ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9g24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
2dbj|AP005730.2| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.009
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 50 0.009
5emb|AL713944.3|CNS07YPN Oryza sativa chromosome 12, . BAC OJ1116... 50 0.009
6ref|XM_381856.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 44 0.54
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.54
8dbj|AP004572.5| Oryza sativa (japonica cultivar-group) genomic D... 44 0.54
9dbj|AP003740.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.54
10gb|DQ125487.1| Toxoplasma gondii structural maintenance of chrom... 42 2.1
11emb|CR394544.15| Zebrafish DNA sequence from clone DKEY-117I6 in... 42 2.1
12emb|AL606760.9| Human DNA sequence from clone RP5-1024G6 on chro... 42 2.1
13dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
14dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
15dbj|AP003537.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
16dbj|AP003843.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
17gb|DQ219841.1| Tetrahymena thermophila Apm1Ap (APM1A) gene, comp... 42 2.1
18gb|M87298.1|CHKNPYA1 Chicken neuropeptide Y gene, exons 1-3 42 2.1
19gb|AC147806.5| Mus musculus chromosome 1, clone RP23-6O16, compl... 40 8.4
20ref|NM_024256.2| Mus musculus beta-1,3-glucuronyltransferase 3 (... 40 8.4
21gb|AE000660.1|HUAE000660 Homo sapiens T-cell receptor alpha delt... 40 8.4
22gb|AC133103.5| Mus musculus BAC clone RP23-226J10 from chromosom... 40 8.4
23gb|AC158993.2| Mus musculus BAC clone RP24-427N13 from chromosom... 40 8.4
24gb|AC125149.4| Mus musculus BAC clone RP24-354E17 from chromosom... 40 8.4
25gb|AC123856.4| Mus musculus BAC clone RP23-341H24 from chromosom... 40 8.4
26gb|BC004038.1| Mus musculus beta-1,3-glucuronyltransferase 3 (gl... 40 8.4
27gb|BC012930.1| Mus musculus beta-1,3-glucuronyltransferase 3 (gl... 40 8.4
28gb|AC120408.7| Mus musculus chromosome 5, clone RP24-433N14, com... 40 8.4
29gb|AC115742.13| Mus musculus chromosome 7, clone RP23-477E13, co... 40 8.4
30emb|CR954256.1| Anopheles gambiae Pen-1 region; BAC clones 30N20... 40 8.4
31gb|AC130819.4| Mus musculus BAC clone RP23-118O2 from chromosome... 40 8.4
32gb|AC129217.3| Mus musculus BAC clone RP24-458M20 from chromosom... 40 8.4
33gb|AC157761.6| Mus musculus chromosome 5, clone RP23-446J15, com... 40 8.4
34emb|AL021395.16|HS269M15 Human DNA sequence from clone RP1-269M1... 40 8.4
35gb|AC073153.16| Mus musculus Strain C57BL6/J chromosome 19 BAC, ... 40 8.4
36gb|AC128688.4| Homo sapiens 3 BAC RP11-757F18 (Roswell Park Canc... 40 8.4
37ref|NM_001000504.1| Rattus norvegicus olfactory receptor 37 (Olr... 40 8.4
38ref|NM_001000935.1| Rattus norvegicus olfactory receptor 36 (pre... 40 8.4
39gb|AC069307.7| Homo sapiens BAC clone RP11-738E22 from 4, comple... 40 8.4
40dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome 40 8.4
41dbj|AK144402.1| Mus musculus 8 days neonate male testis cDNA, RI... 40 8.4
42dbj|AK146264.1| Mus musculus TIB-55 BB88 cDNA, RIKEN full-length... 40 8.4
43gb|AE009869.1|AE009869 Pyrobaculum aerophilum strain IM2 section... 40 8.4
44dbj|AK163333.1| Mus musculus 2 cells egg cDNA, RIKEN full-length... 40 8.4
45gb|AC156247.2| Xenopus tropicalis clone ISB1-181M9, complete seq... 40 8.4
46dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
47gb|AC122920.4| Mus musculus BAC clone RP23-33J11 from chromosome... 40 8.4
48gb|BC002103.1| Mus musculus beta-1,3-glucuronyltransferase 3 (gl... 40 8.4
49emb|CT737308.2| Pan troglodytes chromosome X clone CH251-63C08 m... 40 8.4
50gb|BC099598.1| Mus musculus similar to Sp110 nuclear body protei... 40 8.4
51gb|AC105298.21| Mus musculus strain C57BL/6J chromosome 5 clone ... 40 8.4
52gb|AC140241.3| Mus musculus BAC clone RP23-283I15 from chromosom... 40 8.4
53emb|AL663018.4|OSJN00219 Oryza sativa genomic DNA, chromosome 4,... 40 8.4
54gb|AC132444.3| Mus musculus BAC clone RP23-160D6 from 8, complet... 40 8.4
55gb|AC131696.4| Mus musculus BAC clone RP23-403E5 from 1, complet... 40 8.4
56ref|NG_001332.1| Homo sapiens T cell receptor alpha delta locus ... 40 8.4
57gb|AC168977.6| Mus musculus chromosome 1, clone RP23-285N8, comp... 40 8.4
58emb|AL671916.5| Mouse DNA sequence from clone RP23-294O1 on chro... 40 8.4
59gb|AC163715.5| Mus musculus BAC clone RP23-367H6 from chromosome... 40 8.4 
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                             
Query: 544     cttctccaagatctgaaaggggccaaaatatttgaaggccagcttg 589
               |||||||| ||| ||||| || |||||||||||||| |||||||||
Sbjct: 1297812 cttctccaggatttgaaatggtccaaaatatttgaaagccagcttg 1297857
to top
>dbj|AP005730.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0073J19
          Length = 165174

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                            
Query: 544    cttctccaagatctgaaaggggccaaaatatttgaaggccagcttg 589
              |||||||| ||| ||||| || |||||||||||||| |||||||||
Sbjct: 127119 cttctccaggatttgaaatggtccaaaatatttgaaagccagcttg 127164
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                         
Query: 549      ccaagatctgaaaggggccaaaata 573
                |||||||||||||||||||||||||
Sbjct: 20173796 ccaagatctgaaaggggccaaaata 20173772
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                         
Query: 549      ccaagatctgaaaggggccaaaata 573
                |||||||||||||||||||||||||
Sbjct: 20100010 ccaagatctgaaaggggccaaaata 20099986
to top
>emb|AL713944.3|CNS07YPN Oryza sativa chromosome 12, . BAC OJ1116_G12 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 152862

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 549   ccaagatctgaaaggggccaaaata 573
             |||||||||||||||||||||||||
Sbjct: 38030 ccaagatctgaaaggggccaaaata 38006
to top
>ref|XM_381856.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01680.1)
            partial mRNA
          Length = 4950

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 548  tccaagatctgaaaggggccaa 569
            ||||||||||||||||||||||
Sbjct: 2534 tccaagatctgaaaggggccaa 2555
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 296     ctcccaggtagccaattcagctggca 321
               |||||||||||||||||||| |||||
Sbjct: 6916712 ctcccaggtagccaattcagttggca 6916737



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 419     ccattgtcagtggtttgggga 439
               |||||||||||||||||||||
Sbjct: 3952069 ccattgtcagtggtttgggga 3952049
to top
>dbj|AP004572.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0668C05
          Length = 142081

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 296   ctcccaggtagccaattcagctggca 321
             |||||||||||||||||||| |||||
Sbjct: 40527 ctcccaggtagccaattcagttggca 40552
to top
>dbj|AP003740.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1118_B03
          Length = 108992

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 296   ctcccaggtagccaattcagctggca 321
             |||||||||||||||||||| |||||
Sbjct: 72967 ctcccaggtagccaattcagttggca 72992
to top
>gb|DQ125487.1| Toxoplasma gondii structural maintenance of chromosome 4 (SMC4) gene,
            complete cds
          Length = 15840

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 151  ttctcctgtcttcttcatctt 171
            |||||||||||||||||||||
Sbjct: 7443 ttctcctgtcttcttcatctt 7423
to top
>emb|CR394544.15| Zebrafish DNA sequence from clone DKEY-117I6 in linkage group 7, complete
              sequence
          Length = 194826

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 342    acttgtaacagagctgcattt 362
              |||||||||||||||||||||
Sbjct: 167828 acttgtaacagagctgcattt 167848
to top
>emb|AL606760.9| Human DNA sequence from clone RP5-1024G6 on chromosome 1 Contains the
             CPT2 gene for carnitine palmitoyltransferase II, two novel
             genes, gene FLJ20580, the MAGOH gene for mago-nashi
             homolog, proliferation-associated (Drosophila) and the 3'
             end of the LRP8 gene for low density lipoprotein
             receptor-related protein 8 apolipoprotein e receptor,
             complete sequence
          Length = 120890

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 579   aggccagcttgggacaaggtc 599
             |||||||||||||||||||||
Sbjct: 80716 aggccagcttgggacaaggtc 80696
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 549      ccaagatctgaaaggggccaaaata 573
                |||||||||||||||| ||||||||
Sbjct: 12883304 ccaagatctgaaagggaccaaaata 12883328
to top
>dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0496D04
          Length = 197358

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 419    ccattgtcagtggtttgggga 439
              |||||||||||||||||||||
Sbjct: 191181 ccattgtcagtggtttgggga 191161
to top
>dbj|AP003537.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1140D12
          Length = 139301

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 549   ccaagatctgaaaggggccaaaata 573
             |||||||||||||||| ||||||||
Sbjct: 34745 ccaagatctgaaagggaccaaaata 34769
to top
>dbj|AP003843.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1656_E11
          Length = 116211

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 419   ccattgtcagtggtttgggga 439
             |||||||||||||||||||||
Sbjct: 54795 ccattgtcagtggtttgggga 54775
to top
>gb|DQ219841.1| Tetrahymena thermophila Apm1Ap (APM1A) gene, complete cds
          Length = 2187

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 421 attgtcagtggtttggggata 441
           |||||||||||||||||||||
Sbjct: 498 attgtcagtggtttggggata 478
to top
>gb|M87298.1|CHKNPYA1 Chicken neuropeptide Y gene, exons 1-3
          Length = 6423

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 577  gaaggccagcttgggacaagg 597
            |||||||||||||||||||||
Sbjct: 2224 gaaggccagcttgggacaagg 2204
to top
>gb|AC147806.5| Mus musculus chromosome 1, clone RP23-6O16, complete sequence
          Length = 229200

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 575   ttgaaggccagcttgggaca 594
             ||||||||||||||||||||
Sbjct: 80809 ttgaaggccagcttgggaca 80790
to top
>ref|NM_024256.2| Mus musculus beta-1,3-glucuronyltransferase 3
            (glucuronosyltransferase I) (B3gat3), mRNA
          Length = 1599

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 235  gagaagctgcttgtccccaa 254
            ||||||||||||||||||||
Sbjct: 1395 gagaagctgcttgtccccaa 1376
to top
>gb|AE000660.1|HUAE000660 Homo sapiens T-cell receptor alpha delta locus from bases 501613 to
           752736 (section 3 of 5) of the Complete Nucleotide
           Sequence
          Length = 251124

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                       
Query: 146 ctctgttctcctgtcttcttcatctttc 173
           |||||||||||||||||| |||||||||
Sbjct: 177 ctctgttctcctgtcttc-tcatctttc 203
to top
>gb|AC133103.5| Mus musculus BAC clone RP23-226J10 from chromosome 1, complete sequence
          Length = 241735

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 575    ttgaaggccagcttgggaca 594
              ||||||||||||||||||||
Sbjct: 161745 ttgaaggccagcttgggaca 161764



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 575   ttgaaggccagcttgggaca 594
             ||||||||||||||||||||
Sbjct: 79259 ttgaaggccagcttgggaca 79240



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 575   ttgaaggccagcttgggaca 594
             ||||||||||||||||||||
Sbjct: 31784 ttgaaggccagcttgggaca 31803
to top
>gb|AC158993.2| Mus musculus BAC clone RP24-427N13 from chromosome 7, complete sequence
          Length = 179746

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 573   atttgaaggccagcttggga 592
             ||||||||||||||||||||
Sbjct: 91417 atttgaaggccagcttggga 91436
to top
>gb|AC125149.4| Mus musculus BAC clone RP24-354E17 from chromosome 1, complete sequence
          Length = 169725

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 575    ttgaaggccagcttgggaca 594
              ||||||||||||||||||||
Sbjct: 148405 ttgaaggccagcttgggaca 148386



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 575    ttgaaggccagcttgggaca 594
              ||||||||||||||||||||
Sbjct: 109691 ttgaaggccagcttgggaca 109710
to top
>gb|AC123856.4| Mus musculus BAC clone RP23-341H24 from chromosome 1, complete sequence
          Length = 226881

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 575    ttgaaggccagcttgggaca 594
              ||||||||||||||||||||
Sbjct: 155497 ttgaaggccagcttgggaca 155478
to top
>gb|BC004038.1| Mus musculus beta-1,3-glucuronyltransferase 3
            (glucuronosyltransferase I), mRNA (cDNA clone MGC:7663
            IMAGE:3496170), complete cds
          Length = 1599

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 235  gagaagctgcttgtccccaa 254
            ||||||||||||||||||||
Sbjct: 1395 gagaagctgcttgtccccaa 1376
to top
>gb|BC012930.1| Mus musculus beta-1,3-glucuronyltransferase 3
            (glucuronosyltransferase I), mRNA (cDNA clone MGC:21378
            IMAGE:4500993), complete cds
          Length = 1585

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 235  gagaagctgcttgtccccaa 254
            ||||||||||||||||||||
Sbjct: 1384 gagaagctgcttgtccccaa 1365
to top
>gb|AC120408.7| Mus musculus chromosome 5, clone RP24-433N14, complete sequence
          Length = 178077

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 133    ccacacttagccactctgttctcc 156
              ||||||||| ||||||||||||||
Sbjct: 116856 ccacacttacccactctgttctcc 116879
to top
>gb|AC115742.13| Mus musculus chromosome 7, clone RP23-477E13, complete sequence
          Length = 186195

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 445   ctgaagactggagtatggtc 464
             ||||||||||||||||||||
Sbjct: 62172 ctgaagactggagtatggtc 62191
to top
>emb|CR954256.1| Anopheles gambiae Pen-1 region; BAC clones 30N20, 10K02, 13E09, 31J16 and
              01G10 from library NotreDame1 of Anopheles gambiae (African
              malaria mosquito) strain PEST
          Length = 447895

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 539    ccaatcttctccaagatctg 558
              ||||||||||||||||||||
Sbjct: 262026 ccaatcttctccaagatctg 262007
to top
>gb|AC130819.4| Mus musculus BAC clone RP23-118O2 from chromosome 19, complete sequence
          Length = 223575

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 235    gagaagctgcttgtccccaa 254
              ||||||||||||||||||||
Sbjct: 212422 gagaagctgcttgtccccaa 212441
to top
>gb|AC129217.3| Mus musculus BAC clone RP24-458M20 from chromosome 19, complete sequence
          Length = 175796

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 235    gagaagctgcttgtccccaa 254
              ||||||||||||||||||||
Sbjct: 159846 gagaagctgcttgtccccaa 159827
to top
>gb|AC157761.6| Mus musculus chromosome 5, clone RP23-446J15, complete sequence
          Length = 177868

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 133  ccacacttagccactctgttctcc 156
            ||||||||| ||||||||||||||
Sbjct: 7612 ccacacttacccactctgttctcc 7589
to top
>emb|AL021395.16|HS269M15 Human DNA sequence from clone RP1-269M15 on chromosome 20q12-13.12
              Contains the PPIAL gene for peptidylprolyl isomerase A
              (cyclophilin A)-like pseudogene, the 5' end of the PTPRT
              gene for protein tyrosine phosphatase receptor type T, a
              novel gene and two CpG Islands, complete sequence
          Length = 177562

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 403    tgtaaatcttcagtgtccat 422
              ||||||||||||||||||||
Sbjct: 106103 tgtaaatcttcagtgtccat 106122
to top
>gb|AC073153.16| Mus musculus Strain C57BL6/J chromosome 19 BAC, RP23-49P8 Complete
             Sequence, complete sequence
          Length = 220143

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   gagaagctgcttgtccccaa 254
             ||||||||||||||||||||
Sbjct: 70141 gagaagctgcttgtccccaa 70160
to top
>gb|AC128688.4| Homo sapiens 3 BAC RP11-757F18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 81001

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 598   tctgttgatcaaggatattg 617
             ||||||||||||||||||||
Sbjct: 36277 tctgttgatcaaggatattg 36258
to top
>ref|NM_001000504.1| Rattus norvegicus olfactory receptor 37 (Olr37), mRNA
          Length = 966

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 154 tcctgtcttcttcatctttc 173
           ||||||||||||||||||||
Sbjct: 90  tcctgtcttcttcatctttc 109
to top
>ref|NM_001000935.1| Rattus norvegicus olfactory receptor 36 (predicted)
           (Olr36_predicted), mRNA
          Length = 981

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 154 tcctgtcttcttcatctttc 173
           ||||||||||||||||||||
Sbjct: 90  tcctgtcttcttcatctttc 109
to top
>gb|AC069307.7| Homo sapiens BAC clone RP11-738E22 from 4, complete sequence
          Length = 203474

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   tttacctggctctgcagcac 194
             ||||||||||||||||||||
Sbjct: 72671 tttacctggctctgcagcac 72652
to top
>dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome
          Length = 2694756

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 159     tcttcttcatctttcatttacctg 182
               |||||||||||||||||| |||||
Sbjct: 1028609 tcttcttcatctttcattaacctg 1028632
to top
>dbj|AK144402.1| Mus musculus 8 days neonate male testis cDNA, RIKEN full-length
            enriched library, clone:G630055H14
            product:beta-1,3-glucuronyltransferase 3
            (glucuronosyltransferase I), full insert sequence
          Length = 1604

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 235  gagaagctgcttgtccccaa 254
            ||||||||||||||||||||
Sbjct: 1417 gagaagctgcttgtccccaa 1398
to top
>dbj|AK146264.1| Mus musculus TIB-55 BB88 cDNA, RIKEN full-length enriched library,
            clone:I730044B11 product:beta-1,3-glucuronyltransferase 3
            (glucuronosyltransferase I), full insert sequence
          Length = 1498

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 235  gagaagctgcttgtccccaa 254
            ||||||||||||||||||||
Sbjct: 1310 gagaagctgcttgtccccaa 1291
to top
>gb|AE009869.1|AE009869 Pyrobaculum aerophilum strain IM2 section 124 of 201 of the complete
             genome
          Length = 13561

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 473   gttgcttgagctgggactgg 492
             ||||||||||||||||||||
Sbjct: 10658 gttgcttgagctgggactgg 10677
to top
>dbj|AK163333.1| Mus musculus 2 cells egg cDNA, RIKEN full-length enriched library,
           clone:B020015G01 product:unclassifiable, full insert
           sequence
          Length = 2704

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 575 ttgaaggccagcttgggaca 594
           ||||||||||||||||||||
Sbjct: 648 ttgaaggccagcttgggaca 629
to top
>gb|AC156247.2| Xenopus tropicalis clone ISB1-181M9, complete sequence
          Length = 96628

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 429   tggtttggggatagatctga 448
             ||||||||||||||||||||
Sbjct: 13869 tggtttggggatagatctga 13888
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 296     ctcccaggtagccaattcag 315
               ||||||||||||||||||||
Sbjct: 5939559 ctcccaggtagccaattcag 5939578
to top
>gb|AC122920.4| Mus musculus BAC clone RP23-33J11 from chromosome 8, complete sequence
          Length = 229472

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 575    ttgaaggccagcttgggaca 594
              ||||||||||||||||||||
Sbjct: 119887 ttgaaggccagcttgggaca 119868



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 575   ttgaaggccagcttgggaca 594
             ||||||||||||||||||||
Sbjct: 80236 ttgaaggccagcttgggaca 80255
to top
>gb|BC002103.1| Mus musculus beta-1,3-glucuronyltransferase 3
            (glucuronosyltransferase I), mRNA (cDNA clone MGC:6591
            IMAGE:3485805), complete cds
          Length = 1473

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 235  gagaagctgcttgtccccaa 254
            ||||||||||||||||||||
Sbjct: 1262 gagaagctgcttgtccccaa 1243
to top
>emb|CT737308.2| Pan troglodytes chromosome X clone CH251-63C08 map Xq28, complete
             sequence
          Length = 166183

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 524   ttgtaagctgctggaccaat 543
             ||||||||||||||||||||
Sbjct: 70004 ttgtaagctgctggaccaat 70023
to top
>gb|BC099598.1| Mus musculus similar to Sp110 nuclear body protein, mRNA (cDNA
           clone IMAGE:3326350), complete cds
          Length = 1303

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 575 ttgaaggccagcttgggaca 594
           ||||||||||||||||||||
Sbjct: 512 ttgaaggccagcttgggaca 493
to top
>gb|AC105298.21| Mus musculus strain C57BL/6J chromosome 5 clone rp23-224j9, complete
              sequence
          Length = 258789

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 133    ccacacttagccactctgttctcc 156
              ||||||||| ||||||||||||||
Sbjct: 193369 ccacacttacccactctgttctcc 193346
to top
>gb|AC140241.3| Mus musculus BAC clone RP23-283I15 from chromosome 17, complete sequence
          Length = 158575

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 581    gccagcttgggacaaggtct 600
              ||||||||||||||||||||
Sbjct: 129332 gccagcttgggacaaggtct 129351
to top
>emb|AL663018.4|OSJN00219 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0045O17,
             complete sequence
          Length = 137981

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   ctcccaggtagccaattcag 315
             ||||||||||||||||||||
Sbjct: 82796 ctcccaggtagccaattcag 82815
to top
>gb|AC132444.3| Mus musculus BAC clone RP23-160D6 from 8, complete sequence
          Length = 206961

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 575   ttgaaggccagcttgggaca 594
             ||||||||||||||||||||
Sbjct: 71648 ttgaaggccagcttgggaca 71629



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 575   ttgaaggccagcttgggaca 594
             ||||||||||||||||||||
Sbjct: 31694 ttgaaggccagcttgggaca 31713
to top
>gb|AC131696.4| Mus musculus BAC clone RP23-403E5 from 1, complete sequence
          Length = 214068

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 575    ttgaaggccagcttgggaca 594
              ||||||||||||||||||||
Sbjct: 204486 ttgaaggccagcttgggaca 204505



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 575   ttgaaggccagcttgggaca 594
             ||||||||||||||||||||
Sbjct: 24761 ttgaaggccagcttgggaca 24780
to top
>ref|NG_001332.1| Homo sapiens T cell receptor alpha delta locus (TCRA/TCRD) on chromosome
              14
          Length = 1071646

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                          
Query: 146    ctctgttctcctgtcttcttcatctttc 173
              |||||||||||||||||| |||||||||
Sbjct: 501789 ctctgttctcctgtcttc-tcatctttc 501815
to top
>gb|AC168977.6| Mus musculus chromosome 1, clone RP23-285N8, complete sequence
          Length = 153618

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 575    ttgaaggccagcttgggaca 594
              ||||||||||||||||||||
Sbjct: 147075 ttgaaggccagcttgggaca 147094
to top
>emb|AL671916.5| Mouse DNA sequence from clone RP23-294O1 on chromosome X, complete
              sequence
          Length = 205436

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 566    ccaaaatatttgaaggccag 585
              ||||||||||||||||||||
Sbjct: 153404 ccaaaatatttgaaggccag 153423
to top
>gb|AC163715.5| Mus musculus BAC clone RP23-367H6 from chromosome 17, complete sequence
          Length = 208781

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 581    gccagcttgggacaaggtct 600
              ||||||||||||||||||||
Sbjct: 159141 gccagcttgggacaaggtct 159160


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,824,237
Number of Sequences: 3902068
Number of extensions: 5824237
Number of successful extensions: 117750
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 117426
Number of HSP's gapped (non-prelim): 326
length of query: 619
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 596
effective length of database: 17,143,297,704
effective search space: 10217405431584
effective search space used: 10217405431584
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top