atttgtacatttttctcagtt 261
             |||||||||||||||||||||
Sbjct: 93624 atttgtacatttttctcagtt 93604
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>gb|AC009030.10| Homo sapiens chromosome 16 clone RP11-13G6, complete sequence
          Length = 189379

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 241  atttgtacatttttctcagtt 261
            |||||||||||||||||||||
Sbjct: 9031 atttgtacatttttctcagtt 9011
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>gb|AC148226.7| Medicago truncatula clone mth2-5i20, complete sequence
          Length = 84259

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 149  gaggacaaaacacattgaaaa 169
            |||||||||||||||||||||
Sbjct: 3793 gaggacaaaacacattgaaaa 3773
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>gb|AC008055.7| Homo sapiens 12 BAC RP11-718L23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 196753

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 49    aaataacacataaacccgattcaac 73
             |||||||||||||||| ||||||||
Sbjct: 36934 aaataacacataaaccagattcaac 36958
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>dbj|AB042425.1| Homo sapiens Pim-2h, hUGT2, hUGT1, genes for pim-2 protooncogene
            homolog, UDP-galactose transporter 1, UDP-galactose
            transporter 2, complete cds
          Length = 19185

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 102  tattacacaagtattgagagctcat 126
            ||||||| |||||||||||||||||
Sbjct: 3202 tattacataagtattgagagctcat 3226
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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 317    ttccctcttcaacagcagct 336
              ||||||||||||||||||||
Sbjct: 642143 ttccctcttcaacagcagct 642162
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>gb|AC164170.7| Mus musculus 10 BAC RP24-419C12 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 158496

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 240    catttgtacatttttctcag 259
              ||||||||||||||||||||
Sbjct: 132989 catttgtacatttttctcag 132970
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 394     tatcttcacatctcacaacc 413
               ||||||||||||||||||||
Sbjct: 4508065 tatcttcacatctcacaacc 4508084
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>gb|BT013729.1| Lycopersicon esculentum clone 132589F, mRNA sequence
          Length = 1921

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 516  acaacacccatcacactcacagtgctgccttc 547
            ||||| ||||| |||||||||||||| |||||
Sbjct: 1426 acaactcccattacactcacagtgctaccttc 1395
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 546      tcctttgatgtatccttcttttag 569
                ||||||||| ||||||||||||||
Sbjct: 28707390 tcctttgatctatccttcttttag 28707413
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>gb|AC124757.4| Mus musculus BAC clone RP23-116P5 from 8, complete sequence
          Length = 210427

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 241    atttgtacatttttctcagt 260
              ||||||||||||||||||||
Sbjct: 201488 atttgtacatttttctcagt 201469
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>emb|CR391986.5| Zebrafish DNA sequence from clone CH211-195O20 in linkage group 17,
             complete sequence
          Length = 131805

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 153   acaaaacacattgaaaaaggactataca 180
             ||||||||||||| ||||| ||||||||
Sbjct: 89310 acaaaacacattgtaaaagcactataca 89283
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>emb|CR709912.2|CNS0GAPW Tetraodon nigroviridis full-length cDNA
          Length = 580

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 177 tacagccaaacacagattaaccag 200
           ||||||||||||||||| ||||||
Sbjct: 376 tacagccaaacacagataaaccag 399
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>gb|AC136986.6| Mus musculus chromosome 12, clone RP23-187H12, complete sequence
          Length = 206332

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 234    acctaacatttgtacatttt 253
              ||||||||||||||||||||
Sbjct: 147443 acctaacatttgtacatttt 147424
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>emb|BX323802.24| Zebrafish DNA sequence from clone DKEY-104I9 in linkage group 10,
              complete sequence
          Length = 109743

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 172    gactatacagccaaacacag 191
              ||||||||||||||||||||
Sbjct: 108878 gactatacagccaaacacag 108859
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>emb|AL390731.9| Human DNA sequence from clone RP11-506F17 on chromosome 13 Contains a
              thioredoxin-like 32kDa (TXNL) pseudogene, complete sequence
          Length = 166000

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 394    tatcttcacatctcacaaccagtc 417
              ||||||||||||||| ||||||||
Sbjct: 120070 tatcttcacatctcaaaaccagtc 120093
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>emb|AL353810.9| Human DNA sequence from clone RP11-261H15 on chromosome 9, complete
              sequence
          Length = 111330

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 324    ttcaacagcagctattccac 343
              ||||||||||||||||||||
Sbjct: 108511 ttcaacagcagctattccac 108492
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>emb|BX572093.1| Prochlorococcus marinus MED4 complete genome; segment 4/5
          Length = 348986

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 317    ttccctcttcaacagcagct 336
              ||||||||||||||||||||
Sbjct: 327198 ttccctcttcaacagcagct 327217
to top
>gb|AY158230.1| Mus musculus strain 129/SvJ chromosome 10 clone 10A1 unknown genomic
             sequence
          Length = 77891

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   catttgtacatttttctcag 259
             ||||||||||||||||||||
Sbjct: 67710 catttgtacatttttctcag 67691
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>gb|AE014179.1| Mus musculus piebald deletion region section 7 of 11 of the complete
              sequence
          Length = 400029

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 373    gtatcacatccatgtctgaa 392
              ||||||||||||||||||||
Sbjct: 183834 gtatcacatccatgtctgaa 183815
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>emb|BX323037.10| Zebrafish DNA sequence from clone DKEYP-8B6 in linkage group 24,
             complete sequence
          Length = 173818

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   gactatacagccaaacacag 191
             ||||||||||||||||||||
Sbjct: 41320 gactatacagccaaacacag 41301
to top
>gb|AC103691.2| Homo sapiens chromosome 15, clone RP11-959H21, complete sequence
          Length = 82781

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 437   gaaacaagtaccccactggc 456
             ||||||||||||||||||||
Sbjct: 44013 gaaacaagtaccccactggc 44032
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>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102
          Length = 1779707

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 39      agttcatcctaaataacacataaa 62
               ||||||| ||||||||||||||||
Sbjct: 1563953 agttcattctaaataacacataaa 1563930
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>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 224    ccttaatcacacctaacatt 243
              ||||||||||||||||||||
Sbjct: 600468 ccttaatcacacctaacatt 600449
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>ref|XM_689459.1| PREDICTED: Danio rerio similar to ryanodine receptor 1, skeletal
           muscle (LOC566189), mRNA
          Length = 3042

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 172 gactatacagccaaacacag 191
           ||||||||||||||||||||
Sbjct: 886 gactatacagccaaacacag 905
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 546      tcctttgatgtatccttcttttag 569
                ||||||||| ||||||||||||||
Sbjct: 28798714 tcctttgatctatccttcttttag 28798737
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>gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete
             sequence
          Length = 147344

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 546   tcctttgatgtatccttcttttag 569
             ||||||||| ||||||||||||||
Sbjct: 14371 tcctttgatctatccttcttttag 14394
to top
>emb|BX088525.4| Zebrafish DNA sequence from clone DKEYP-51F8 in linkage group 10,
            complete sequence
          Length = 212133

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 172  gactatacagccaaacacag 191
            ||||||||||||||||||||
Sbjct: 1135 gactatacagccaaacacag 1116
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>emb|AL928892.6| Zebrafish DNA sequence from clone DKEY-216E6, complete sequence
          Length = 179437

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   gactatacagccaaacacag 191
             ||||||||||||||||||||
Sbjct: 10063 gactatacagccaaacacag 10082
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>gb|AC111039.13| Mus musculus chromosome 5, clone RP24-463M5, complete sequence
          Length = 141949

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   tacatttttctcagttctaa 265
             ||||||||||||||||||||
Sbjct: 23198 tacatttttctcagttctaa 23217
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>emb|CT010449.10| Mouse DNA sequence from clone RP23-347O24 on chromosome 12, complete
              sequence
          Length = 203697

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 234    acctaacatttgtacatttt 253
              ||||||||||||||||||||
Sbjct: 197589 acctaacatttgtacatttt 197608
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>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome
          Length = 2519802

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 224     ccttaatcacacctaacatt 243
               ||||||||||||||||||||
Sbjct: 1778694 ccttaatcacacctaacatt 1778713
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>gb|AC135119.4| Mus musculus BAC clone RP24-535H19 from 14, complete sequence
          Length = 179520

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   gtatcacatccatgtctgaa 392
             ||||||||||||||||||||
Sbjct: 78793 gtatcacatccatgtctgaa 78774
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>gb|AC171336.3| Mus musculus  BAC RP24-286O17 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 164528

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   catttgtacatttttctcag 259
             ||||||||||||||||||||
Sbjct: 22060 catttgtacatttttctcag 22041


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,522,211
Number of Sequences: 3902068
Number of extensions: 5522211
Number of successful extensions: 130128
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 129868
Number of HSP's gapped (non-prelim): 254
length of query: 589
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 566
effective length of database: 17,143,297,704
effective search space: 9703106500464
effective search space used: 9703106500464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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