ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9g17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ277210.1|ASA277210 Avena sativa mRNA for chlorophyll synth... 192 1e-45
2dbj|AK099004.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 3e-27
3dbj|AK068855.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 3e-27
4dbj|AK060912.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 3e-27
5gb|AY108751.1| Zea mays PCO143366 mRNA sequence 115 2e-22
6gb|AC136221.2| Oryza sativa (japonica cultivar-group) chromosome... 82 3e-12
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 82 3e-12
8ref|NM_115041.2| Arabidopsis thaliana prenyltransferase AT3G5182... 70 1e-08
9gb|AY081481.1| Arabidopsis thaliana chlorophyll synthetase (At3g... 70 1e-08
10gb|AY042821.1| Arabidopsis thaliana putative chlorophyll synthet... 70 1e-08
11emb|Z11158.1|ATEM1 A.thaliana Em protein gene (ATEM1) 50 0.009
12gb|AF049236.1|AF049236 Arabidopsis thaliana putative transmembra... 50 0.009
13gb|U19382.1|ATU19382 Arabidopsis thaliana putative chlorophyll s... 50 0.009
14emb|X90448.1|CHVORF34 Canine herpesvirus DNA for gene homolog of... 42 2.3
15gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 42 2.3
16gb|AC133961.3| Homo sapiens BAC clone RP13-494C23 from 4, comple... 42 2.3
17emb|BX294118.4| Zebrafish DNA sequence from clone DKEYP-38B6, co... 42 2.3
18gb|AE013059.1| Thermoanaerobacter tengcongensis MB4, section 86 ... 40 9.1
19gb|AC140331.2| Mus musculus BAC clone RP23-406J20 from chromosom... 40 9.1
20gb|AC073516.4| Homo sapiens BAC clone RP11-147C20 from 2, comple... 40 9.1
21gb|AC018678.9| Homo sapiens BAC clone RP11-279E17 from 2, comple... 40 9.1
22dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 9.1
23emb|CT573040.5| Wallaby DNA sequence from clone MEKBa-454A14, co... 40 9.1 
>emb|AJ277210.1|ASA277210 Avena sativa mRNA for chlorophyll synthase (chlG gene)
          Length = 1428

 Score =  192 bits (97), Expect = 1e-45
 Identities = 112/117 (95%)
 Strand = Plus / Minus

                                                                        
Query: 296  cgtcagtggctggtcgccagggcagtaaccagtaggccgaagacgaagaatggttgcgcg 355
            ||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 1139 cgtcagtggctggtcgccagggcggtaaccagcaggccgaagacgaagaacggttgcgcg 1080

                                                                     
Query: 356  ctcgcctggtatttgacgtcgtacttcacagggtccttcaggaagtactgaaactgc 412
            ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 1079 ctcgcctggtatttgacatcgtacttcacagggtccttcaggaagtactggaactgc 1023
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>dbj|AK099004.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108A17, full
            insert sequence
          Length = 1599

 Score =  131 bits (66), Expect = 3e-27
 Identities = 102/114 (89%)
 Strand = Plus / Minus

                                                                        
Query: 298  tcagtggctggtcgccagggcagtaaccagtaggccgaagacgaagaatggttgcgcgct 357
            |||||||||||| || ||||| || ||||| ||||| ||||||||||| |||||||||||
Sbjct: 1162 tcagtggctggttgcaagggcggtcaccagaaggcccaagacgaagaacggttgcgcgct 1103

                                                                  
Query: 358  cgcctggtatttgacgtcgtacttcacagggtccttcaggaagtactgaaactg 411
             ||||||||||||||||| ||||||||||||||||| |||||||| || |||||
Sbjct: 1102 tgcctggtatttgacgtcatacttcacagggtccttgaggaagtattggaactg 1049
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>dbj|AK068855.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169I11, full
            insert sequence
          Length = 1672

 Score =  131 bits (66), Expect = 3e-27
 Identities = 102/114 (89%)
 Strand = Plus / Minus

                                                                        
Query: 298  tcagtggctggtcgccagggcagtaaccagtaggccgaagacgaagaatggttgcgcgct 357
            |||||||||||| || ||||| || ||||| ||||| ||||||||||| |||||||||||
Sbjct: 1210 tcagtggctggttgcaagggcggtcaccagaaggcccaagacgaagaacggttgcgcgct 1151

                                                                  
Query: 358  cgcctggtatttgacgtcgtacttcacagggtccttcaggaagtactgaaactg 411
             ||||||||||||||||| ||||||||||||||||| |||||||| || |||||
Sbjct: 1150 tgcctggtatttgacgtcatacttcacagggtccttgaggaagtattggaactg 1097
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>dbj|AK060912.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F12, full
           insert sequence
          Length = 1073

 Score =  131 bits (66), Expect = 3e-27
 Identities = 102/114 (89%)
 Strand = Plus / Minus

                                                                       
Query: 298 tcagtggctggtcgccagggcagtaaccagtaggccgaagacgaagaatggttgcgcgct 357
           |||||||||||| || ||||| || ||||| ||||| ||||||||||| |||||||||||
Sbjct: 539 tcagtggctggttgcaagggcggtcaccagaaggcccaagacgaagaacggttgcgcgct 480

                                                                 
Query: 358 cgcctggtatttgacgtcgtacttcacagggtccttcaggaagtactgaaactg 411
            ||||||||||||||||| ||||||||||||||||| |||||||| || |||||
Sbjct: 479 tgcctggtatttgacgtcatacttcacagggtccttgaggaagtattggaactg 426
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>gb|AY108751.1| Zea mays PCO143366 mRNA sequence
          Length = 927

 Score =  115 bits (58), Expect = 2e-22
 Identities = 97/110 (88%)
 Strand = Plus / Minus

                                                                       
Query: 302 tggctggtcgccagggcagtaaccagtaggccgaagacgaagaatggttgcgcgctcgcc 361
           |||||||| ||||| || || ||||||||||| |  |||||||||||||| ||||| |||
Sbjct: 553 tggctggttgccagtgctgtcaccagtaggcccagtacgaagaatggttgtgcgcttgcc 494

                                                             
Query: 362 tggtatttgacgtcgtacttcacagggtccttcaggaagtactgaaactg 411
           || |||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct: 493 tgatatttgacatcatacttcacagggtccttcaggaagtactggaactg 444
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>gb|AC136221.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0077J17, complete sequence
          Length = 141598

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 53/57 (92%)
 Strand = Plus / Minus

                                                                      
Query: 360   cctggtatttgacgtcgtacttcacagggtccttcaggaagtactgaaactgctcca 416
             |||||||||||||||| ||||||||||||||||| |||||||| || ||||||||||
Sbjct: 21987 cctggtatttgacgtcatacttcacagggtccttgaggaagtattggaactgctcca 21931



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                         
Query: 298   tcagtggctggtcgccagggcagtaaccagtaggccgaagacgaagaatggttgcgcgct 357
             |||||||||||| || ||||| || ||||| ||||| ||||||||||| |||||||||||
Sbjct: 22180 tcagtggctggttgcaagggcggtcaccagaaggcccaagacgaagaacggttgcgcgct 22121

                   
Query: 358   cgcctg 363
              |||||
Sbjct: 22120 tgcctg 22115
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 53/57 (92%)
 Strand = Plus / Minus

                                                                         
Query: 360      cctggtatttgacgtcgtacttcacagggtccttcaggaagtactgaaactgctcca 416
                |||||||||||||||| ||||||||||||||||| |||||||| || ||||||||||
Sbjct: 16381550 cctggtatttgacgtcatacttcacagggtccttgaggaagtattggaactgctcca 16381494



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                            
Query: 298      tcagtggctggtcgccagggcagtaaccagtaggccgaagacgaagaatggttgcgcgct 357
                |||||||||||| || ||||| || ||||| ||||| ||||||||||| |||||||||||
Sbjct: 16381743 tcagtggctggttgcaagggcggtcaccagaaggcccaagacgaagaacggttgcgcgct 16381684

                      
Query: 358      cgcctg 363
                 |||||
Sbjct: 16381683 tgcctg 16381678
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>ref|NM_115041.2| Arabidopsis thaliana prenyltransferase AT3G51820 mRNA, complete cds
          Length = 1578

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                        
Query: 341  aagaatggttgcgcgctcgcctggtatttgacgtcgtacttcacagggtccttcaggaag 400
            |||||||| |||||||| |||||||| ||||||||||| || ||||||||||| || |||
Sbjct: 1237 aagaatggctgcgcgcttgcctggtacttgacgtcgtatttgacagggtccttgagaaag 1178

                       
Query: 401  tactgaaactg 411
            || | ||||||
Sbjct: 1177 tatttaaactg 1167
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>gb|AY081481.1| Arabidopsis thaliana chlorophyll synthetase (At3g51820) mRNA,
            complete cds
          Length = 1203

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                        
Query: 341  aagaatggttgcgcgctcgcctggtatttgacgtcgtacttcacagggtccttcaggaag 400
            |||||||| |||||||| |||||||| ||||||||||| || ||||||||||| || |||
Sbjct: 1121 aagaatggctgcgcgcttgcctggtacttgacgtcgtatttgacagggtccttgagaaag 1062

                       
Query: 401  tactgaaactg 411
            || | ||||||
Sbjct: 1061 tatttaaactg 1051
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>gb|AY042821.1| Arabidopsis thaliana putative chlorophyll synthetase (At3g51820)
            mRNA, complete cds
          Length = 1458

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                        
Query: 341  aagaatggttgcgcgctcgcctggtatttgacgtcgtacttcacagggtccttcaggaag 400
            |||||||| |||||||| |||||||| ||||||||||| || ||||||||||| || |||
Sbjct: 1237 aagaatggctgcgcgcttgcctggtacttgacgtcgtatttgacagggtccttgagaaag 1178

                       
Query: 401  tactgaaactg 411
            || | ||||||
Sbjct: 1177 tatttaaactg 1167
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>emb|Z11158.1|ATEM1 A.thaliana Em protein gene (ATEM1)
          Length = 3541

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                 
Query: 360  cctggtatttgacgtcgtacttcacagggtccttcaggaagtactgaaactgc 412
            ||||||| ||||||||||| || ||||||||||| || ||||| | |||||||
Sbjct: 3298 cctggtacttgacgtcgtatttgacagggtccttgagaaagtatttaaactgc 3350
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>gb|AF049236.1|AF049236 Arabidopsis thaliana putative transmembrane protein G1p (AtG1),
             putative nuclear DNA-binding protein G2p (AtG2), Em1
             protein (ATEM1), putative chlorophyll synthetase (AtG4),
             putative transmembrane protein G5p (AtG5), putative
             acyl-coA dehydrogenase (AtG6), and calcium dependent
             protein kinase genes, complete cds; and unknown genes
          Length = 60000

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                  
Query: 360   cctggtatttgacgtcgtacttcacagggtccttcaggaagtactgaaactgc 412
             ||||||| ||||||||||| || ||||||||||| || ||||| | |||||||
Sbjct: 18837 cctggtacttgacgtcgtatttgacagggtccttgagaaagtatttaaactgc 18889
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>gb|U19382.1|ATU19382 Arabidopsis thaliana putative chlorophyll synthetase (G4) gene,
            complete cds
          Length = 3660

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 360  cctggtatttgacgtcgtacttcacagggtccttcaggaagtactgaaactgc 412
            ||||||| ||||||||||| || ||||||||||| || ||||| | |||||||
Sbjct: 2889 cctggtacttgacgtcgtatttgacagggtccttgagaaagtatttaaactgc 2837
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>emb|X90448.1|CHVORF34 Canine herpesvirus DNA for gene homolog of HSV1 UL36, VZV ORF 22,
           EHV1 ORF 24 (bp 532)
          Length = 532

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 480 aatcgtctatagttttcatgt 500
           |||||||||||||||||||||
Sbjct: 307 aatcgtctatagttttcatgt 287
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 353     gcgctcgcctggtatttgacgtcgt 377
               ||||| |||||||||||||||||||
Sbjct: 2152796 gcgctggcctggtatttgacgtcgt 2152772
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>gb|AC133961.3| Homo sapiens BAC clone RP13-494C23 from 4, complete sequence
          Length = 177787

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 492   ttttcatgttcttataagagctata 516
             |||||||| ||||||||||||||||
Sbjct: 74348 ttttcatggtcttataagagctata 74324
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>emb|BX294118.4| Zebrafish DNA sequence from clone DKEYP-38B6, complete sequence
          Length = 184616

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 578  ttcaattatttggtttgatgg 598
            |||||||||||||||||||||
Sbjct: 9305 ttcaattatttggtttgatgg 9285
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>gb|AE013059.1| Thermoanaerobacter tengcongensis MB4, section 86 of 244 of the
            complete genome
          Length = 9205

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 128  tacaggtacagcagcagaag 147
            ||||||||||||||||||||
Sbjct: 1380 tacaggtacagcagcagaag 1399
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>gb|AC140331.2| Mus musculus BAC clone RP23-406J20 from chromosome 13, complete
             sequence
          Length = 192473

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 214   cttattccactaactgtgtt 233
             ||||||||||||||||||||
Sbjct: 84523 cttattccactaactgtgtt 84542
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>gb|AC073516.4| Homo sapiens BAC clone RP11-147C20 from 2, complete sequence
          Length = 85368

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 621   aaggggagcatgttctgaaa 640
             ||||||||||||||||||||
Sbjct: 37275 aaggggagcatgttctgaaa 37294
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>gb|AC018678.9| Homo sapiens BAC clone RP11-279E17 from 2, complete sequence
          Length = 169991

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 401   tactgaaactgctccaggaaattaagga 428
             ||||||||||| ||||| ||||||||||
Sbjct: 33154 tactgaaactgttccagaaaattaagga 33127
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 520     gccagtctgacaagccatgcagtt 543
               |||||||||||| |||||||||||
Sbjct: 3364582 gccagtctgacaggccatgcagtt 3364605
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>emb|CT573040.5| Wallaby DNA sequence from clone MEKBa-454A14, complete sequence
          Length = 164317

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 603    aataggaaatttctgaaaaa 622
              ||||||||||||||||||||
Sbjct: 156707 aataggaaatttctgaaaaa 156688


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,330,496
Number of Sequences: 3902068
Number of extensions: 5330496
Number of successful extensions: 103541
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103454
Number of HSP's gapped (non-prelim): 87
length of query: 665
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 642
effective length of database: 17,143,297,704
effective search space: 11005997125968
effective search space used: 11005997125968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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