ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags9g08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_476648.1| Oryza sativa (japonica cultivar-group), mRNA Length = 730 Score = 438 bits (221), Expect = e-119 Identities = 341/381 (89%) Strand = Plus / Minus Query: 221 ctagtgcgacttgacgtattcctgcacgatgtgaagaccctccgaatcttcaccatagtc 280 ||||||||| ||||| || |||||||| |||| ||| ||||| || |||||||||||||| Sbjct: 513 ctagtgcgatttgacatagtcctgcactatgttaaggccctcagactcttcaccatagtc 454 Query: 281 cttcacaacgacacatgagcagcccaccacctttcttgccttgccctcagagtcaatctt 340 ||| |||||||| || ||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 453 cttgacaacgacgcaggagcagcccacaaccttccttgccttgccctcagagtcaatctt 394 Query: 341 gcaaagcccagcccactcgccaagagttttggcactaggcacggtgaccaagtgaacgtt 400 ||||||||| ||||||||||||||||| || |||||||||||||| || | ||||||||| Sbjct: 393 gcaaagccctgcccactcgccaagagtcttagcactaggcacggtaacaaggtgaacgtt 334 Query: 401 gtgctcagcacagagtgccttgacaagcttcacataatcaggctggtcgcaatcctcagc 460 |||||||||||| || ||||| || | ||| ||||||||||| |||||||| |||||||| Sbjct: 333 gtgctcagcacacagagccttaaccaacttgacataatcaggttggtcgcagtcctcagc 274 Query: 461 aagcacacagatctgagcagcatgcttctcaatcgcttttgcagcttcacggagtccctt 520 ||||||||| | |||||||||||||||||| || || || ||||| |||||||| ||||| Sbjct: 273 aagcacacaaagctgagcagcatgcttctcgatggccttggcagcctcacggagaccctt 214 Query: 521 gacaaggccatcatgagcacttgacttcttcatcacaagctgcagagcagtcatcaagtc 580 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 213 cacaagcccatcatgagcacttgacttcttcatcacaagctgcagagcagtcatcagatc 154 Query: 581 catgggctctccaagaaccgg 601 ||||||||| ||||||||||| Sbjct: 153 catgggctccccaagaaccgg 133
>dbj|AK121635.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051C16, full insert sequence Length = 734 Score = 438 bits (221), Expect = e-119 Identities = 341/381 (89%) Strand = Plus / Minus Query: 221 ctagtgcgacttgacgtattcctgcacgatgtgaagaccctccgaatcttcaccatagtc 280 ||||||||| ||||| || |||||||| |||| ||| ||||| || |||||||||||||| Sbjct: 517 ctagtgcgatttgacatagtcctgcactatgttaaggccctcagactcttcaccatagtc 458 Query: 281 cttcacaacgacacatgagcagcccaccacctttcttgccttgccctcagagtcaatctt 340 ||| |||||||| || ||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 457 cttgacaacgacgcaggagcagcccacaaccttccttgccttgccctcagagtcaatctt 398 Query: 341 gcaaagcccagcccactcgccaagagttttggcactaggcacggtgaccaagtgaacgtt 400 ||||||||| ||||||||||||||||| || |||||||||||||| || | ||||||||| Sbjct: 397 gcaaagccctgcccactcgccaagagtcttagcactaggcacggtaacaaggtgaacgtt 338 Query: 401 gtgctcagcacagagtgccttgacaagcttcacataatcaggctggtcgcaatcctcagc 460 |||||||||||| || ||||| || | ||| ||||||||||| |||||||| |||||||| Sbjct: 337 gtgctcagcacacagagccttaaccaacttgacataatcaggttggtcgcagtcctcagc 278 Query: 461 aagcacacagatctgagcagcatgcttctcaatcgcttttgcagcttcacggagtccctt 520 ||||||||| | |||||||||||||||||| || || || ||||| |||||||| ||||| Sbjct: 277 aagcacacaaagctgagcagcatgcttctcgatggccttggcagcctcacggagaccctt 218 Query: 521 gacaaggccatcatgagcacttgacttcttcatcacaagctgcagagcagtcatcaagtc 580 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 217 cacaagcccatcatgagcacttgacttcttcatcacaagctgcagagcagtcatcagatc 158 Query: 581 catgggctctccaagaaccgg 601 ||||||||| ||||||||||| Sbjct: 157 catgggctccccaagaaccgg 137
>dbj|AK058680.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-A01, full insert sequence Length = 730 Score = 438 bits (221), Expect = e-119 Identities = 341/381 (89%) Strand = Plus / Minus Query: 221 ctagtgcgacttgacgtattcctgcacgatgtgaagaccctccgaatcttcaccatagtc 280 ||||||||| ||||| || |||||||| |||| ||| ||||| || |||||||||||||| Sbjct: 513 ctagtgcgatttgacatagtcctgcactatgttaaggccctcagactcttcaccatagtc 454 Query: 281 cttcacaacgacacatgagcagcccaccacctttcttgccttgccctcagagtcaatctt 340 ||| |||||||| || ||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 453 cttgacaacgacgcaggagcagcccacaaccttccttgccttgccctcagagtcaatctt 394 Query: 341 gcaaagcccagcccactcgccaagagttttggcactaggcacggtgaccaagtgaacgtt 400 ||||||||| ||||||||||||||||| || |||||||||||||| || | ||||||||| Sbjct: 393 gcaaagccctgcccactcgccaagagtcttagcactaggcacggtaacaaggtgaacgtt 334 Query: 401 gtgctcagcacagagtgccttgacaagcttcacataatcaggctggtcgcaatcctcagc 460 |||||||||||| || ||||| || | ||| ||||||||||| |||||||| |||||||| Sbjct: 333 gtgctcagcacacagagccttaaccaacttgacataatcaggttggtcgcagtcctcagc 274 Query: 461 aagcacacagatctgagcagcatgcttctcaatcgcttttgcagcttcacggagtccctt 520 ||||||||| | |||||||||||||||||| || || || ||||| |||||||| ||||| Sbjct: 273 aagcacacaaagctgagcagcatgcttctcgatggccttggcagcctcacggagaccctt 214 Query: 521 gacaaggccatcatgagcacttgacttcttcatcacaagctgcagagcagtcatcaagtc 580 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 213 cacaagcccatcatgagcacttgacttcttcatcacaagctgcagagcagtcatcagatc 154 Query: 581 catgggctctccaagaaccgg 601 ||||||||| ||||||||||| Sbjct: 153 catgggctccccaagaaccgg 133
>gb|AY109069.1| Zea mays PCO128954 mRNA sequence Length = 755 Score = 377 bits (190), Expect = e-101 Identities = 331/378 (87%) Strand = Plus / Minus Query: 221 ctagtgcgacttgacgtattcctgcacgatgtgaagaccctccgaatcttcaccatagtc 280 ||||||||||||||| || |||||||| |||| ||| ||||| || |||||||| ||||| Sbjct: 551 ctagtgcgacttgacatactcctgcactatgttaaggccctcagattcttcaccgtagtc 492 Query: 281 cttcacaacgacacatgagcagcccaccacctttcttgccttgccctcagagtcaatctt 340 ||| ||||||||||| |||||||| || ||||| |||||||||||||| ||||||||||| Sbjct: 491 cttgacaacgacacaggagcagcctacaaccttccttgccttgccctcggagtcaatctt 432 Query: 341 gcaaagcccagcccactcgccaagagttttggcactaggcacggtgaccaagtgaacgtt 400 ||||||||||||||||||||||||||| || ||| ||| || ||||| | |||||| || Sbjct: 431 gcaaagcccagcccactcgccaagagtcttagcagcaggaacagtgacaaggtgaacatt 372 Query: 401 gtgctcagcacagagtgccttgacaagcttcacataatcaggctggtcgcaatcctcagc 460 ||| ||||||||||| ||||| || ||||| |||||||| |||||||| || |||||||| Sbjct: 371 gtgttcagcacagagcgccttcaccagcttgacataatctggctggtcacagtcctcagc 312 Query: 461 aagcacacagatctgagcagcatgcttctcaatcgcttttgcagcttcacggagtccctt 520 ||| || || | ||||||||||||||||||||| || || ||||| || || || ||||| Sbjct: 311 aagaacgcaaagctgagcagcatgcttctcaatggccttggcagcctcgcgaagaccctt 252 Query: 521 gacaaggccatcatgagcacttgacttcttcatcacaagctgcagagcagtcatcaagtc 580 ||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct: 251 cacaagtccatcatgagcacttgacttcttcatcaccagctgcagcgcagtcatcaagtc 192 Query: 581 catgggctctccaagaac 598 ||| |||||||||||||| Sbjct: 191 cattggctctccaagaac 174
>gb|AF067732.1|AF067732 Hordeum vulgare ribosomal protein S12 (rps12) mRNA, complete cds Length = 760 Score = 377 bits (190), Expect = e-101 Identities = 325/370 (87%) Strand = Plus / Minus Query: 228 gacttgacgtattcctgcacgatgtgaagaccctccgaatcttcaccatagtccttcaca 287 |||||||| || | ||||||||||| ||| ||||| || ||||||||||||||||| ||| Sbjct: 523 gacttgacatactgctgcacgatgttaaggccctcggattcttcaccatagtccttgaca 464 Query: 288 acgacacatgagcagcccaccacctttcttgccttgccctcagagtcaatcttgcaaagc 347 || | || |||||||| || ||||| |||||||||||||||| ||| |||||||||||| Sbjct: 463 acaatgcaagagcagcctacaaccttccttgccttgccctcagtgtcgatcttgcaaagc 404 Query: 348 ccagcccactcgccaagagttttggcactaggcacggtgaccaagtgaacgttgtgctca 407 || |||||||| || |||||||| ||||| ||||| || |||| |||||| ||||||||| Sbjct: 403 cctgcccactctccgagagttttagcacttggcacagtaaccaggtgaacattgtgctca 344 Query: 408 gcacagagtgccttgacaagcttcacataatcaggctggtcgcaatcctcagcaagcaca 467 || || |||||||| ||||||||||| |||||||||||||| ||||||||||| |||||| Sbjct: 343 gcgcatagtgccttaacaagcttcacgtaatcaggctggtcacaatcctcagccagcaca 284 Query: 468 cagatctgagcagcatgcttctcaatcgcttttgcagcttcacggagtcccttgacaagg 527 || | ||||||||||||||||||||| | || ||||| |||||||| ||||| |||||| Sbjct: 283 caaagctgagcagcatgcttctcaatggacttggcagcctcacggagccccttcacaagg 224 Query: 528 ccatcatgagcacttgacttcttcatcacaagctgcagagcagtcatcaagtccatgggc 587 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 223 ccatcatgagcacttgacttcttcatgacaagctgtagagcagtcatcaagtccattggc 164 Query: 588 tctccaagaa 597 || ||||||| Sbjct: 163 tcaccaagaa 154
>ref|XM_477173.1| Oryza sativa (japonica cultivar-group), mRNA Length = 751 Score = 375 bits (189), Expect = e-100 Identities = 333/381 (87%) Strand = Plus / Minus Query: 221 ctagtgcgacttgacgtattcctgcacgatgtgaagaccctccgaatcttcaccatagtc 280 |||||| |||||||| || ||||| || |||| || ||||| || |||||||| |||| Sbjct: 536 ctagtgggacttgacatagtcctggactatgttgaggccctctgactcttcaccgaagtc 477 Query: 281 cttcacaacgacacatgagcagcccaccacctttcttgccttgccctcagagtcaatctt 340 ||| |||||||| || |||||||| || ||||| || |||||||||||||| |||||||| Sbjct: 476 cttgacaacgacgcaggagcagcctacgaccttcctcgccttgccctcagaatcaatctt 417 Query: 341 gcaaagcccagcccactcgccaagagttttggcactaggcacggtgaccaagtgaacgtt 400 ||||||||| |||||||||||||||||||| |||||||||||||| || | |||||| || Sbjct: 416 gcaaagccctgcccactcgccaagagttttagcactaggcacggtaacgaggtgaacatt 357 Query: 401 gtgctcagcacagagtgccttgacaagcttcacataatcaggctggtcgcaatcctcagc 460 ||||||||| |||||||||||||| | ||| ||||||||||||||||| || |||||||| Sbjct: 356 gtgctcagcgcagagtgccttgaccaacttgacataatcaggctggtcacagtcctcagc 297 Query: 461 aagcacacagatctgagcagcatgcttctcaatcgcttttgcagcttcacggagtccctt 520 |||||| || | |||||| |||||||||||||| || || || || |||||||| ||||| Sbjct: 296 aagcacgcaaagctgagcggcatgcttctcaatggccttggccgcctcacggagcccctt 237 Query: 521 gacaaggccatcatgagcacttgacttcttcatcacaagctgcagagcagtcatcaagtc 580 || || ||||||||||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct: 236 cacgagcccatcatgagcgcttgacttcttcatcacaagctgcagagcagtcatcaggtc 177 Query: 581 catgggctctccaagaaccgg 601 ||| ||||||||||||||||| Sbjct: 176 catcggctctccaagaaccgg 156
>dbj|AK121720.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033080B09, full insert sequence Length = 754 Score = 375 bits (189), Expect = e-100 Identities = 333/381 (87%) Strand = Plus / Minus Query: 221 ctagtgcgacttgacgtattcctgcacgatgtgaagaccctccgaatcttcaccatagtc 280 |||||| |||||||| || ||||| || |||| || ||||| || |||||||| |||| Sbjct: 533 ctagtgggacttgacatagtcctggactatgttgaggccctctgactcttcaccgaagtc 474 Query: 281 cttcacaacgacacatgagcagcccaccacctttcttgccttgccctcagagtcaatctt 340 ||| |||||||| || |||||||| || ||||| || |||||||||||||| |||||||| Sbjct: 473 cttgacaacgacgcaggagcagcctacgaccttcctcgccttgccctcagaatcaatctt 414 Query: 341 gcaaagcccagcccactcgccaagagttttggcactaggcacggtgaccaagtgaacgtt 400 ||||||||| |||||||||||||||||||| |||||||||||||| || | |||||| || Sbjct: 413 gcaaagccctgcccactcgccaagagttttagcactaggcacggtaacgaggtgaacatt 354 Query: 401 gtgctcagcacagagtgccttgacaagcttcacataatcaggctggtcgcaatcctcagc 460 ||||||||| |||||||||||||| | ||| ||||||||||||||||| || |||||||| Sbjct: 353 gtgctcagcgcagagtgccttgaccaacttgacataatcaggctggtcacagtcctcagc 294 Query: 461 aagcacacagatctgagcagcatgcttctcaatcgcttttgcagcttcacggagtccctt 520 |||||| || | |||||| |||||||||||||| || || || || |||||||| ||||| Sbjct: 293 aagcacgcaaagctgagcggcatgcttctcaatggccttggccgcctcacggagcccctt 234 Query: 521 gacaaggccatcatgagcacttgacttcttcatcacaagctgcagagcagtcatcaagtc 580 || || ||||||||||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct: 233 cacgagcccatcatgagcgcttgacttcttcatcacaagctgcagagcagtcatcaggtc 174 Query: 581 catgggctctccaagaaccgg 601 ||| ||||||||||||||||| Sbjct: 173 catcggctctccaagaaccgg 153
>dbj|AK059090.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-B10, full insert sequence Length = 751 Score = 375 bits (189), Expect = e-100 Identities = 333/381 (87%) Strand = Plus / Minus Query: 221 ctagtgcgacttgacgtattcctgcacgatgtgaagaccctccgaatcttcaccatagtc 280 |||||| |||||||| || ||||| || |||| || ||||| || |||||||| |||| Sbjct: 536 ctagtgggacttgacatagtcctggactatgttgaggccctctgactcttcaccgaagtc 477 Query: 281 cttcacaacgacacatgagcagcccaccacctttcttgccttgccctcagagtcaatctt 340 ||| |||||||| || |||||||| || ||||| || |||||||||||||| |||||||| Sbjct: 476 cttgacaacgacgcaggagcagcctacgaccttcctcgccttgccctcagaatcaatctt 417 Query: 341 gcaaagcccagcccactcgccaagagttttggcactaggcacggtgaccaagtgaacgtt 400 ||||||||| |||||||||||||||||||| |||||||||||||| || | |||||| || Sbjct: 416 gcaaagccctgcccactcgccaagagttttagcactaggcacggtaacgaggtgaacatt 357 Query: 401 gtgctcagcacagagtgccttgacaagcttcacataatcaggctggtcgcaatcctcagc 460 ||||||||| |||||||||||||| | ||| ||||||||||||||||| || |||||||| Sbjct: 356 gtgctcagcgcagagtgccttgaccaacttgacataatcaggctggtcacagtcctcagc 297 Query: 461 aagcacacagatctgagcagcatgcttctcaatcgcttttgcagcttcacggagtccctt 520 |||||| || | |||||| |||||||||||||| || || || || |||||||| ||||| Sbjct: 296 aagcacgcaaagctgagcggcatgcttctcaatggccttggccgcctcacggagcccctt 237 Query: 521 gacaaggccatcatgagcacttgacttcttcatcacaagctgcagagcagtcatcaagtc 580 || || ||||||||||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct: 236 cacgagcccatcatgagcgcttgacttcttcatcacaagctgcagagcagtcatcaggtc 177 Query: 581 catgggctctccaagaaccgg 601 ||| ||||||||||||||||| Sbjct: 176 catcggctctccaagaaccgg 156
>gb|BT018309.1| Zea mays clone EL01T0206H08.c mRNA sequence Length = 608 Score = 361 bits (182), Expect = 2e-96 Identities = 344/398 (86%) Strand = Plus / Minus Query: 221 ctagtgcgacttgacgtattcctgcacgatgtgaagaccctccgaatcttcaccatagtc 280 |||||| ||||||||||| ||||| || |||| ||| ||||| || ||||| |||||||| Sbjct: 501 ctagtgtgacttgacgtactcctgaactatgttaaggccctcagattcttcgccatagtc 442 Query: 281 cttcacaacgacacatgagcagcccaccacctttcttgccttgccctcagagtcaatctt 340 ||| || || ||||| ||||| ||||| ||||| || |||||||||||||| |||||||| Sbjct: 441 cttgacgacaacacaggagcaacccacaaccttcctcgccttgccctcagaatcaatctt 382 Query: 341 gcaaagcccagcccactcgccaagagttttggcactaggcacggtgaccaagtgaacgtt 400 ||||||||||| ||| |||||||||||||| || |||||||| || |||| ||||||||| Sbjct: 381 gcaaagcccagaccattcgccaagagttttagcgctaggcacagtaaccaggtgaacgtt 322 Query: 401 gtgctcagcacagagtgccttgacaagcttcacataatcaggctggtcgcaatcctcagc 460 |||||||| || || ||||| || ||||| ||||||||||||||||| || ||||| || Sbjct: 321 gtgctcagagcaaagagccttcaccagcttgacataatcaggctggtcacagtcctccgc 262 Query: 461 aagcacacagatctgagcagcatgcttctcaatcgcttttgcagcttcacggagtccctt 520 |||||| || | ||||||||||||||||||||| ||||| ||||| ||||| || ||||| Sbjct: 261 aagcacgcaaagctgagcagcatgcttctcaattgctttggcagcctcacgaagaccctt 202 Query: 521 gacaaggccatcatgagcacttgacttcttcatcacaagctgcagagcagtcatcaagtc 580 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 201 aacaaggccatcatgagcacccgacttcttcatgacaagctgcagagcagtcatcaagtc 142 Query: 581 catgggctctccaagaaccggaattggggccgcaactg 618 ||| ||||| ||||| ||||| | |||||| |||||| Sbjct: 141 catcggctccccaaggaccggggtaggggcctcaactg 104
>gb|AY104036.1| Zea mays PCO068483 mRNA sequence Length = 845 Score = 359 bits (181), Expect = 8e-96 Identities = 331/381 (86%) Strand = Plus / Minus Query: 221 ctagtgcgacttgacgtattcctgcacgatgtgaagaccctccgaatcttcaccatagtc 280 ||||||||| |||||||| |||||||| |||| ||| || || || ||||| || ||||| Sbjct: 581 ctagtgcgatttgacgtactcctgcactatgttaaggccttcagattcttcgccgtagtc 522 Query: 281 cttcacaacgacacatgagcagcccaccacctttcttgccttgccctcagagtcaatctt 340 ||| ||||| ||||| |||||||| || ||||| || ||||||||||||||||| ||||| Sbjct: 521 cttgacaacaacacaggagcagcctacaaccttcctcgccttgccctcagagtcgatctt 462 Query: 341 gcaaagcccagcccactcgccaagagttttggcactaggcacggtgaccaagtgaacgtt 400 |||||||||||||||||| |||||||||||||| |||||||| || |||| ||| || || Sbjct: 461 gcaaagcccagcccactctccaagagttttggcgctaggcacagtaaccaggtggacatt 402 Query: 401 gtgctcagcacagagtgccttgacaagcttcacataatcaggctggtcgcaatcctcagc 460 ||||||||| ||||| ||||| || ||||| |||||||||||||||||||| ||||| || Sbjct: 401 gtgctcagcgcagagagccttcaccagcttgacataatcaggctggtcgcagtcctcggc 342 Query: 461 aagcacacagatctgagcagcatgcttctcaatcgcttttgcagcttcacggagtccctt 520 |||||| |||| |||||| ||||||||||| || ||||| ||||| ||||| || ||||| Sbjct: 341 aagcacgcagagctgagcggcatgcttctcgatggctttggcagcctcacgaagaccctt 282 Query: 521 gacaaggccatcatgagcacttgacttcttcatcacaagctgcagagcagtcatcaagtc 580 ||||||||||||||||||| |||||||||||| || |||||||| |||||||||| ||| Sbjct: 281 cacaaggccatcatgagcacctgacttcttcatgacgagctgcagggcagtcatcaggtc 222 Query: 581 catgggctctccaagaaccgg 601 ||| || || ||||||||||| Sbjct: 221 catcggttccccaagaaccgg 201
>gb|BT017581.1| Zea mays clone EL01N0429E05.c mRNA sequence Length = 747 Score = 335 bits (169), Expect = 1e-88 Identities = 328/381 (86%) Strand = Plus / Minus Query: 221 ctagtgcgacttgacgtattcctgcacgatgtgaagaccctccgaatcttcaccatagtc 280 ||||||||| |||||||| |||||||| |||| ||| || || || ||||| || ||||| Sbjct: 488 ctagtgcgatttgacgtactcctgcactatgttaaggccttcagattcttcgccgtagtc 429 Query: 281 cttcacaacgacacatgagcagcccaccacctttcttgccttgccctcagagtcaatctt 340 ||| ||||| ||||| |||||||| || ||||| || ||||||||||||||||| ||||| Sbjct: 428 cttgacaacaacacaggagcagcctacaaccttcctcgccttgccctcagagtcgatctt 369 Query: 341 gcaaagcccagcccactcgccaagagttttggcactaggcacggtgaccaagtgaacgtt 400 |||||||||||||||||| |||||||||||||| |||||||| || |||| ||| || || Sbjct: 368 gcaaagcccagcccactctccaagagttttggcgctaggcacagtaaccaggtggacatt 309 Query: 401 gtgctcagcacagagtgccttgacaagcttcacataatcaggctggtcgcaatcctcagc 460 ||||||||| ||||| ||||| || ||||| |||||||||||||||||||| ||||| || Sbjct: 308 gtgctcagcgcagagagccttcaccagcttgacataatcaggctggtcgcagtcctcggc 249 Query: 461 aagcacacagatctgagcagcatgcttctcaatcgcttttgcagcttcacggagtccctt 520 |||||| |||| |||||| ||||||||||| || ||||| ||||| ||||| || ||||| Sbjct: 248 aagcacgcagagctgagcggcatgcttctcgatggctttggcagcctcacgaagaccctt 189 Query: 521 gacaaggccatcatgagcacttgacttcttcatcacaagctgcagagcagtcatcaagtc 580 ||||||||||||| | | | |||||||||||| || |||||||| |||||||||| ||| Sbjct: 188 cacaaggccatcatcaccccctgacttcttcatgacgagctgcagggcagtcatcaggtc 129 Query: 581 catgggctctccaagaaccgg 601 ||| || || ||||||||||| Sbjct: 128 catcggttccccaagaaccgg 108
>gb|BT017926.1| Zea mays clone EL01N0519G01.c mRNA sequence Length = 580 Score = 307 bits (155), Expect = 3e-80 Identities = 296/343 (86%) Strand = Plus / Minus Query: 221 ctagtgcgacttgacgtattcctgcacgatgtgaagaccctccgaatcttcaccatagtc 280 ||||||||||||||| || |||||||| |||| ||| ||||| || |||||||| ||||| Sbjct: 351 ctagtgcgacttgacatactcctgcactatgttaaggccctcagattcttcaccgtagtc 292 Query: 281 cttcacaacgacacatgagcagcccaccacctttcttgccttgccctcagagtcaatctt 340 ||| || ||||| || |||||||| || ||||| |||||||||||||||||||||||||| Sbjct: 291 cttgacgacgacgcaggagcagcctacaaccttccttgccttgccctcagagtcaatctt 232 Query: 341 gcaaagcccagcccactcgccaagagttttggcactaggcacggtgaccaagtgaacgtt 400 ||||||||||||||||||||||||||| || || ||| || ||||||| |||||| || Sbjct: 231 gcaaagcccagcccactcgccaagagtcttagcggcaggaacagtgaccaggtgaacatt 172 Query: 401 gtgctcagcacagagtgccttgacaagcttcacataatcaggctggtcgcaatcctcagc 460 ||||||||| ||||||||||| || ||||| || ||||| |||||||| || |||||||| Sbjct: 171 gtgctcagcgcagagtgccttcaccagcttgacgtaatctggctggtcacagtcctcagc 112 Query: 461 aagcacacagatctgagcagcatgcttctcaatcgcttttgcagcttcacggagtccctt 520 |||||| || | |||||| || |||||||| || || || ||||| |||||||| ||||| Sbjct: 111 aagcacgcaaagctgagcggcgtgcttctcgatggccttggcagcctcacggagaccctt 52 Query: 521 gacaaggccatcatgagcacttgacttcttcatcacaagctgc 563 ||||| || |||||||||||||||||||||||||| |||||| Sbjct: 51 cacaagtccgtcatgagcacttgacttcttcatcacgagctgc 9
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 291 bits (147), Expect = 2e-75 Identities = 225/251 (89%) Strand = Plus / Minus Query: 351 gcccactcgccaagagttttggcactaggcacggtgaccaagtgaacgttgtgctcagca 410 ||||||||||||||||| || |||||||||||||| || | ||||||||||||||||||| Sbjct: 2647394 gcccactcgccaagagtcttagcactaggcacggtaacaaggtgaacgttgtgctcagca 2647335 Query: 411 cagagtgccttgacaagcttcacataatcaggctggtcgcaatcctcagcaagcacacag 470 || || ||||| || | ||| ||||||||||| |||||||| ||||||||||||||||| Sbjct: 2647334 cacagagccttaaccaacttgacataatcaggttggtcgcagtcctcagcaagcacacaa 2647275 Query: 471 atctgagcagcatgcttctcaatcgcttttgcagcttcacggagtcccttgacaaggcca 530 | |||||||||||||||||| || || || ||||| |||||||| ||||| ||||| ||| Sbjct: 2647274 agctgagcagcatgcttctcgatggccttggcagcctcacggagacccttcacaagccca 2647215 Query: 531 tcatgagcacttgacttcttcatcacaagctgcagagcagtcatcaagtccatgggctct 590 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 2647214 tcatgagcacttgacttcttcatcacaagctgcagagcagtcatcagatccatgggctcc 2647155 Query: 591 ccaagaaccgg 601 ||||||||||| Sbjct: 2647154 ccaagaaccgg 2647144 Score = 283 bits (143), Expect = 4e-73 Identities = 224/251 (89%) Strand = Plus / Plus Query: 351 gcccactcgccaagagttttggcactaggcacggtgaccaagtgaacgttgtgctcagca 410 |||||||||||||||||||| |||||||||||||| || | |||||| ||||||||||| Sbjct: 7266012 gcccactcgccaagagttttagcactaggcacggtaacgaggtgaacattgtgctcagcg 7266071 Query: 411 cagagtgccttgacaagcttcacataatcaggctggtcgcaatcctcagcaagcacacag 470 |||||||||||||| | ||| ||||||||||||||||| || |||||||||||||| || Sbjct: 7266072 cagagtgccttgaccaacttgacataatcaggctggtcacagtcctcagcaagcacgcaa 7266131 Query: 471 atctgagcagcatgcttctcaatcgcttttgcagcttcacggagtcccttgacaaggcca 530 | |||||| |||||||||||||| || || || || |||||||| ||||| || || ||| Sbjct: 7266132 agctgagcggcatgcttctcaatggccttggccgcctcacggagccccttcacgagccca 7266191 Query: 531 tcatgagcacttgacttcttcatcacaagctgcagagcagtcatcaagtccatgggctct 590 |||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||| Sbjct: 7266192 tcatgagcgcttgacttcttcatcacaagctgcagagcagtcatcaggtccatcggctct 7266251 Query: 591 ccaagaaccgg 601 ||||||||||| Sbjct: 7266252 ccaagaaccgg 7266262 Score = 95.6 bits (48), Expect = 2e-16 Identities = 63/68 (92%) Strand = Plus / Minus Query: 280 ccttcacaacgacacatgagcagcccaccacctttcttgccttgccctcagagtcaatct 339 |||| |||||||| || ||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 2648109 ccttgacaacgacgcaggagcagcccacaaccttccttgccttgccctcagagtcaatct 2648050 Query: 340 tgcaaagc 347 |||||||| Sbjct: 2648049 tgcaaagc 2648042 Score = 71.9 bits (36), Expect = 3e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 280 ccttcacaacgacacatgagcagcccaccacctttcttgccttgccctcagagtcaatct 339 |||| |||||||| || |||||||| || ||||| || |||||||||||||| ||||||| Sbjct: 7265680 ccttgacaacgacgcaggagcagcctacgaccttcctcgccttgccctcagaatcaatct 7265739 Query: 340 tgcaaagc 347 |||||||| Sbjct: 7265740 tgcaaagc 7265747 Score = 60.0 bits (30), Expect = 1e-05 Identities = 54/62 (87%) Strand = Plus / Minus Query: 221 ctagtgcgacttgacgtattcctgcacgatgtgaagaccctccgaatcttcaccatagtc 280 ||||||||| ||||| || |||||||| |||| ||| ||||| || |||||||||||||| Sbjct: 2648258 ctagtgcgatttgacatagtcctgcactatgttaaggccctcagactcttcaccatagtc 2648199 Query: 281 ct 282 || Sbjct: 2648198 ct 2648197
>dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1027_G06 Length = 121885 Score = 291 bits (147), Expect = 2e-75 Identities = 225/251 (89%) Strand = Plus / Minus Query: 351 gcccactcgccaagagttttggcactaggcacggtgaccaagtgaacgttgtgctcagca 410 ||||||||||||||||| || |||||||||||||| || | ||||||||||||||||||| Sbjct: 73112 gcccactcgccaagagtcttagcactaggcacggtaacaaggtgaacgttgtgctcagca 73053 Query: 411 cagagtgccttgacaagcttcacataatcaggctggtcgcaatcctcagcaagcacacag 470 || || ||||| || | ||| ||||||||||| |||||||| ||||||||||||||||| Sbjct: 73052 cacagagccttaaccaacttgacataatcaggttggtcgcagtcctcagcaagcacacaa 72993 Query: 471 atctgagcagcatgcttctcaatcgcttttgcagcttcacggagtcccttgacaaggcca 530 | |||||||||||||||||| || || || ||||| |||||||| ||||| ||||| ||| Sbjct: 72992 agctgagcagcatgcttctcgatggccttggcagcctcacggagacccttcacaagccca 72933 Query: 531 tcatgagcacttgacttcttcatcacaagctgcagagcagtcatcaagtccatgggctct 590 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 72932 tcatgagcacttgacttcttcatcacaagctgcagagcagtcatcagatccatgggctcc 72873 Query: 591 ccaagaaccgg 601 ||||||||||| Sbjct: 72872 ccaagaaccgg 72862 Score = 95.6 bits (48), Expect = 2e-16 Identities = 63/68 (92%) Strand = Plus / Minus Query: 280 ccttcacaacgacacatgagcagcccaccacctttcttgccttgccctcagagtcaatct 339 |||| |||||||| || ||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 73827 ccttgacaacgacgcaggagcagcccacaaccttccttgccttgccctcagagtcaatct 73768 Query: 340 tgcaaagc 347 |||||||| Sbjct: 73767 tgcaaagc 73760 Score = 60.0 bits (30), Expect = 1e-05 Identities = 54/62 (87%) Strand = Plus / Minus Query: 221 ctagtgcgacttgacgtattcctgcacgatgtgaagaccctccgaatcttcaccatagtc 280 ||||||||| ||||| || |||||||| |||| ||| ||||| || |||||||||||||| Sbjct: 73976 ctagtgcgatttgacatagtcctgcactatgttaaggccctcagactcttcaccatagtc 73917 Query: 281 ct 282 || Sbjct: 73916 ct 73915
>ref|XM_477174.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2015 Score = 283 bits (143), Expect = 4e-73 Identities = 224/251 (89%) Strand = Plus / Minus Query: 351 gcccactcgccaagagttttggcactaggcacggtgaccaagtgaacgttgtgctcagca 410 |||||||||||||||||||| |||||||||||||| || | |||||| ||||||||||| Sbjct: 1335 gcccactcgccaagagttttagcactaggcacggtaacgaggtgaacattgtgctcagcg 1276 Query: 411 cagagtgccttgacaagcttcacataatcaggctggtcgcaatcctcagcaagcacacag 470 |||||||||||||| | ||| ||||||||||||||||| || |||||||||||||| || Sbjct: 1275 cagagtgccttgaccaacttgacataatcaggctggtcacagtcctcagcaagcacgcaa 1216 Query: 471 atctgagcagcatgcttctcaatcgcttttgcagcttcacggagtcccttgacaaggcca 530 | |||||| |||||||||||||| || || || || |||||||| ||||| || || ||| Sbjct: 1215 agctgagcggcatgcttctcaatggccttggccgcctcacggagccccttcacgagccca 1156 Query: 531 tcatgagcacttgacttcttcatcacaagctgcagagcagtcatcaagtccatgggctct 590 |||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||| Sbjct: 1155 tcatgagcgcttgacttcttcatcacaagctgcagagcagtcatcaggtccatcggctct 1096 Query: 591 ccaagaaccgg 601 ||||||||||| Sbjct: 1095 ccaagaaccgg 1085 Score = 71.9 bits (36), Expect = 3e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 280 ccttcacaacgacacatgagcagcccaccacctttcttgccttgccctcagagtcaatct 339 |||| |||||||| || |||||||| || ||||| || |||||||||||||| ||||||| Sbjct: 1667 ccttgacaacgacgcaggagcagcctacgaccttcctcgccttgccctcagaatcaatct 1608 Query: 340 tgcaaagc 347 |||||||| Sbjct: 1607 tgcaaagc 1600
>dbj|AP005764.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0016A21 Length = 144076 Score = 283 bits (143), Expect = 4e-73 Identities = 224/251 (89%) Strand = Plus / Plus Query: 351 gcccactcgccaagagttttggcactaggcacggtgaccaagtgaacgttgtgctcagca 410 |||||||||||||||||||| |||||||||||||| || | |||||| ||||||||||| Sbjct: 106496 gcccactcgccaagagttttagcactaggcacggtaacgaggtgaacattgtgctcagcg 106555 Query: 411 cagagtgccttgacaagcttcacataatcaggctggtcgcaatcctcagcaagcacacag 470 |||||||||||||| | ||| ||||||||||||||||| || |||||||||||||| || Sbjct: 106556 cagagtgccttgaccaacttgacataatcaggctggtcacagtcctcagcaagcacgcaa 106615 Query: 471 atctgagcagcatgcttctcaatcgcttttgcagcttcacggagtcccttgacaaggcca 530 | |||||| |||||||||||||| || || || || |||||||| ||||| || || ||| Sbjct: 106616 agctgagcggcatgcttctcaatggccttggccgcctcacggagccccttcacgagccca 106675 Query: 531 tcatgagcacttgacttcttcatcacaagctgcagagcagtcatcaagtccatgggctct 590 |||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||| Sbjct: 106676 tcatgagcgcttgacttcttcatcacaagctgcagagcagtcatcaggtccatcggctct 106735 Query: 591 ccaagaaccgg 601 ||||||||||| Sbjct: 106736 ccaagaaccgg 106746 Score = 71.9 bits (36), Expect = 3e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 280 ccttcacaacgacacatgagcagcccaccacctttcttgccttgccctcagagtcaatct 339 |||| |||||||| || |||||||| || ||||| || |||||||||||||| ||||||| Sbjct: 106164 ccttgacaacgacgcaggagcagcctacgaccttcctcgccttgccctcagaatcaatct 106223 Query: 340 tgcaaagc 347 |||||||| Sbjct: 106224 tgcaaagc 106231
>dbj|AK071026.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078K20, full insert sequence Length = 2015 Score = 283 bits (143), Expect = 4e-73 Identities = 224/251 (89%) Strand = Plus / Minus Query: 351 gcccactcgccaagagttttggcactaggcacggtgaccaagtgaacgttgtgctcagca 410 |||||||||||||||||||| |||||||||||||| || | |||||| ||||||||||| Sbjct: 1335 gcccactcgccaagagttttagcactaggcacggtaacgaggtgaacattgtgctcagcg 1276 Query: 411 cagagtgccttgacaagcttcacataatcaggctggtcgcaatcctcagcaagcacacag 470 |||||||||||||| | ||| ||||||||||||||||| || |||||||||||||| || Sbjct: 1275 cagagtgccttgaccaacttgacataatcaggctggtcacagtcctcagcaagcacgcaa 1216 Query: 471 atctgagcagcatgcttctcaatcgcttttgcagcttcacggagtcccttgacaaggcca 530 | |||||| |||||||||||||| || || || || |||||||| ||||| || || ||| Sbjct: 1215 agctgagcggcatgcttctcaatggccttggccgcctcacggagccccttcacgagccca 1156 Query: 531 tcatgagcacttgacttcttcatcacaagctgcagagcagtcatcaagtccatgggctct 590 |||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||| Sbjct: 1155 tcatgagcgcttgacttcttcatcacaagctgcagagcagtcatcaggtccatcggctct 1096 Query: 591 ccaagaaccgg 601 ||||||||||| Sbjct: 1095 ccaagaaccgg 1085 Score = 71.9 bits (36), Expect = 3e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 280 ccttcacaacgacacatgagcagcccaccacctttcttgccttgccctcagagtcaatct 339 |||| |||||||| || |||||||| || ||||| || |||||||||||||| ||||||| Sbjct: 1667 ccttgacaacgacgcaggagcagcctacgaccttcctcgccttgccctcagaatcaatct 1608 Query: 340 tgcaaagc 347 |||||||| Sbjct: 1607 tgcaaagc 1600
>emb|BX819283.1|CNS0A9Q1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB63ZH09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 702 Score = 123 bits (62), Expect = 8e-25 Identities = 170/206 (82%) Strand = Plus / Minus Query: 288 acgacacatgagcagcccaccacctttcttgccttgccctcagagtcaatcttgcaaagc 347 |||| ||||||||| || || ||||| ||||| ||||||||||| |||||||||||||| Sbjct: 425 acgagacatgagcatccaacaaccttccttgcattgccctcagaatcaatcttgcaaaga 366 Query: 348 ccagcccactcgccaagagttttggcactaggcacggtgaccaagtgaacgttgtgctca 407 |||||||| ||||| || ||||||||||| || || || | ||| | | | |||| ||| Sbjct: 365 ccagcccattcgccgagtgttttggcacttggaacagtaagcaatttgatgctgtggtca 306 Query: 408 gcacagagtgccttgacaagcttcacataatcaggctggtcgcaatcctcagcaagcaca 467 || || || || || |||||||||||||||||||| |||| |||||| ||||| || ||| Sbjct: 305 gcgcaaagagctttaacaagcttcacataatcaggttggttgcaatcttcagccaggaca 246 Query: 468 cagatctgagcagcatgcttctcaat 493 |||| ||||||| | |||||||||| Sbjct: 245 cagagctgagcattacgcttctcaat 220
>ref|NM_179850.1| Arabidopsis thaliana structural constituent of ribosome AT2G32060 transcript variant AT2G32060.3 mRNA, complete cds Length = 694 Score = 115 bits (58), Expect = 2e-22 Identities = 169/206 (82%) Strand = Plus / Minus Query: 288 acgacacatgagcagcccaccacctttcttgccttgccctcagagtcaatcttgcaaagc 347 |||| ||||||||| || || ||||| ||||| ||||||||||| |||||||||||||| Sbjct: 444 acgagacatgagcatccaacaaccttccttgcattgccctcagaatcaatcttgcaaaga 385 Query: 348 ccagcccactcgccaagagttttggcactaggcacggtgaccaagtgaacgttgtgctca 407 |||||||| ||||| || ||||||||||| || || || | ||| | | | |||| ||| Sbjct: 384 ccagcccattcgccgagtgttttggcacttggaacagtaagcaatttgatgctgtggtca 325 Query: 408 gcacagagtgccttgacaagcttcacataatcaggctggtcgcaatcctcagcaagcaca 467 || || || || || |||||||| ||||||||||| |||| |||||| ||||| || ||| Sbjct: 324 gcgcaaagagctttaacaagcttgacataatcaggttggttgcaatcttcagccaggaca 265 Query: 468 cagatctgagcagcatgcttctcaat 493 |||| ||||||| | |||||||||| Sbjct: 264 cagagctgagcattacgcttctcaat 239
>ref|NM_128766.4| Arabidopsis thaliana structural constituent of ribosome AT2G32060 transcript variant AT2G32060.1 mRNA, complete cds Length = 759 Score = 115 bits (58), Expect = 2e-22 Identities = 169/206 (82%) Strand = Plus / Minus Query: 288 acgacacatgagcagcccaccacctttcttgccttgccctcagagtcaatcttgcaaagc 347 |||| ||||||||| || || ||||| ||||| ||||||||||| |||||||||||||| Sbjct: 482 acgagacatgagcatccaacaaccttccttgcattgccctcagaatcaatcttgcaaaga 423 Query: 348 ccagcccactcgccaagagttttggcactaggcacggtgaccaagtgaacgttgtgctca 407 |||||||| ||||| || ||||||||||| || || || | ||| | | | |||| ||| Sbjct: 422 ccagcccattcgccgagtgttttggcacttggaacagtaagcaatttgatgctgtggtca 363 Query: 408 gcacagagtgccttgacaagcttcacataatcaggctggtcgcaatcctcagcaagcaca 467 || || || || || |||||||| ||||||||||| |||| |||||| ||||| || ||| Sbjct: 362 gcgcaaagagctttaacaagcttgacataatcaggttggttgcaatcttcagccaggaca 303 Query: 468 cagatctgagcagcatgcttctcaat 493 |||| ||||||| | |||||||||| Sbjct: 302 cagagctgagcattacgcttctcaat 277
>ref|NM_179849.2| Arabidopsis thaliana structural constituent of ribosome AT2G32060 transcript variant AT2G32060.2 mRNA, complete cds Length = 723 Score = 115 bits (58), Expect = 2e-22 Identities = 169/206 (82%) Strand = Plus / Minus Query: 288 acgacacatgagcagcccaccacctttcttgccttgccctcagagtcaatcttgcaaagc 347 |||| ||||||||| || || ||||| ||||| ||||||||||| |||||||||||||| Sbjct: 446 acgagacatgagcatccaacaaccttccttgcattgccctcagaatcaatcttgcaaaga 387 Query: 348 ccagcccactcgccaagagttttggcactaggcacggtgaccaagtgaacgttgtgctca 407 |||||||| ||||| || ||||||||||| || || || | ||| | | | |||| ||| Sbjct: 386 ccagcccattcgccgagtgttttggcacttggaacagtaagcaatttgatgctgtggtca 327 Query: 408 gcacagagtgccttgacaagcttcacataatcaggctggtcgcaatcctcagcaagcaca 467 || || || || || |||||||| ||||||||||| |||| |||||| ||||| || ||| Sbjct: 326 gcgcaaagagctttaacaagcttgacataatcaggttggttgcaatcttcagccaggaca 267 Query: 468 cagatctgagcagcatgcttctcaat 493 |||| ||||||| | |||||||||| Sbjct: 266 cagagctgagcattacgcttctcaat 241
>gb|AY133636.1| Arabidopsis thaliana At2g32060/F22D22.19 mRNA, complete cds Length = 435 Score = 115 bits (58), Expect = 2e-22 Identities = 169/206 (82%) Strand = Plus / Minus Query: 288 acgacacatgagcagcccaccacctttcttgccttgccctcagagtcaatcttgcaaagc 347 |||| ||||||||| || || ||||| ||||| ||||||||||| |||||||||||||| Sbjct: 368 acgagacatgagcatccaacaaccttccttgcattgccctcagaatcaatcttgcaaaga 309 Query: 348 ccagcccactcgccaagagttttggcactaggcacggtgaccaagtgaacgttgtgctca 407 |||||||| ||||| || ||||||||||| || || || | ||| | | | |||| ||| Sbjct: 308 ccagcccattcgccgagtgttttggcacttggaacagtaagcaatttgatgctgtggtca 249 Query: 408 gcacagagtgccttgacaagcttcacataatcaggctggtcgcaatcctcagcaagcaca 467 || || || || || |||||||| ||||||||||| |||| |||||| ||||| || ||| Sbjct: 248 gcgcaaagagctttaacaagcttgacataatcaggttggttgcaatcttcagccaggaca 189 Query: 468 cagatctgagcagcatgcttctcaat 493 |||| ||||||| | |||||||||| Sbjct: 188 cagagctgagcattacgcttctcaat 163
>gb|AY050324.1| Arabidopsis thaliana At2g32060/F22D22.19 mRNA, complete cds Length = 696 Score = 115 bits (58), Expect = 2e-22 Identities = 169/206 (82%) Strand = Plus / Minus Query: 288 acgacacatgagcagcccaccacctttcttgccttgccctcagagtcaatcttgcaaagc 347 |||| ||||||||| || || ||||| ||||| ||||||||||| |||||||||||||| Sbjct: 446 acgagacatgagcatccaacaaccttccttgcattgccctcagaatcaatcttgcaaaga 387 Query: 348 ccagcccactcgccaagagttttggcactaggcacggtgaccaagtgaacgttgtgctca 407 |||||||| ||||| || ||||||||||| || || || | ||| | | | |||| ||| Sbjct: 386 ccagcccattcgccgagtgttttggcacttggaacagtaagcaatttgatgctgtggtca 327 Query: 408 gcacagagtgccttgacaagcttcacataatcaggctggtcgcaatcctcagcaagcaca 467 || || || || || |||||||| ||||||||||| |||| |||||| ||||| || ||| Sbjct: 326 gcgcaaagagctttaacaagcttgacataatcaggttggttgcaatcttcagccaggaca 267 Query: 468 cagatctgagcagcatgcttctcaat 493 |||| ||||||| | |||||||||| Sbjct: 266 cagagctgagcattacgcttctcaat 241
>gb|AY085161.1| Arabidopsis thaliana clone 13453 mRNA, complete sequence Length = 732 Score = 115 bits (58), Expect = 2e-22 Identities = 169/206 (82%) Strand = Plus / Minus Query: 288 acgacacatgagcagcccaccacctttcttgccttgccctcagagtcaatcttgcaaagc 347 |||| ||||||||| || || ||||| ||||| ||||||||||| |||||||||||||| Sbjct: 482 acgagacatgagcatccaacaaccttccttgcattgccctcagaatcaatcttgcaaaga 423 Query: 348 ccagcccactcgccaagagttttggcactaggcacggtgaccaagtgaacgttgtgctca 407 |||||||| ||||| || ||||||||||| || || || | ||| | | | |||| ||| Sbjct: 422 ccagcccattcgccgagtgttttggcacttggaacagtaagcaatttgatgctgtggtca 363 Query: 408 gcacagagtgccttgacaagcttcacataatcaggctggtcgcaatcctcagcaagcaca 467 || || || || || |||||||| ||||||||||| |||| |||||| ||||| || ||| Sbjct: 362 gcgcaaagagctttaacaagcttgacataatcaggttggttgcaatcttcagccaggaca 303 Query: 468 cagatctgagcagcatgcttctcaat 493 |||| ||||||| | |||||||||| Sbjct: 302 cagagctgagcattacgcttctcaat 277
>gb|AF154659.1| Nicotiana tabacum clone PR50 mRNA sequence Length = 708 Score = 97.6 bits (49), Expect = 5e-17 Identities = 291/369 (78%), Gaps = 2/369 (0%) Strand = Plus / Plus Query: 228 gacttgacgtattcctgcacgatgtgaagaccctccgaatcttcaccatagtccttcaca 287 ||||| ||||| ||||| ||||| || |||||||| | ||||| ||||| |||||||| Sbjct: 214 gacttcacgtactcctggacgatatggagaccctcagtctcttccccataatccttcacg 273 Query: 288 acgacacatgagcagcccaccacctttcttgccttgccctcagagtcaatcttgcaaagc 347 || ||||| || || || || || ||||| || || ||||| ||||| ||||| | Sbjct: 274 acaacacagccacaaccaacaactttccttgctttcccttcagaatcaattttgcataaa 333 Query: 348 ccagcccactcgccaagagttttggcactaggcacggtgaccaagtgaacgttgtgctca 407 |||||||| |||||||||||||| ||| | || || || | ||| || ||||| ||| Sbjct: 334 ccagcccattcgccaagagtttttgcattgggaactgtaatcaaactgacattgtgatca 393 Query: 408 gcacagagtgccttgacaagcttcacataatcaggctggtcgcaatcctcagcaagcaca 467 ||||| || || ||||| ||||| ||||| || ||||||||||| ||||| || |||||| Sbjct: 394 gcacaaagagctttgaccagcttgacatagtctggctggtcgcagtcctctgctagcaca 453 Query: 468 cagatctgagcagcatgcttctcaatcgcttttgcagcttcacggagtcccttga-caag 526 || | ||| |||||||||||||||||| | || ||| ||||| ||||| ||| || |||| Sbjct: 454 caaagctgcgcagcatgcttctcaatcaccttagcaccttcatggagt-cctcgagcaag 512 Query: 527 gccatcatgagcacttgacttcttcatcacaagctgcagagcagtcatcaagtccatggg 586 || ||||||| | |||||| | | ||| ||||||||||| ||||| | ||||||||| Sbjct: 513 tcctccatgagctttagacttcctgagcaccagctgcagagcggtcatgatgtccatggg 572 Query: 587 ctctccaag 595 ||| ||||| Sbjct: 573 ctccccaag 581
>ref|NM_101461.3| Arabidopsis thaliana structural constituent of ribosome AT1G15930 transcript variant AT1G15930.1 mRNA, complete cds Length = 861 Score = 95.6 bits (48), Expect = 2e-16 Identities = 150/184 (81%) Strand = Plus / Minus Query: 277 agtccttcacaacgacacatgagcagcccaccacctttcttgccttgccctcagagtcaa 336 ||||||| ||||| | ||||||||| || || ||||| || || || |||||||| |||| Sbjct: 562 agtccttgacaacaagacatgagcatccaacaaccttcctggcattaccctcagaatcaa 503 Query: 337 tcttgcaaagcccagcccactcgccaagagttttggcactaggcacggtgaccaagtgaa 396 ||||||| || |||||||| |||||||| || |||||||| || || || | ||| | Sbjct: 502 tcttgcagagaccagcccattcgccaagggtcttggcacttggaactgttagcaacctga 443 Query: 397 cgttgtgctcagcacagagtgccttgacaagcttcacataatcaggctggtcgcaatcct 456 | | ||| ||||||||||| ||||| |||||||| |||||||||||||||| ||| || | Sbjct: 442 cttcgtgatcagcacagagagccttcacaagcttgacataatcaggctggttgcagtctt 383 Query: 457 cagc 460 |||| Sbjct: 382 cagc 379
>ref|NM_179342.1| Arabidopsis thaliana structural constituent of ribosome AT1G15930 transcript variant AT1G15930.2 mRNA, complete cds Length = 758 Score = 95.6 bits (48), Expect = 2e-16 Identities = 150/184 (81%) Strand = Plus / Minus Query: 277 agtccttcacaacgacacatgagcagcccaccacctttcttgccttgccctcagagtcaa 336 ||||||| ||||| | ||||||||| || || ||||| || || || |||||||| |||| Sbjct: 459 agtccttgacaacaagacatgagcatccaacaaccttcctggcattaccctcagaatcaa 400 Query: 337 tcttgcaaagcccagcccactcgccaagagttttggcactaggcacggtgaccaagtgaa 396 ||||||| || |||||||| |||||||| || |||||||| || || || | ||| | Sbjct: 399 tcttgcagagaccagcccattcgccaagggtcttggcacttggaactgttagcaacctga 340 Query: 397 cgttgtgctcagcacagagtgccttgacaagcttcacataatcaggctggtcgcaatcct 456 | | ||| ||||||||||| ||||| |||||||| |||||||||||||||| ||| || | Sbjct: 339 cttcgtgatcagcacagagagccttcacaagcttgacataatcaggctggttgcagtctt 280 Query: 457 cagc 460 |||| Sbjct: 279 cagc 276
>gb|AY054130.1| Arabidopsis thaliana At1g15930/T24D18_3 mRNA, complete cds Length = 435 Score = 95.6 bits (48), Expect = 2e-16 Identities = 150/184 (81%) Strand = Plus / Minus Query: 277 agtccttcacaacgacacatgagcagcccaccacctttcttgccttgccctcagagtcaa 336 ||||||| ||||| | ||||||||| || || ||||| || || || |||||||| |||| Sbjct: 379 agtccttgacaacaagacatgagcatccaacaaccttcctggcattaccctcagaatcaa 320 Query: 337 tcttgcaaagcccagcccactcgccaagagttttggcactaggcacggtgaccaagtgaa 396 ||||||| || |||||||| |||||||| || |||||||| || || || | ||| | Sbjct: 319 tcttgcagagaccagcccattcgccaagggtcttggcacttggaactgttagcaacctga 260 Query: 397 cgttgtgctcagcacagagtgccttgacaagcttcacataatcaggctggtcgcaatcct 456 | | ||| ||||||||||| ||||| |||||||| |||||||||||||||| ||| || | Sbjct: 259 cttcgtgatcagcacagagagccttcacaagcttgacataatcaggctggttgcagtctt 200 Query: 457 cagc 460 |||| Sbjct: 199 cagc 196
>gb|AF380626.1|AF380626 Arabidopsis thaliana At1g15930/T24D18_3 mRNA, complete cds Length = 692 Score = 95.6 bits (48), Expect = 2e-16 Identities = 150/184 (81%) Strand = Plus / Minus Query: 277 agtccttcacaacgacacatgagcagcccaccacctttcttgccttgccctcagagtcaa 336 ||||||| ||||| | ||||||||| || || ||||| || || || |||||||| |||| Sbjct: 459 agtccttgacaacaagacatgagcatccaacaaccttcctggcattaccctcagaatcaa 400 Query: 337 tcttgcaaagcccagcccactcgccaagagttttggcactaggcacggtgaccaagtgaa 396 ||||||| || |||||||| |||||||| || |||||||| || || || | ||| | Sbjct: 399 tcttgcagagaccagcccattcgccaagggtcttggcacttggaactgttagcaacctga 340 Query: 397 cgttgtgctcagcacagagtgccttgacaagcttcacataatcaggctggtcgcaatcct 456 | | ||| ||||||||||| ||||| |||||||| |||||||||||||||| ||| || | Sbjct: 339 cttcgtgatcagcacagagagccttcacaagcttgacataatcaggctggttgcagtctt 280 Query: 457 cagc 460 |||| Sbjct: 279 cagc 276
>emb|BX815848.1|CNS0ABMM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH12ZC08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 658 Score = 95.6 bits (48), Expect = 2e-16 Identities = 150/184 (81%) Strand = Plus / Minus Query: 277 agtccttcacaacgacacatgagcagcccaccacctttcttgccttgccctcagagtcaa 336 ||||||| ||||| | ||||||||| || || ||||| || || || |||||||| |||| Sbjct: 435 agtccttgacaacaagacatgagcatccaacaaccttcctggcattaccctcagaatcaa 376 Query: 337 tcttgcaaagcccagcccactcgccaagagttttggcactaggcacggtgaccaagtgaa 396 ||||||| || |||||||| |||||||| || |||||||| || || || | ||| | Sbjct: 375 tcttgcagagaccagcccattcgccaagggtcttggcacttggaactgttagcaacctga 316 Query: 397 cgttgtgctcagcacagagtgccttgacaagcttcacataatcaggctggtcgcaatcct 456 | | ||| ||||||||||| ||||| |||||||| |||||||||||||||| ||| || | Sbjct: 315 cttcgtgatcagcacagagagccttcacaagcttgacataatcaggctggttgcagtctt 256 Query: 457 cagc 460 |||| Sbjct: 255 cagc 252
>emb|BX818653.1|CNS0AB7K Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL90ZB11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 687 Score = 95.6 bits (48), Expect = 2e-16 Identities = 150/184 (81%) Strand = Plus / Minus Query: 277 agtccttcacaacgacacatgagcagcccaccacctttcttgccttgccctcagagtcaa 336 ||||||| ||||| | ||||||||| || || ||||| || || || |||||||| |||| Sbjct: 424 agtccttgacaacaagacatgagcatccaacaaccttcctggcattaccctcagaatcaa 365 Query: 337 tcttgcaaagcccagcccactcgccaagagttttggcactaggcacggtgaccaagtgaa 396 ||||||| || |||||||| |||||||| || |||||||| || || || | ||| | Sbjct: 364 tcttgcagagaccagcccattcgccaagggtcttggcacttggtactgttagcaacctga 305 Query: 397 cgttgtgctcagcacagagtgccttgacaagcttcacataatcaggctggtcgcaatcct 456 | | ||| ||||||||||| ||||| |||||||| |||||||||||||||| ||| || | Sbjct: 304 cttcgtgatcagcacagagagccttcacaagcttgacataatcaggctggttgcagtctt 245 Query: 457 cagc 460 |||| Sbjct: 244 cagc 241
>gb|AY084613.1| Arabidopsis thaliana clone 11328 mRNA, complete sequence Length = 782 Score = 95.6 bits (48), Expect = 2e-16 Identities = 150/184 (81%) Strand = Plus / Minus Query: 277 agtccttcacaacgacacatgagcagcccaccacctttcttgccttgccctcagagtcaa 336 ||||||| ||||| | ||||||||| || || ||||| || || || |||||||| |||| Sbjct: 562 agtccttgacaacaagacatgagcatccaacaaccttcctggcattaccctcagaatcaa 503 Query: 337 tcttgcaaagcccagcccactcgccaagagttttggcactaggcacggtgaccaagtgaa 396 ||||||| || |||||||| |||||||| || |||||||| || || || | ||| | Sbjct: 502 tcttgcagagaccagcccattcgccaagggtcttggcacttggaactgttagcaacctga 443 Query: 397 cgttgtgctcagcacagagtgccttgacaagcttcacataatcaggctggtcgcaatcct 456 | | ||| ||||||||||| ||||| |||||||| |||||||||||||||| ||| || | Sbjct: 442 cttcgtgatcagcacagagagccttcacaagcttgacataatcaggctggttgcagtctt 383 Query: 457 cagc 460 |||| Sbjct: 382 cagc 379
>emb|BX813855.1|CNS0AEMV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB43ZB03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 635 Score = 93.7 bits (47), Expect = 8e-16 Identities = 140/171 (81%) Strand = Plus / Minus Query: 277 agtccttcacaacgacacatgagcagcccaccacctttcttgccttgccctcagagtcaa 336 ||||||| ||||| | ||||||||| || || ||||| || || || |||||||| |||| Sbjct: 438 agtccttgacaacaagacatgagcatccaacaaccttcctggcattaccctcagaatcaa 379 Query: 337 tcttgcaaagcccagcccactcgccaagagttttggcactaggcacggtgaccaagtgaa 396 ||||||| || |||||||| |||||||| || |||||||| || || || | ||| | Sbjct: 378 tcttgcagagaccagcccattcgccaagggtcttggcacttggaactgttagcaacctga 319 Query: 397 cgttgtgctcagcacagagtgccttgacaagcttcacataatcaggctggt 447 | | ||| ||||||||||| ||||| |||||||| |||||||||||||||| Sbjct: 318 cttcgtgatcagcacagagagccttcacaagcttgacataatcaggctggt 268
>emb|CT573502.2| Medicago truncatula chromosome 5 clone mte1-69f21, COMPLETE SEQUENCE Length = 89977 Score = 75.8 bits (38), Expect = 2e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 432 acataatcaggctggtcgcaatcctcagcaagcacacagatctgagcagcatgcttctca 491 ||||||||||| ||||| ||||| ||||| || ||||| | ||| ||||||||||||||| Sbjct: 44189 acataatcaggttggtcacaatcttcagctagaacacaaagctgtgcagcatgcttctca 44248 Query: 492 atcgcttttgcagcttca 509 ||| |||||||| ||||| Sbjct: 44249 atcacttttgcaccttca 44266
>gb|AC122164.6| Medicago truncatula clone mth2-24h4, complete sequence Length = 112428 Score = 73.8 bits (37), Expect = 7e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 435 taatcaggctggtcgcaatcctcagcaagcacacagatctgagcagcatgcttctcaatc 494 |||||||| ||||| |||||||||||||| ||||||| ||| |||||||||||||| ||| Sbjct: 54441 taatcaggttggtcacaatcctcagcaagaacacagagctgtgcagcatgcttctcgatc 54500 Query: 495 gcttt 499 |||| Sbjct: 54501 acttt 54505
>gb|AC153003.14| Medicago truncatula clone mth2-96o5, complete sequence Length = 93881 Score = 69.9 bits (35), Expect = 1e-08 Identities = 62/71 (87%) Strand = Plus / Plus Query: 399 ttgtgctcagcacagagtgccttgacaagcttcacataatcaggctggtcgcaatcctca 458 |||||||||||||| || ||||||||||| || ||||| ||||||||||| ||||| || Sbjct: 18397 ttgtgctcagcacaaagagccttgacaagtttaacatagtcaggctggtcacaatcttct 18456 Query: 459 gcaagcacaca 469 ||||| ||||| Sbjct: 18457 gcaagaacaca 18467
>gb|AC006223.4| Arabidopsis thaliana chromosome 2 clone F22D22 map TEn5, complete sequence Length = 103194 Score = 63.9 bits (32), Expect = 7e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 288 acgacacatgagcagcccaccacctttcttgccttgccctcagagtcaatcttgcaaagc 347 |||| ||||||||| || || ||||| ||||| ||||||||||| ||||||||||||||| Sbjct: 49995 acgagacatgagcatccaacaaccttccttgcattgccctcagaatcaatcttgcaaagc 49936 Score = 61.9 bits (31), Expect = 3e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 423 acaagcttcacataatcaggctggtcgcaatcctcagcaagcacacagatctgagcagca 482 |||||||| ||||||||||| |||| |||||| ||||| || ||||||| ||||||| | Sbjct: 49772 acaagcttgacataatcaggttggttgcaatcttcagccaggacacagagctgagcatta 49713 Query: 483 tgcttctcaat 493 |||||||||| Sbjct: 49712 cgcttctcaat 49702
>gb|AC010924.2|T24D18 Arabidopsis thaliana chromosome 1 BAC T24D18 sequence, complete sequence Length = 80442 Score = 63.9 bits (32), Expect = 7e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 405 tcagcacagagtgccttgacaagcttcacataatcaggctggtcgcaatcctcagc 460 ||||||||||| ||||| |||||||| |||||||||||||||| ||| || ||||| Sbjct: 7591 tcagcacagagagccttcacaagcttgacataatcaggctggttgcagtcttcagc 7536 Score = 40.1 bits (20), Expect = 9.7 Identities = 53/64 (82%) Strand = Plus / Minus Query: 280 ccttcacaacgacacatgagcagcccaccacctttcttgccttgccctcagagtcaatct 339 |||| ||||| | ||||||||| || || ||||| || || || |||||||| ||||||| Sbjct: 7837 ccttgacaacaagacatgagcatccaacaaccttcctggcattaccctcagaatcaatct 7778 Query: 340 tgca 343 |||| Sbjct: 7777 tgca 7774
>gb|BT012865.1| Lycopersicon esculentum clone 113957F, mRNA sequence Length = 749 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 321 ttgccctcagagtcaatcttgcaaagcccagcccactcgccaagagttttggcactagg 379 ||||| ||||||||||||||||| || |||||||| || ||||| || |||||| |||| Sbjct: 395 ttgccttcagagtcaatcttgcacagaccagcccattcaccaagtgtcttggcattagg 337
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 280 ccttcacaacgacacatgagcagcccaccacctttcttgcctt 322 ||||||| ||||||||||||||||| ||||||| ||| ||||| Sbjct: 32277214 ccttcacgacgacacatgagcagccgaccacctctctagcctt 32277172 Score = 50.1 bits (25), Expect = 0.010 Identities = 31/33 (93%) Strand = Plus / Minus Query: 507 tcacggagtcccttgacaaggccatcatgagca 539 |||||||| |||||||||||| ||||||||||| Sbjct: 32275023 tcacggagacccttgacaaggtcatcatgagca 32274991 Score = 48.1 bits (24), Expect = 0.040 Identities = 42/48 (87%) Strand = Plus / Minus Query: 347 cccagcccactcgccaagagttttggcactaggcacggtgaccaagtg 394 ||||||||| |||||||||||| | | |||||| || ||||||||||| Sbjct: 32276944 cccagcccattcgccaagagttcttgtactaggaacagtgaccaagtg 32276897
>gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence Length = 102751 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 280 ccttcacaacgacacatgagcagcccaccacctttcttgcctt 322 ||||||| ||||||||||||||||| ||||||| ||| ||||| Sbjct: 10981 ccttcacgacgacacatgagcagccgaccacctctctagcctt 10939 Score = 50.1 bits (25), Expect = 0.010 Identities = 31/33 (93%) Strand = Plus / Minus Query: 507 tcacggagtcccttgacaaggccatcatgagca 539 |||||||| |||||||||||| ||||||||||| Sbjct: 8792 tcacggagacccttgacaaggtcatcatgagca 8760 Score = 48.1 bits (24), Expect = 0.040 Identities = 42/48 (87%) Strand = Plus / Minus Query: 347 cccagcccactcgccaagagttttggcactaggcacggtgaccaagtg 394 ||||||||| |||||||||||| | | |||||| || ||||||||||| Sbjct: 10711 cccagcccattcgccaagagttcttgtactaggaacagtgaccaagtg 10664
>gb|AC091123.4| Oryza sativa chromosome 3 BAC OSJNBb0093E13 genomic sequence, complete sequence Length = 129778 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 280 ccttcacaacgacacatgagcagcccaccacctttcttgcctt 322 ||||||| ||||||||||||||||| ||||||| ||| ||||| Sbjct: 128886 ccttcacgacgacacatgagcagccgaccacctctctagcctt 128844 Score = 50.1 bits (25), Expect = 0.010 Identities = 31/33 (93%) Strand = Plus / Minus Query: 507 tcacggagtcccttgacaaggccatcatgagca 539 |||||||| |||||||||||| ||||||||||| Sbjct: 126697 tcacggagacccttgacaaggtcatcatgagca 126665 Score = 48.1 bits (24), Expect = 0.040 Identities = 42/48 (87%) Strand = Plus / Minus Query: 347 cccagcccactcgccaagagttttggcactaggcacggtgaccaagtg 394 ||||||||| |||||||||||| | | |||||| || ||||||||||| Sbjct: 128616 cccagcccattcgccaagagttcttgtactaggaacagtgaccaagtg 128569
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 280 ccttcacaacgacacatgagcagcccaccacctttcttgcctt 322 ||||||| ||||||||||||||||| ||||||| ||| ||||| Sbjct: 32367724 ccttcacgacgacacatgagcagccgaccacctctctagcctt 32367682 Score = 50.1 bits (25), Expect = 0.010 Identities = 31/33 (93%) Strand = Plus / Minus Query: 507 tcacggagtcccttgacaaggccatcatgagca 539 |||||||| |||||||||||| ||||||||||| Sbjct: 32365535 tcacggagacccttgacaaggtcatcatgagca 32365503 Score = 48.1 bits (24), Expect = 0.040 Identities = 42/48 (87%) Strand = Plus / Minus Query: 347 cccagcccactcgccaagagttttggcactaggcacggtgaccaagtg 394 ||||||||| |||||||||||| | | |||||| || ||||||||||| Sbjct: 32367454 cccagcccattcgccaagagttcttgtactaggaacagtgaccaagtg 32367407
>gb|AY245452.1| Dermacentor variabilis 40S ribosomal protein S12 mRNA, complete cds Length = 607 Score = 50.1 bits (25), Expect = 0.010 Identities = 73/89 (82%) Strand = Plus / Minus Query: 276 tagtccttcacaacgacacatgagcagcccaccacctttcttgccttgccctcagagtca 335 ||||||||||| |||||||| |||||| ||||| || || |||||||| || ||| Sbjct: 407 tagtccttcaccacgacacaactgcagccgaccactttcctcgccttgccttccttgtcg 348 Query: 336 atcttgcaaagcccagcccactcgccaag 364 |||||||| || || |||||||||||||| Sbjct: 347 atcttgcagaggccggcccactcgccaag 319
>gb|AC158631.6| Mus musculus 10 BAC RP23-424I1 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 206425 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 310 cctttcttgccttgccctcagagtcaa 336 |||||||||||||| |||||||||||| Sbjct: 166842 cctttcttgccttggcctcagagtcaa 166816
>gb|AC155325.5| Mus musculus 10 BAC RP24-86C24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 171402 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 310 cctttcttgccttgccctcagagtcaa 336 |||||||||||||| |||||||||||| Sbjct: 149497 cctttcttgccttggcctcagagtcaa 149471
>dbj|AK147335.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1014L18 product:Very KIND protein (Fragment), full insert sequence Length = 7300 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Plus Query: 315 cttgccttgccctcagagtcaa 336 |||||||||||||||||||||| Sbjct: 2605 cttgccttgccctcagagtcaa 2626
>dbj|AK147693.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN full-length enriched library, clone:M5C1108L06 product:Very KIND protein (Fragment), full insert sequence Length = 6954 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Plus Query: 315 cttgccttgccctcagagtcaa 336 |||||||||||||||||||||| Sbjct: 2258 cttgccttgccctcagagtcaa 2279
>dbj|AK147672.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1106C24 product:Very KIND protein (Fragment), full insert sequence Length = 7026 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Plus Query: 315 cttgccttgccctcagagtcaa 336 |||||||||||||||||||||| Sbjct: 2331 cttgccttgccctcagagtcaa 2352
>dbj|AK046817.1| Mus musculus 10 days neonate medulla oblongata cDNA, RIKEN full-length enriched library, clone:B830014K08 product:Very KIND protein (Fragment) homolog [Mus musculus], full insert sequence Length = 3667 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Plus Query: 315 cttgccttgccctcagagtcaa 336 |||||||||||||||||||||| Sbjct: 2341 cttgccttgccctcagagtcaa 2362
>ref|NM_177261.3| Mus musculus kinase non-catalytic C-lobe domain (KIND) containing 1 (Kndc1), mRNA Length = 7175 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Plus Query: 315 cttgccttgccctcagagtcaa 336 |||||||||||||||||||||| Sbjct: 2462 cttgccttgccctcagagtcaa 2483
>gb|AC107822.18| Mus musculus chromosome 7, clone RP23-182C11, complete sequence Length = 220443 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Plus Query: 315 cttgccttgccctcagagtcaa 336 |||||||||||||||||||||| Sbjct: 125626 cttgccttgccctcagagtcaa 125647
>emb|AJ580324.2|MMU580324 Mus musculus mRNA for Very KIND protein (VKIND gene) Length = 5229 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Plus Query: 315 cttgccttgccctcagagtcaa 336 |||||||||||||||||||||| Sbjct: 2113 cttgccttgccctcagagtcaa 2134
>emb|CR847821.11| Zebrafish DNA sequence from clone DKEY-87I10 in linkage group 14, complete sequence Length = 167652 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 557 aagctgcagagcagtcatcaa 577 ||||||||||||||||||||| Sbjct: 159651 aagctgcagagcagtcatcaa 159631
>gb|AC010063.7| Drosophila melanogaster 3L BAC RP98-16A3 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 194006 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 483 tgcttctcaatcgcttttgca 503 ||||||||||||||||||||| Sbjct: 81607 tgcttctcaatcgcttttgca 81627
>gb|AC093371.6| Genomic sequence for Mus musculus, clone RP23-36P10, complete sequence Length = 177872 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 cccaccacctttcttgccttg 323 ||||||||||||||||||||| Sbjct: 146790 cccaccacctttcttgccttg 146770
>gb|AE003473.3| Drosophila melanogaster chromosome 3L, section 7 of 83 of the complete sequence Length = 315108 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 483 tgcttctcaatcgcttttgca 503 ||||||||||||||||||||| Sbjct: 150288 tgcttctcaatcgcttttgca 150268
>ref|NM_119053.1| Arabidopsis thaliana RNA binding / RNA-directed DNA polymerase/ nucleic acid binding / ribonuclease H AT4G29090 mRNA, complete cds Length = 1728 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 ttaaatctgacacgtttaagatag 28 ||||||||||||| |||||||||| Sbjct: 523 ttaaatctgacacctttaagatag 500
>gb|AC130658.36| Mus musculus chromosome 1, clone RP23-309D5, complete sequence Length = 184094 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 tcttgcaaagcccagcccac 356 |||||||||||||||||||| Sbjct: 28678 tcttgcaaagcccagcccac 28659
>gb|BC099694.1| Mus musculus RIKEN cDNA 4831426I19 gene, mRNA (cDNA clone MGC:106312 IMAGE:4507746), complete cds Length = 3370 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 543 gacttcttcatcacaagctg 562 |||||||||||||||||||| Sbjct: 2442 gacttcttcatcacaagctg 2423
>gb|AC147375.3| Mus musculus BAC clone RP24-159O13 from chromosome 12, complete sequence Length = 176510 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 543 gacttcttcatcacaagctg 562 |||||||||||||||||||| Sbjct: 161597 gacttcttcatcacaagctg 161616
>ref|XM_983651.1| PREDICTED: Mus musculus RIKEN cDNA 4831426I19 gene, transcript variant 2 (4831426I19Rik), mRNA Length = 3341 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 543 gacttcttcatcacaagctg 562 |||||||||||||||||||| Sbjct: 2213 gacttcttcatcacaagctg 2194
>gb|AC093819.4| Homo sapiens BAC clone RP11-368D18 from 4, complete sequence Length = 168474 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 ctaacaggtttcagacatga 161 |||||||||||||||||||| Sbjct: 126931 ctaacaggtttcagacatga 126950
>gb|AC126933.3| Mus musculus BAC clone RP24-117M7 from chromosome 1, complete sequence Length = 170885 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 311 ctttcttgccttgccctcagagtc 334 |||||||||||| ||||||||||| Sbjct: 129255 ctttcttgccttcccctcagagtc 129232
>gb|AC124383.3| Mus musculus BAC clone RP24-411E14 from chromosome 18, complete sequence Length = 175177 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 acctttcttgccttgccctc 328 |||||||||||||||||||| Sbjct: 16707 acctttcttgccttgccctc 16688
>gb|AC024859.1| Caenorhabditis elegans cosmid Y71H2AM, complete sequence Length = 143786 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 ccctccgaatcttcaccata 277 |||||||||||||||||||| Sbjct: 21079 ccctccgaatcttcaccata 21060
>emb|AL080314.29|HSDJ60O19 Human DNA sequence from clone RP1-60O19 on chromosome 6q16.2-21 Contains two novel genes (including FLJ22314), complete sequence Length = 161355 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 ccaagagttttggcactagg 379 |||||||||||||||||||| Sbjct: 73372 ccaagagttttggcactagg 73353
>gb|AC165083.2| Mus musculus BAC clone RP23-411I6 from chromosome 18, complete sequence Length = 208109 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 acctttcttgccttgccctc 328 |||||||||||||||||||| Sbjct: 156556 acctttcttgccttgccctc 156537
>emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70 Length = 198429 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 ttaaatctgacacgtttaagatag 28 ||||||||||||| |||||||||| Sbjct: 62130 ttaaatctgacacctttaagatag 62107
>emb|AL078469.2|ATF25O24 Arabidopsis thaliana DNA chromosome 4, BAC clone F25O24 (ESSA project) Length = 97714 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 ttaaatctgacacgtttaagatag 28 ||||||||||||| |||||||||| Sbjct: 87161 ttaaatctgacacctttaagatag 87138
>emb|AL078470.1|ATF19B15 Arabidopsis thaliana DNA chromosome 4, BAC clone F19B15 (ESSA project) Length = 101679 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 ttaaatctgacacgtttaagatag 28 ||||||||||||| |||||||||| Sbjct: 45657 ttaaatctgacacctttaagatag 45634
>gb|DQ056660.1| Arabidopsis thaliana putative reverse transcriptase/RNA-dependent DNA polymerase (At4g29090) mRNA, complete cds Length = 1728 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 ttaaatctgacacgtttaagatag 28 ||||||||||||| |||||||||| Sbjct: 523 ttaaatctgacacctttaagatag 500
>gb|AC126751.2| Homo sapiens chromosome 5 clone CTD-2224K20, complete sequence Length = 120658 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 131 atgttcataggctaacaggtttca 154 |||||||||||||||||| ||||| Sbjct: 55355 atgttcataggctaacagttttca 55332
>gb|AC113402.2| Homo sapiens chromosome 5 clone RP11-454P21, complete sequence Length = 90271 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 131 atgttcataggctaacaggtttca 154 |||||||||||||||||| ||||| Sbjct: 64546 atgttcataggctaacagttttca 64523
>dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, complete sequence Length = 3354505 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 ggtcgcaatcctcagcaagc 464 |||||||||||||||||||| Sbjct: 756151 ggtcgcaatcctcagcaagc 756170
>ref|NM_172500.1| Mus musculus RIKEN cDNA 4831426I19 gene (4831426I19Rik), mRNA Length = 5069 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 543 gacttcttcatcacaagctg 562 |||||||||||||||||||| Sbjct: 2089 gacttcttcatcacaagctg 2070
>dbj|AK029216.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched library, clone:4831426I19 product:hypothetical Spectrin repeat containing protein, full insert sequence Length = 5069 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 543 gacttcttcatcacaagctg 562 |||||||||||||||||||| Sbjct: 2089 gacttcttcatcacaagctg 2070
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 224 gtgcgacttgacgtattcctgcac 247 ||||||||||||||| |||||||| Sbjct: 3718664 gtgcgacttgacgtagtcctgcac 3718687
>ref|NM_065204.2| Caenorhabditis elegans Y71H2AM.10 (Y71H2AM.10) mRNA, complete cds Length = 2739 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 ccctccgaatcttcaccata 277 |||||||||||||||||||| Sbjct: 944 ccctccgaatcttcaccata 963
>dbj|AK030542.1| Mus musculus adult male pituitary gland cDNA, RIKEN full-length enriched library, clone:5330429E21 product:hypothetical protein, full insert sequence Length = 3080 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 543 gacttcttcatcacaagctg 562 |||||||||||||||||||| Sbjct: 80 gacttcttcatcacaagctg 61
>ref|XM_234584.3| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4831426I19 (predicted) (LOC299356), mRNA Length = 3471 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 543 gacttcttcatcacaagctg 562 |||||||||||||||||||| Sbjct: 2387 gacttcttcatcacaagctg 2368
>ref|XM_233076.2| PREDICTED: Rattus norvegicus similar to ribosomal protein S12 (LOC313283), mRNA Length = 424 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 gtgctcagcacagagtgcct 420 |||||||||||||||||||| Sbjct: 227 gtgctcagcacagagtgcct 208
>emb|BX248325.7| Zebrafish DNA sequence from clone CH211-233I11 in linkage group 9, complete sequence Length = 157207 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 96 aacgaaactctgattcaacaaaac 119 ||||||||||||||||| |||||| Sbjct: 93522 aacgaaactctgattcatcaaaac 93499
>emb|CR548627.7| Zebrafish DNA sequence from clone DKEYP-24A7 in linkage group 19, complete sequence Length = 146348 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 557 aagctgcagagcagtcatca 576 |||||||||||||||||||| Sbjct: 112148 aagctgcagagcagtcatca 112167
>gb|AC132400.3| Mus musculus BAC clone RP23-400A19 from 1, complete sequence Length = 218935 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 311 ctttcttgccttgccctcagagtc 334 |||||||||||| ||||||||||| Sbjct: 35248 ctttcttgccttcccctcagagtc 35225
>gb|U94500.1|TNU94500 Tilapia nilotica ribosomal protein S12 mRNA, complete cds Length = 468 Score = 40.1 bits (20), Expect = 9.7 Identities = 74/92 (80%) Strand = Plus / Minus Query: 273 ccatagtccttcacaacgacacatgagcagcccaccacctttcttgccttgccctcagag 332 ||||| ||||| |||||||| || ||||||||||||||| | || || |||||| | Sbjct: 379 ccataatccttaacaacgacgcagctgcagcccaccaccttgcgtggtttaccctcacgg 320 Query: 333 tcaatcttgcaaagcccagcccactcgccaag 364 || |||||||| || ||| ||||||| ||||| Sbjct: 319 tcgatcttgcacagaccaacccactcaccaag 288 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,028,337 Number of Sequences: 3902068 Number of extensions: 5028337 Number of successful extensions: 84965 Number of sequences better than 10.0: 86 Number of HSP's better than 10.0 without gapping: 87 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84675 Number of HSP's gapped (non-prelim): 289 length of query: 712 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 689 effective length of database: 17,143,297,704 effective search space: 11811732118056 effective search space used: 11811732118056 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
