ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9g15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U76747.1|TAU76747 Triticum aestivum Tap mRNA, partial cds 646 0.0
2ref|XM_463780.1| Oryza sativa (japonica cultivar-group), mRNA 180 4e-42
3dbj|AK105706.1| Oryza sativa (japonica cultivar-group) cDNA clon... 180 4e-42
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 149 1e-32
5dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic D... 149 1e-32
6dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic D... 149 1e-32
7gb|AY103840.1| Zea mays PCO125096 mRNA sequence 123 8e-25
8ref|NM_120021.2| Arabidopsis thaliana KAK (KAKTUS) AT4G38600 (KA... 62 3e-06
9ref|NM_179236.2| Arabidopsis thaliana KAK (KAKTUS) AT4G38600 (KA... 62 3e-06
10gb|AY265959.1| Arabidopsis thaliana HECT ubiquitin-protein ligas... 62 3e-06
11tpe|BN000268.1|ATH000268 TPA: TPA_exp: Arabidopsis thaliana mRNA... 62 3e-06
12gb|AY365037.1| Zea mays putative protein 1-like gene, partial se... 54 6e-04
13gb|BT019325.1| Zea mays clone Contig1034.F mRNA sequence 46 0.15
14ref|NM_208312.1| Eremothecium gossypii ABR013Wp (ABR013W), mRNA 46 0.15
15gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 46 0.15
16ref|XM_503583.1| Yarrowia lipolytica CLIB122, YALI0E05401g predi... 44 0.59
17dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.59
18dbj|AP005308.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.59
19emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ... 44 0.59
20emb|AL606932.10| Mouse DNA sequence from clone RP23-247I20 on ch... 44 0.59
21ref|XM_389417.1| Gibberella zeae PH-1 chromosome 4 hypothetical ... 42 2.3
22gb|AC146568.11| Medicago truncatula clone mth2-101o18, complete ... 42 2.3
23gb|AC161814.2| Mus musculus BAC clone RP24-120E13 from chromosom... 42 2.3
24gb|AC154553.3| Mus musculus BAC clone RP23-416K11 from chromosom... 42 2.3
25gb|AC126670.4| Mus musculus BAC clone RP24-469G14 from chromosom... 40 9.3
26gb|AC122806.4| Mus musculus BAC clone RP23-297C11 from 8, comple... 40 9.3
27emb|AL137018.9| Human DNA sequence from clone RP11-133M9 on chro... 40 9.3
28emb|Z69727.1|SPAC4G9 S.pombe chromosome I cosmid c4G9 40 9.3
29emb|AL161593.2|ATCHRIV89 Arabidopsis thaliana DNA chromosome 4, ... 40 9.3
30emb|BX572104.6| Zebrafish DNA sequence from clone DKEY-5K4 in li... 40 9.3
31gb|AC079874.21| Oryza sativa chromosome 10 BAC OSJNBa0042H09 gen... 40 9.3
32gb|AC124526.6| Mus musculus BAC clone RP23-406P13 from chromosom... 40 9.3
33emb|BX294102.9| Zebrafish DNA sequence from clone DKEY-257H21 in... 40 9.3
34dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
35gb|AC007824.5|AC007824 Drosophila melanogaster, chromosome 3R, r... 40 9.3
36gb|AC069558.5|AC069558 Genomic Sequence For Arabidopsis thaliana... 40 9.3
37gb|AC069327.7|AC069327 Genomic Sequence For Arabidopsis thaliana... 40 9.3
38dbj|AP006450.4| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
39dbj|AP006162.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
40gb|AE003716.5| Drosophila melanogaster chromosome 3R, section 54... 40 9.3
41gb|AC107453.14| Mus musculus chromosome 15, clone RP23-315F3, co... 40 9.3
42gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.3
43emb|AL928828.6| Zebrafish DNA sequence from clone CH211-30I2, co... 40 9.3
44emb|AL035540.1|ATF20M13 Arabidopsis thaliana DNA chromosome 4, B... 40 9.3 
>gb|U76747.1|TAU76747 Triticum aestivum Tap mRNA, partial cds
          Length = 621

 Score =  646 bits (326), Expect = 0.0
 Identities = 481/526 (91%), Gaps = 19/526 (3%)
 Strand = Plus / Minus

                                                                       
Query: 113 gacaaatatgtttactcctttttatttacaatgtattggagg-aaaggtgctcctgatac 171
           ||||||||||| |||||||||||||||||| |||| |||||| |||||||||||||||||
Sbjct: 523 gacaaatatgtatactcctttttatttaca-tgtactggagggaaaggtgctcctgatac 465

                                                                       
Query: 172 ttgtcggtggtg------ctcgcgaggctcgccgcttcagcaggttcgactgatctttca 225
           ||||||||||||      ||| |||||||||||||||||||| ||||     | ||||||
Sbjct: 464 ttgtcggtggtggtggtgctcacgaggctcgccgcttcagcaagttc-----aactttca 410

                                                                       
Query: 226 agctttatgcggagcggctggtaacctcaacct---atgttattgcaggcaacgaagaag 282
           |||||||||||||||||||||||||||||||||   |||||||| |||||||| ||||||
Sbjct: 409 agctttatgcggagcggctggtaacctcaacctatgatgttattacaggcaaccaagaag 350

                                                                       
Query: 283 aaaactatttcgggataaaattgacgggcatccaatggtgagccctgtatcgttagttta 342
           ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 349 aaaactaattcgggataaaattgacgggcgtccaatggtgagccctgtatcgttag-tta 291

                                                                       
Query: 343 tcagctcaggatagatcaaaagatccacggccttctaggatggcgtagagcagcttcttg 402
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 290 tcagctcaggatagatcaaaagatccacggccttctaggatggcgtanagcagcttcttg 231

                                                                       
Query: 403 cgcatgacttcttttgtggaatacgggggtagtttgagataattggcacacgtcatgaca 462
           ||||||||||| ||||||||||| |||||||| |||||||||||||| || |||||||||
Sbjct: 230 cgcatgacttcctttgtggaatatgggggtagcttgagataattggcgcatgtcatgaca 171

                                                                       
Query: 463 ctgggcagatcgtcatccgcagcgtctgttaccccgcttgtattcaatgcactcacccca 522
           ||||||| |||||| ||||| ||||||||||||||||||||||||||   ||||||||||
Sbjct: 170 ctgggcaaatcgtcgtccgcggcgtctgttaccccgcttgtattcaaactactcacccca 111

                                                                       
Query: 523 ctcgaggggtgctttcgaactatggtaagcctgggactaagggcagccaaaccaccagtt 582
           ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 110 ctcgaagggtgctttcgaactatggtaagcttgggactaagggcagccaaaccaccagtt 51

                                                         
Query: 583 -ggaag-ccgagaagcaccagttacaaactggcagaatgcatgctg 626
            ||||| || |||||| || ||||||||||||||||||||||||||
Sbjct: 50  gggaagcccaagaagcgccggttacaaactggcagaatgcatgctg 5



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                       
Query: 8   atttattatnnagttacacatgtacagaaagtcgaagcaaacacagcaacattctcaaat 67
           |||||||||  ||||||||||||||| || ||| ||||||||||||||||||||||||||
Sbjct: 593 atttattatcgagttacacatgtacacaatgtcaaagcaaacacagcaacattctcaaat 534

                         
Query: 68  cggtacataagaca 81
           || |||||| ||||
Sbjct: 533 cgatacataggaca 520
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>ref|XM_463780.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 5346

 Score =  180 bits (91), Expect = 4e-42
 Identities = 145/163 (88%)
 Strand = Plus / Minus

                                                                        
Query: 515  tcaccccactcgaggggtgctttcgaactatggtaagcctgggactaagggcagccaaac 574
            ||||| |||| ||||||||||| | |||||| |||||| ||||| |||||||||| ||||
Sbjct: 5179 tcaccgcacttgaggggtgcttcctaactatagtaagcttgggattaagggcagctaaac 5120

                                                                        
Query: 575  caccagttggaagccgagaagcaccagttacaaactggcagaatgcatgctgttgatcag 634
            ||||||  |||||||||| |||||||||||||||||||||||||||||| ||||| || |
Sbjct: 5119 caccaggcggaagccgaggagcaccagttacaaactggcagaatgcatgttgttgctctg 5060

                                                       
Query: 635  gggtaaattccgccatgatctcgagtagatttataatggcagg 677
            |||| ||||| |||||||||||||||||||||| ||| |||||
Sbjct: 5059 gggtgaattcagccatgatctcgagtagatttacaattgcagg 5017



 Score =  113 bits (57), Expect = 8e-22
 Identities = 114/133 (85%)
 Strand = Plus / Minus

                                                                        
Query: 352  gatagatcaaaagatccacggccttctaggatggcgtagagcagcttcttgcgcatgact 411
            ||||||||||| |||||||||||||||||||| || || ||||  ||||||||||| |||
Sbjct: 5342 gatagatcaaatgatccacggccttctaggatcgcataaagcaatttcttgcgcatcact 5283

                                                                        
Query: 412  tcttttgtggaatacgggggtagtttgagataattggcacacgtcatgacactgggcaga 471
            ||||||||||| || || || | ||| |||||||| ||||| ||||| ||||| ||||||
Sbjct: 5282 tcttttgtggagtatggaggcaatttaagataattagcacatgtcataacacttggcaga 5223

                         
Query: 472  tcgtcatccgcag 484
            || ||||| ||||
Sbjct: 5222 tcatcatctgcag 5210
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>dbj|AK105706.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-E03, full
            insert sequence
          Length = 2561

 Score =  180 bits (91), Expect = 4e-42
 Identities = 145/163 (88%)
 Strand = Plus / Minus

                                                                        
Query: 515  tcaccccactcgaggggtgctttcgaactatggtaagcctgggactaagggcagccaaac 574
            ||||| |||| ||||||||||| | |||||| |||||| ||||| |||||||||| ||||
Sbjct: 1990 tcaccgcacttgaggggtgcttcctaactatagtaagcttgggattaagggcagctaaac 1931

                                                                        
Query: 575  caccagttggaagccgagaagcaccagttacaaactggcagaatgcatgctgttgatcag 634
            ||||||  |||||||||| |||||||||||||||||||||||||||||| ||||| || |
Sbjct: 1930 caccaggcggaagccgaggagcaccagttacaaactggcagaatgcatgttgttgctctg 1871

                                                       
Query: 635  gggtaaattccgccatgatctcgagtagatttataatggcagg 677
            |||| ||||| |||||||||||||||||||||| ||| |||||
Sbjct: 1870 gggtgaattcagccatgatctcgagtagatttacaattgcagg 1828



 Score =  145 bits (73), Expect = 2e-31
 Identities = 174/204 (85%), Gaps = 4/204 (1%)
 Strand = Plus / Minus

                                                                        
Query: 284  aaactatttcgggataaaattgac-gggcatccaatggtgagccctgtatcgttagttt- 341
            |||||| ||| ||||||||||||  |||||| |||||||||||||||||| |||||||  
Sbjct: 2223 aaactaattctggataaaattgatagggcattcaatggtgagccctgtat-gttagttat 2165

                                                                        
Query: 342  -atcagctcaggatagatcaaaagatccacggccttctaggatggcgtagagcagcttct 400
             |||| |||| ||||||||||| |||||||||||||||||||| || || ||||  ||||
Sbjct: 2164 catcaactcatgatagatcaaatgatccacggccttctaggatcgcataaagcaatttct 2105

                                                                        
Query: 401  tgcgcatgacttcttttgtggaatacgggggtagtttgagataattggcacacgtcatga 460
            ||||||| |||||||||||||| || || || | ||| |||||||| ||||| ||||| |
Sbjct: 2104 tgcgcatcacttcttttgtggagtatggaggcaatttaagataattagcacatgtcataa 2045

                                    
Query: 461  cactgggcagatcgtcatccgcag 484
            |||| |||||||| ||||| ||||
Sbjct: 2044 cacttggcagatcatcatctgcag 2021
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
             complete sequence
          Length = 35954743

 Score =  149 bits (75), Expect = 1e-32
 Identities = 111/123 (90%)
 Strand = Plus / Plus

                                                                         
Query: 540   aactatggtaagcctgggactaagggcagccaaaccaccagttggaagccgagaagcacc 599
             |||||| |||||| ||||| |||||||||| ||||||||||  |||||||||| ||||||
Sbjct: 87599 aactatagtaagcttgggattaagggcagctaaaccaccaggcggaagccgaggagcacc 87658

                                                                         
Query: 600   agttacaaactggcagaatgcatgctgttgatcaggggtaaattccgccatgatctcgag 659
             |||||||||||||||||||||||| ||||| || ||||| ||||| ||||||||||||||
Sbjct: 87659 agttacaaactggcagaatgcatgttgttgctctggggtgaattcagccatgatctcgag 87718

                
Query: 660   tag 662
             |||
Sbjct: 87719 tag 87721



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 115/133 (86%), Gaps = 4/133 (3%)
 Strand = Plus / Plus

                                                                         
Query: 284   aaactatttcgggataaaattgac-gggcatccaatggtgagccctgtatcgttagttt- 341
             |||||| ||| ||||||||||||  |||||| |||||||||||||||||| |||||||  
Sbjct: 87149 aaactaattctggataaaattgatagggcattcaatggtgagccctgtat-gttagttat 87207

                                                                         
Query: 342   -atcagctcaggatagatcaaaagatccacggccttctaggatggcgtagagcagcttct 400
              |||| |||| ||||||||||| |||||||||||||||||||| || || ||||  ||||
Sbjct: 87208 catcaactcatgatagatcaaatgatccacggccttctaggatcgcataaagcaatttct 87267

                          
Query: 401   tgcgcatgacttc 413
             ||||||| |||||
Sbjct: 87268 tgcgcatcacttc 87280
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>dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1370C05
          Length = 148271

 Score =  149 bits (75), Expect = 1e-32
 Identities = 111/123 (90%)
 Strand = Plus / Plus

                                                                         
Query: 540   aactatggtaagcctgggactaagggcagccaaaccaccagttggaagccgagaagcacc 599
             |||||| |||||| ||||| |||||||||| ||||||||||  |||||||||| ||||||
Sbjct: 82208 aactatagtaagcttgggattaagggcagctaaaccaccaggcggaagccgaggagcacc 82267

                                                                         
Query: 600   agttacaaactggcagaatgcatgctgttgatcaggggtaaattccgccatgatctcgag 659
             |||||||||||||||||||||||| ||||| || ||||| ||||| ||||||||||||||
Sbjct: 82268 agttacaaactggcagaatgcatgttgttgctctggggtgaattcagccatgatctcgag 82327

                
Query: 660   tag 662
             |||
Sbjct: 82328 tag 82330



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 115/133 (86%), Gaps = 4/133 (3%)
 Strand = Plus / Plus

                                                                         
Query: 284   aaactatttcgggataaaattgac-gggcatccaatggtgagccctgtatcgttagttt- 341
             |||||| ||| ||||||||||||  |||||| |||||||||||||||||| |||||||  
Sbjct: 81758 aaactaattctggataaaattgatagggcattcaatggtgagccctgtat-gttagttat 81816

                                                                         
Query: 342   -atcagctcaggatagatcaaaagatccacggccttctaggatggcgtagagcagcttct 400
              |||| |||| ||||||||||| |||||||||||||||||||| || || ||||  ||||
Sbjct: 81817 catcaactcatgatagatcaaatgatccacggccttctaggatcgcataaagcaatttct 81876

                          
Query: 401   tgcgcatgacttc 413
             ||||||| |||||
Sbjct: 81877 tgcgcatcacttc 81889
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>dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1435_F07
          Length = 139041

 Score =  149 bits (75), Expect = 1e-32
 Identities = 111/123 (90%)
 Strand = Plus / Plus

                                                                         
Query: 540   aactatggtaagcctgggactaagggcagccaaaccaccagttggaagccgagaagcacc 599
             |||||| |||||| ||||| |||||||||| ||||||||||  |||||||||| ||||||
Sbjct: 36626 aactatagtaagcttgggattaagggcagctaaaccaccaggcggaagccgaggagcacc 36685

                                                                         
Query: 600   agttacaaactggcagaatgcatgctgttgatcaggggtaaattccgccatgatctcgag 659
             |||||||||||||||||||||||| ||||| || ||||| ||||| ||||||||||||||
Sbjct: 36686 agttacaaactggcagaatgcatgttgttgctctggggtgaattcagccatgatctcgag 36745

                
Query: 660   tag 662
             |||
Sbjct: 36746 tag 36748



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 115/133 (86%), Gaps = 4/133 (3%)
 Strand = Plus / Plus

                                                                         
Query: 284   aaactatttcgggataaaattgac-gggcatccaatggtgagccctgtatcgttagttt- 341
             |||||| ||| ||||||||||||  |||||| |||||||||||||||||| |||||||  
Sbjct: 36176 aaactaattctggataaaattgatagggcattcaatggtgagccctgtat-gttagttat 36234

                                                                         
Query: 342   -atcagctcaggatagatcaaaagatccacggccttctaggatggcgtagagcagcttct 400
              |||| |||| ||||||||||| |||||||||||||||||||| || || ||||  ||||
Sbjct: 36235 catcaactcatgatagatcaaatgatccacggccttctaggatcgcataaagcaatttct 36294

                          
Query: 401   tgcgcatgacttc 413
             ||||||| |||||
Sbjct: 36295 tgcgcatcacttc 36307
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>gb|AY103840.1| Zea mays PCO125096 mRNA sequence
          Length = 1983

 Score =  123 bits (62), Expect = 8e-25
 Identities = 110/126 (87%)
 Strand = Plus / Minus

                                                                        
Query: 540  aactatggtaagcctgggactaagggcagccaaaccaccagttggaagccgagaagcacc 599
            |||||| |||||| |||| |||||||||||||| ||||||  ||||||||||| ||||||
Sbjct: 1651 aactatagtaagcttggggctaagggcagccaatccaccatgtggaagccgaggagcacc 1592

                                                                        
Query: 600  agttacaaactggcagaatgcatgctgttgatcaggggtaaattccgccatgatctcgag 659
             ||||||||||||||||| |||||||| || |||||||| ||||| | ||  ||||||||
Sbjct: 1591 ggttacaaactggcagaacgcatgctgctgctcaggggtgaattctgacaaaatctcgag 1532

                  
Query: 660  tagatt 665
            ||||||
Sbjct: 1531 tagatt 1526



 Score =  105 bits (53), Expect = 2e-19
 Identities = 107/125 (85%)
 Strand = Plus / Minus

                                                                        
Query: 355  agatcaaaagatccacggccttctaggatggcgtagagcagcttcttgcgcatgacttct 414
            |||||||| ||||| |||||||| ||||| || || |||| |||||||||||||| ||||
Sbjct: 1836 agatcaaatgatcctcggccttccaggatcgcataaagcaacttcttgcgcatgatttct 1777

                                                                        
Query: 415  tttgtggaatacgggggtagtttgagataattggcacacgtcatgacactgggcagatcg 474
            |||||||| || ||||| || || ||||||||||| |||||||| ||||| |||| ||| 
Sbjct: 1776 tttgtggagtaggggggcagcttcagataattggcgcacgtcatcacactaggcaaatca 1717

                 
Query: 475  tcatc 479
            |||||
Sbjct: 1716 tcatc 1712
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>ref|NM_120021.2| Arabidopsis thaliana KAK (KAKTUS) AT4G38600 (KAK) transcript variant
            AT4G38600.2 mRNA, complete cds
          Length = 5954

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 82/99 (82%)
 Strand = Plus / Minus

                                                                        
Query: 381  gatggcgtagagcagcttcttgcgcatgacttcttttgtggaatacgggggtagtttgag 440
            ||||||||||||||| ||||||  ||||| ||| ||||| ||||| || || ||||| ||
Sbjct: 5531 gatggcgtagagcagtttcttgtacatgatttcctttgtagaataaggagggagtttaag 5472

                                                   
Query: 441  ataattggcacacgtcatgacactgggcagatcgtcatc 479
             || || || || |||||||||||||||| ||| |||||
Sbjct: 5471 gtagtttgcgcaagtcatgacactgggcaaatcatcatc 5433



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 574  ccaccagttggaagccgagaagcaccagttacaaactggcagaa 617
            |||||||  ||||||| || ||| ||||||||||| ||||||||
Sbjct: 5338 ccaccaggaggaagcctaggagctccagttacaaattggcagaa 5295
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>ref|NM_179236.2| Arabidopsis thaliana KAK (KAKTUS) AT4G38600 (KAK) transcript variant
            AT4G38600.1 mRNA, complete cds
          Length = 6139

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 82/99 (82%)
 Strand = Plus / Minus

                                                                        
Query: 381  gatggcgtagagcagcttcttgcgcatgacttcttttgtggaatacgggggtagtttgag 440
            ||||||||||||||| ||||||  ||||| ||| ||||| ||||| || || ||||| ||
Sbjct: 5634 gatggcgtagagcagtttcttgtacatgatttcctttgtagaataaggagggagtttaag 5575

                                                   
Query: 441  ataattggcacacgtcatgacactgggcagatcgtcatc 479
             || || || || |||||||||||||||| ||| |||||
Sbjct: 5574 gtagtttgcgcaagtcatgacactgggcaaatcatcatc 5536



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 574  ccaccagttggaagccgagaagcaccagttacaaactggcagaa 617
            |||||||  ||||||| || ||| ||||||||||| ||||||||
Sbjct: 5441 ccaccaggaggaagcctaggagctccagttacaaattggcagaa 5398
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>gb|AY265959.1| Arabidopsis thaliana HECT ubiquitin-protein ligase 3 mRNA, complete
            cds
          Length = 6138

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 82/99 (82%)
 Strand = Plus / Minus

                                                                        
Query: 381  gatggcgtagagcagcttcttgcgcatgacttcttttgtggaatacgggggtagtttgag 440
            ||||||||||||||| ||||||  ||||| ||| ||||| ||||| || || ||||| ||
Sbjct: 5634 gatggcgtagagcagtttcttgtacatgatttcctttgtagaataaggagggagtttaag 5575

                                                   
Query: 441  ataattggcacacgtcatgacactgggcagatcgtcatc 479
             || || || || |||||||||||||||| ||| |||||
Sbjct: 5574 gtagtttgcgcaagtcatgacactgggcaaatcatcatc 5536



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 574  ccaccagttggaagccgagaagcaccagttacaaactggcagaa 617
            |||||||  ||||||| || ||| ||||||||||| ||||||||
Sbjct: 5441 ccaccaggaggaagcctaggagctccagttacaaattggcagaa 5398
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>tpe|BN000268.1|ATH000268 TPA: TPA_exp: Arabidopsis thaliana mRNA for KAKTUS protein (kak gene)
          Length = 6138

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 82/99 (82%)
 Strand = Plus / Minus

                                                                        
Query: 381  gatggcgtagagcagcttcttgcgcatgacttcttttgtggaatacgggggtagtttgag 440
            ||||||||||||||| ||||||  ||||| ||| ||||| ||||| || || ||||| ||
Sbjct: 5634 gatggcgtagagcagtttcttgtacatgatttcctttgtagaataaggagggagtttaag 5575

                                                   
Query: 441  ataattggcacacgtcatgacactgggcagatcgtcatc 479
             || || || || |||||||||||||||| ||| |||||
Sbjct: 5574 gtagtttgcgcaagtcatgacactgggcaaatcatcatc 5536



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 574  ccaccagttggaagccgagaagcaccagttacaaactggcagaa 617
            |||||||  ||||||| || ||| ||||||||||| ||||||||
Sbjct: 5441 ccaccaggaggaagcctaggagctccagttacaaattggcagaa 5398
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>gb|AY365037.1| Zea mays putative protein 1-like gene, partial sequence
          Length = 530

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                  
Query: 355 agatcaaaagatccacggccttctaggatggcgtagagcagcttcttgcgcatga 409
           |||||||| ||||| |||||||| ||||| || || |||| ||||||||||||||
Sbjct: 185 agatcaaatgatcctcggccttccaggatcgcataaagcaacttcttgcgcatga 131
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>gb|BT019325.1| Zea mays clone Contig1034.F mRNA sequence
          Length = 494

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                  
Query: 430 ggtagtttgagataattggcacacgtcatgacactgggcagatcgtcatccgcag 484
           |||||||| ||||| ||||| || ||||||||||| |||| ||| ||||| ||||
Sbjct: 163 ggtagtttaagatagttggcgcaagtcatgacactaggcaaatcatcatctgcag 109
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>ref|NM_208312.1| Eremothecium gossypii ABR013Wp (ABR013W), mRNA
          Length = 4275

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 436  ttgagataattggcacacgtcatgacactgggcag 470
            ||||| || |||||||| |||||||||||||||||
Sbjct: 4187 ttgaggtagttggcacaggtcatgacactgggcag 4153
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>gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome II,
              complete sequence
          Length = 867699

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 436    ttgagataattggcacacgtcatgacactgggcag 470
              ||||| || |||||||| |||||||||||||||||
Sbjct: 416908 ttgaggtagttggcacaggtcatgacactgggcag 416874
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>ref|XM_503583.1| Yarrowia lipolytica CLIB122, YALI0E05401g predicted mRNA
          Length = 4494

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 451  cacgtcatgacactgggcagat 472
            ||||||||||||||||||||||
Sbjct: 4391 cacgtcatgacactgggcagat 4370
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 93       acgagcgaacaaatccttacga 114
                ||||||||||||||||||||||
Sbjct: 16719624 acgagcgaacaaatccttacga 16719645



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 348      tcaggatagatcaaaagatc 367
                ||||||||||||||||||||
Sbjct: 22583632 tcaggatagatcaaaagatc 22583613
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>dbj|AP005308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0047B10
          Length = 158798

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 93    acgagcgaacaaatccttacga 114
             ||||||||||||||||||||||
Sbjct: 68318 acgagcgaacaaatccttacga 68339
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>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia
              lipolytica
          Length = 4224103

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 451    cacgtcatgacactgggcagat 472
              ||||||||||||||||||||||
Sbjct: 589965 cacgtcatgacactgggcagat 589986
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>emb|AL606932.10| Mouse DNA sequence from clone RP23-247I20 on chromosome 4, complete
              sequence
          Length = 188633

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 42     aagcaaacacagcaacattctc 63
              ||||||||||||||||||||||
Sbjct: 118941 aagcaaacacagcaacattctc 118962
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>ref|XM_389417.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09241.1)
            partial mRNA
          Length = 5598

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 439  agataattggcacacgtcatgacactgggcagatcgtcatc 479
            ||||| ||| |||| |||||||||||||| |||| ||||||
Sbjct: 5507 agatagttgacacatgtcatgacactgggtagatagtcatc 5467
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>gb|AC146568.11| Medicago truncatula clone mth2-101o18, complete sequence
          Length = 129921

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 128   tcctttttatttacaatgtattgga 152
             |||||||||||||| ||||||||||
Sbjct: 33532 tcctttttatttactatgtattgga 33556
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>gb|AC161814.2| Mus musculus BAC clone RP24-120E13 from chromosome 17, complete
             sequence
          Length = 196752

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 120   atgtttactcctttttattta 140
             |||||||||||||||||||||
Sbjct: 90398 atgtttactcctttttattta 90418
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>gb|AC154553.3| Mus musculus BAC clone RP23-416K11 from chromosome 17, complete sequence
          Length = 186842

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 120    atgtttactcctttttattta 140
              |||||||||||||||||||||
Sbjct: 173637 atgtttactcctttttattta 173617
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>gb|AC126670.4| Mus musculus BAC clone RP24-469G14 from chromosome 1, complete sequence
          Length = 200595

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 117   aatatgtttactcctttttattta 140
             |||||||||||| |||||||||||
Sbjct: 93485 aatatgtttacttctttttattta 93508
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>gb|AC122806.4| Mus musculus BAC clone RP23-297C11 from 8, complete sequence
          Length = 184206

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     caaacacagcaacattctca 64
              ||||||||||||||||||||
Sbjct: 146102 caaacacagcaacattctca 146083
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>emb|AL137018.9| Human DNA sequence from clone RP11-133M9 on chromosome 9q13-21.33
             Contains the 3' end of the RORB gene for RAR-related
             orphan receptor B protein (RZRB, ROR-BETA), complete
             sequence
          Length = 157168

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 601   gttacaaactggcagaatgcatgc 624
             |||||||||||||||| |||||||
Sbjct: 50708 gttacaaactggcagactgcatgc 50731
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>emb|Z69727.1|SPAC4G9 S.pombe chromosome I cosmid c4G9
          Length = 40915

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   ttttatttacaatgtattgg 151
             ||||||||||||||||||||
Sbjct: 20189 ttttatttacaatgtattgg 20208
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>emb|AL161593.2|ATCHRIV89 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89
          Length = 199789

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                          
Query: 574    ccaccagttggaagccgagaagcaccagttacaaactggcagaa 617
              |||||||  ||||||| || ||| ||||||||||| ||||||||
Sbjct: 150993 ccaccaggaggaagcctaggagctccagttacaaattggcagaa 151036
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>emb|BX572104.6| Zebrafish DNA sequence from clone DKEY-5K4 in linkage group 1, complete
             sequence
          Length = 114000

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 116   aaatatgtttactcctttttattt 139
             ||||||||||||| ||||||||||
Sbjct: 56683 aaatatgtttacttctttttattt 56706
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>gb|AC079874.21| Oryza sativa chromosome 10 BAC OSJNBa0042H09 genomic sequence, complete
             sequence
          Length = 144191

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    aaacacagcaacattctcaa 65
             ||||||||||||||||||||
Sbjct: 90171 aaacacagcaacattctcaa 90152
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>gb|AC124526.6| Mus musculus BAC clone RP23-406P13 from chromosome 18, complete
             sequence
          Length = 203854

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    aaacacagcaacattctcaa 65
             ||||||||||||||||||||
Sbjct: 36409 aaacacagcaacattctcaa 36390
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>emb|BX294102.9| Zebrafish DNA sequence from clone DKEY-257H21 in linkage group 19,
             complete sequence
          Length = 90082

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   tttttatttacaatgtattg 150
             ||||||||||||||||||||
Sbjct: 14631 tttttatttacaatgtattg 14650
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 46       aaacacagcaacattctcaa 65
                ||||||||||||||||||||
Sbjct: 21519886 aaacacagcaacattctcaa 21519905
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>gb|AC007824.5|AC007824 Drosophila melanogaster, chromosome 3R, region 89E-90A, BAC clone
              BACR02L16, complete sequence
          Length = 190866

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 579    agttggaagccgagaagcac 598
              ||||||||||||||||||||
Sbjct: 136619 agttggaagccgagaagcac 136600
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>gb|AC069558.5|AC069558 Genomic Sequence For Arabidopsis thaliana Clone T5G13 From Chromosome
             IV, complete sequence
          Length = 107740

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 574   ccaccagttggaagccgagaagcaccagttacaaactggcagaa 617
             |||||||  ||||||| || ||| ||||||||||| ||||||||
Sbjct: 14534 ccaccaggaggaagcctaggagctccagttacaaattggcagaa 14491
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>gb|AC069327.7|AC069327 Genomic Sequence For Arabidopsis thaliana Clone T26G08 From Chromosome
             IV, complete sequence
          Length = 94770

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 574   ccaccagttggaagccgagaagcaccagttacaaactggcagaa 617
             |||||||  ||||||| || ||| ||||||||||| ||||||||
Sbjct: 92283 ccaccaggaggaagcctaggagctccagttacaaattggcagaa 92240
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>dbj|AP006450.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1130E07
          Length = 152245

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 348   tcaggatagatcaaaagatc 367
             ||||||||||||||||||||
Sbjct: 25552 tcaggatagatcaaaagatc 25533
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>dbj|AP006162.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1331F11
          Length = 132205

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 348   tcaggatagatcaaaagatc 367
             ||||||||||||||||||||
Sbjct: 98833 tcaggatagatcaaaagatc 98814
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>gb|AE003716.5| Drosophila melanogaster chromosome 3R, section 54 of 118 of the complete
              sequence
          Length = 220035

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 579    agttggaagccgagaagcac 598
              ||||||||||||||||||||
Sbjct: 182664 agttggaagccgagaagcac 182645
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>gb|AC107453.14| Mus musculus chromosome 15, clone RP23-315F3, complete sequence
          Length = 193381

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 612    gcagaatgcatgctgttgat 631
              ||||||||||||||||||||
Sbjct: 166128 gcagaatgcatgctgttgat 166147
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 46       aaacacagcaacattctcaa 65
                ||||||||||||||||||||
Sbjct: 21531549 aaacacagcaacattctcaa 21531568
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>emb|AL928828.6| Zebrafish DNA sequence from clone CH211-30I2, complete sequence
          Length = 169046

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 125  tactcctttttatttacaat 144
            ||||||||||||||||||||
Sbjct: 3546 tactcctttttatttacaat 3565
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>emb|AL035540.1|ATF20M13 Arabidopsis thaliana DNA chromosome 4, BAC clone  F20M13 (ESSA project)
          Length = 91938

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                         
Query: 574   ccaccagttggaagccgagaagcaccagttacaaactggcagaa 617
             |||||||  ||||||| || ||| ||||||||||| ||||||||
Sbjct: 51934 ccaccaggaggaagcctaggagctccagttacaaattggcagaa 51977


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,146,529
Number of Sequences: 3902068
Number of extensions: 5146529
Number of successful extensions: 90923
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90701
Number of HSP's gapped (non-prelim): 210
length of query: 677
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 654
effective length of database: 17,143,297,704
effective search space: 11211716698416
effective search space used: 11211716698416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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