ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags9g04 |
|---|---|
| Clone Library Name | barley_pub |
>GDIA_BOVIN (P21856) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)| (Guanosine diphosphate dissociation inhibitor 1) (GDI-1) (SMG p25A GDI) Length = 447 Score = 62.4 bits (150), Expect(2) = 1e-18 Identities = 27/60 (45%), Positives = 40/60 (66%) Frame = -2 Query: 509 KPGIDLLGPVDELFFDMYDRYEPVNEPSLDNCFVSSSYDATTHFETTVTDVLNMYTLITG 330 +P ++LL P+D+ F + D YEP+++ S F S SYDATTHFETT D+ ++Y + G Sbjct: 367 EPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426 Score = 50.4 bits (119), Expect(2) = 1e-18 Identities = 22/45 (48%), Positives = 31/45 (68%) Frame = -1 Query: 642 KKQLGRKSDMYVFCCSYTHNVAPKGKFIAFVSAEAETDNPQSELK 508 + Q+ RKSD+YV SY HNVA +GK+IA S ET +P+ E++ Sbjct: 323 QNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVE 367
>GDIA_RAT (P50398) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)| (Guanosine diphosphate dissociation inhibitor 1) (GDI-1) Length = 447 Score = 62.4 bits (150), Expect(2) = 2e-18 Identities = 27/60 (45%), Positives = 40/60 (66%) Frame = -2 Query: 509 KPGIDLLGPVDELFFDMYDRYEPVNEPSLDNCFVSSSYDATTHFETTVTDVLNMYTLITG 330 +P ++LL P+D+ F + D YEP+++ S F S SYDATTHFETT D+ ++Y + G Sbjct: 367 EPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426 Score = 49.7 bits (117), Expect(2) = 2e-18 Identities = 22/45 (48%), Positives = 30/45 (66%) Frame = -1 Query: 642 KKQLGRKSDMYVFCCSYTHNVAPKGKFIAFVSAEAETDNPQSELK 508 + Q+ RKSD+YV SY HNVA +GK+IA S ET P+ E++ Sbjct: 323 QNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVE 367
>GDIA_MOUSE (P50396) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)| (Guanosine diphosphate dissociation inhibitor 1) (GDI-1) Length = 447 Score = 62.4 bits (150), Expect(2) = 2e-18 Identities = 27/60 (45%), Positives = 40/60 (66%) Frame = -2 Query: 509 KPGIDLLGPVDELFFDMYDRYEPVNEPSLDNCFVSSSYDATTHFETTVTDVLNMYTLITG 330 +P ++LL P+D+ F + D YEP+++ S F S SYDATTHFETT D+ ++Y + G Sbjct: 367 EPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426 Score = 49.7 bits (117), Expect(2) = 2e-18 Identities = 22/45 (48%), Positives = 30/45 (66%) Frame = -1 Query: 642 KKQLGRKSDMYVFCCSYTHNVAPKGKFIAFVSAEAETDNPQSELK 508 + Q+ RKSD+YV SY HNVA +GK+IA S ET P+ E++ Sbjct: 323 QNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVE 367
>GDIA_CANFA (O97555) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)| (Guanosine diphosphate dissociation inhibitor 1) (GDI-1) Length = 447 Score = 62.4 bits (150), Expect(2) = 2e-18 Identities = 27/60 (45%), Positives = 40/60 (66%) Frame = -2 Query: 509 KPGIDLLGPVDELFFDMYDRYEPVNEPSLDNCFVSSSYDATTHFETTVTDVLNMYTLITG 330 +P ++LL P+D+ F + D YEP+++ S F S SYDATTHFETT D+ ++Y + G Sbjct: 367 EPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426 Score = 49.7 bits (117), Expect(2) = 2e-18 Identities = 22/45 (48%), Positives = 30/45 (66%) Frame = -1 Query: 642 KKQLGRKSDMYVFCCSYTHNVAPKGKFIAFVSAEAETDNPQSELK 508 + Q+ RKSD+YV SY HNVA +GK+IA S ET P+ E++ Sbjct: 323 QNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVE 367
>GDIA_PONPY (Q7YQM0) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)| (Guanosine diphosphate dissociation inhibitor 1) (GDI-1) Length = 447 Score = 60.5 bits (145), Expect(2) = 4e-18 Identities = 26/60 (43%), Positives = 39/60 (65%) Frame = -2 Query: 509 KPGIDLLGPVDELFFDMYDRYEPVNEPSLDNCFVSSSYDATTHFETTVTDVLNMYTLITG 330 +P ++LL P+D+ F + D YEP+++ F S SYDATTHFETT D+ ++Y + G Sbjct: 367 EPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426 Score = 50.4 bits (119), Expect(2) = 4e-18 Identities = 22/45 (48%), Positives = 31/45 (68%) Frame = -1 Query: 642 KKQLGRKSDMYVFCCSYTHNVAPKGKFIAFVSAEAETDNPQSELK 508 + Q+ RKSD+YV SY HNVA +GK+IA S ET +P+ E++ Sbjct: 323 QNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVE 367
>GDIA_PANTR (P60028) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)| (Guanosine diphosphate dissociation inhibitor 1) (GDI-1) Length = 447 Score = 60.5 bits (145), Expect(2) = 4e-18 Identities = 26/60 (43%), Positives = 39/60 (65%) Frame = -2 Query: 509 KPGIDLLGPVDELFFDMYDRYEPVNEPSLDNCFVSSSYDATTHFETTVTDVLNMYTLITG 330 +P ++LL P+D+ F + D YEP+++ F S SYDATTHFETT D+ ++Y + G Sbjct: 367 EPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426 Score = 50.4 bits (119), Expect(2) = 4e-18 Identities = 22/45 (48%), Positives = 31/45 (68%) Frame = -1 Query: 642 KKQLGRKSDMYVFCCSYTHNVAPKGKFIAFVSAEAETDNPQSELK 508 + Q+ RKSD+YV SY HNVA +GK+IA S ET +P+ E++ Sbjct: 323 QNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVE 367
>GDIA_MACFA (Q8HXX7) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)| (Guanosine diphosphate dissociation inhibitor 1) (GDI-1) Length = 447 Score = 60.5 bits (145), Expect(2) = 4e-18 Identities = 26/60 (43%), Positives = 39/60 (65%) Frame = -2 Query: 509 KPGIDLLGPVDELFFDMYDRYEPVNEPSLDNCFVSSSYDATTHFETTVTDVLNMYTLITG 330 +P ++LL P+D+ F + D YEP+++ F S SYDATTHFETT D+ ++Y + G Sbjct: 367 EPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426 Score = 50.4 bits (119), Expect(2) = 4e-18 Identities = 22/45 (48%), Positives = 31/45 (68%) Frame = -1 Query: 642 KKQLGRKSDMYVFCCSYTHNVAPKGKFIAFVSAEAETDNPQSELK 508 + Q+ RKSD+YV SY HNVA +GK+IA S ET +P+ E++ Sbjct: 323 QNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVE 367
>GDIA_HUMAN (P31150) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)| (Guanosine diphosphate dissociation inhibitor 1) (GDI-1) (XAP-4) (Oligophrenin-2) Length = 447 Score = 60.5 bits (145), Expect(2) = 4e-18 Identities = 26/60 (43%), Positives = 39/60 (65%) Frame = -2 Query: 509 KPGIDLLGPVDELFFDMYDRYEPVNEPSLDNCFVSSSYDATTHFETTVTDVLNMYTLITG 330 +P ++LL P+D+ F + D YEP+++ F S SYDATTHFETT D+ ++Y + G Sbjct: 367 EPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426 Score = 50.4 bits (119), Expect(2) = 4e-18 Identities = 22/45 (48%), Positives = 31/45 (68%) Frame = -1 Query: 642 KKQLGRKSDMYVFCCSYTHNVAPKGKFIAFVSAEAETDNPQSELK 508 + Q+ RKSD+YV SY HNVA +GK+IA S ET +P+ E++ Sbjct: 323 QNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVE 367
>GDI1_SCHPO (Q10305) Probable secretory pathway GDP dissociation inhibitor 1| Length = 440 Score = 63.9 bits (154), Expect(2) = 2e-17 Identities = 29/59 (49%), Positives = 40/59 (67%) Frame = -2 Query: 506 PGIDLLGPVDELFFDMYDRYEPVNEPSLDNCFVSSSYDATTHFETTVTDVLNMYTLITG 330 PG+ LLGPV E F + + YEPV + + D C++S S DAT+HFET DV ++Y +TG Sbjct: 368 PGLKLLGPVVESFSRVQEIYEPVTDGTKDQCYISKSVDATSHFETLTCDVRDIYKRMTG 426 Score = 44.7 bits (104), Expect(2) = 2e-17 Identities = 20/44 (45%), Positives = 28/44 (63%) Frame = -1 Query: 642 KKQLGRKSDMYVFCCSYTHNVAPKGKFIAFVSAEAETDNPQSEL 511 + Q+ RK D+Y+ S HNV PKG ++A +S ET NP SE+ Sbjct: 323 QNQVKRKHDIYIAGISSVHNVCPKGYYLAIISTIVETANPLSEI 366
>GDI1_YEAST (P39958) Rab GDP-dissociation inhibitor (Rab GDI) (Secretory| pathway GDP dissociation inhibitor) Length = 451 Score = 58.5 bits (140), Expect(2) = 5e-17 Identities = 25/60 (41%), Positives = 40/60 (66%) Frame = -2 Query: 509 KPGIDLLGPVDELFFDMYDRYEPVNEPSLDNCFVSSSYDATTHFETTVTDVLNMYTLITG 330 +P LLGP++E F + + +EP + S DN ++S SYDA++HFE+ DV ++Y +TG Sbjct: 378 EPAFKLLGPIEEKFMGIAELFEPREDGSKDNIYLSRSYDASSHFESMTDDVKDIYFRVTG 437 Score = 48.9 bits (115), Expect(2) = 5e-17 Identities = 23/45 (51%), Positives = 29/45 (64%) Frame = -1 Query: 642 KKQLGRKSDMYVFCCSYTHNVAPKGKFIAFVSAEAETDNPQSELK 508 + QLGRKSD+YV S HNV KG ++A +S ETD P EL+ Sbjct: 334 QSQLGRKSDIYVAIVSDAHNVCSKGHYLAIISTIIETDKPHIELE 378
>GDIB_HUMAN (P50395) Rab GDP dissociation inhibitor beta (Rab GDI beta)| (Guanosine diphosphate dissociation inhibitor 2) (GDI-2) Length = 445 Score = 55.1 bits (131), Expect(2) = 1e-16 Identities = 24/60 (40%), Positives = 38/60 (63%) Frame = -2 Query: 509 KPGIDLLGPVDELFFDMYDRYEPVNEPSLDNCFVSSSYDATTHFETTVTDVLNMYTLITG 330 +P ++LL P+++ F + D P + + F+S +YDATTHFETT D+ N+Y +TG Sbjct: 367 RPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNIYKRMTG 426 Score = 50.8 bits (120), Expect(2) = 1e-16 Identities = 22/45 (48%), Positives = 31/45 (68%) Frame = -1 Query: 642 KKQLGRKSDMYVFCCSYTHNVAPKGKFIAFVSAEAETDNPQSELK 508 + Q+ RKSD+YV S+ HNVA +GK+IA VS ET P+ E++ Sbjct: 323 QNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIR 367
>GDIB_CANFA (O97556) Rab GDP dissociation inhibitor beta (Rab GDI beta)| (Guanosine diphosphate dissociation inhibitor 2) (GDI-2) Length = 445 Score = 55.1 bits (131), Expect(2) = 2e-16 Identities = 24/60 (40%), Positives = 38/60 (63%) Frame = -2 Query: 509 KPGIDLLGPVDELFFDMYDRYEPVNEPSLDNCFVSSSYDATTHFETTVTDVLNMYTLITG 330 +P ++LL P+++ F + D P + + F+S +YDATTHFETT D+ N+Y +TG Sbjct: 367 RPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNIYKRMTG 426 Score = 50.4 bits (119), Expect(2) = 2e-16 Identities = 23/45 (51%), Positives = 31/45 (68%) Frame = -1 Query: 642 KKQLGRKSDMYVFCCSYTHNVAPKGKFIAFVSAEAETDNPQSELK 508 + Q+ RKSD+YV S HNVA +GK+IA VS AET P+ E++ Sbjct: 323 QNQVNRKSDIYVCMISSAHNVAAQGKYIAIVSTTAETKEPEKEIR 367
>GDIB_RAT (P50399) Rab GDP dissociation inhibitor beta (Rab GDI beta)| (Guanosine diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3) Length = 445 Score = 54.3 bits (129), Expect(2) = 2e-16 Identities = 23/60 (38%), Positives = 39/60 (65%) Frame = -2 Query: 509 KPGIDLLGPVDELFFDMYDRYEPVNEPSLDNCFVSSSYDATTHFETTVTDVLNMYTLITG 330 +P ++LL P+++ F + D + P + + F+S +YDATTHFETT D+ ++Y +TG Sbjct: 367 RPALELLEPIEQKFVSISDLFVPKDLGTDSQIFISRAYDATTHFETTCDDIKDIYKRMTG 426 Score = 50.8 bits (120), Expect(2) = 2e-16 Identities = 22/45 (48%), Positives = 31/45 (68%) Frame = -1 Query: 642 KKQLGRKSDMYVFCCSYTHNVAPKGKFIAFVSAEAETDNPQSELK 508 + Q+ RKSD+YV S+ HNVA +GK+IA VS ET P+ E++ Sbjct: 323 QNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIR 367
>GDIB_MOUSE (Q61598) Rab GDP dissociation inhibitor beta (Rab GDI beta)| (Guanosine diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3) Length = 445 Score = 54.3 bits (129), Expect(2) = 2e-16 Identities = 23/60 (38%), Positives = 39/60 (65%) Frame = -2 Query: 509 KPGIDLLGPVDELFFDMYDRYEPVNEPSLDNCFVSSSYDATTHFETTVTDVLNMYTLITG 330 +P ++LL P+++ F + D + P + + F+S +YDATTHFETT D+ ++Y +TG Sbjct: 367 RPALELLEPIEQKFVSISDLFVPKDLGTDSQIFISRAYDATTHFETTCDDIKDIYKRMTG 426 Score = 50.8 bits (120), Expect(2) = 2e-16 Identities = 22/45 (48%), Positives = 31/45 (68%) Frame = -1 Query: 642 KKQLGRKSDMYVFCCSYTHNVAPKGKFIAFVSAEAETDNPQSELK 508 + Q+ RKSD+YV S+ HNVA +GK+IA VS ET P+ E++ Sbjct: 323 QNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIR 367
>GDIB_PONPY (Q5RCE1) Rab GDP dissociation inhibitor beta (Rab GDI beta)| (Guanosine diphosphate dissociation inhibitor 2) (GDI-2) Length = 445 Score = 53.9 bits (128), Expect(2) = 3e-16 Identities = 24/60 (40%), Positives = 38/60 (63%) Frame = -2 Query: 509 KPGIDLLGPVDELFFDMYDRYEPVNEPSLDNCFVSSSYDATTHFETTVTDVLNMYTLITG 330 +P ++LL P+++ F + D P + + F+S +YDATTHFETT D+ N+Y +TG Sbjct: 367 RPALELLEPIEQKFVSISDLLVPKDLGTESLIFISRTYDATTHFETTCDDIKNIYKRMTG 426 Score = 50.8 bits (120), Expect(2) = 3e-16 Identities = 22/45 (48%), Positives = 31/45 (68%) Frame = -1 Query: 642 KKQLGRKSDMYVFCCSYTHNVAPKGKFIAFVSAEAETDNPQSELK 508 + Q+ RKSD+YV S+ HNVA +GK+IA VS ET P+ E++ Sbjct: 323 QNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIR 367
>GDIB_PIG (Q6Q7J2) Rab GDP dissociation inhibitor beta (Rab GDI beta)| (Guanosine diphosphate dissociation inhibitor 2) (GDI-2) Length = 445 Score = 52.4 bits (124), Expect(2) = 9e-15 Identities = 23/60 (38%), Positives = 38/60 (63%) Frame = -2 Query: 509 KPGIDLLGPVDELFFDMYDRYEPVNEPSLDNCFVSSSYDATTHFETTVTDVLNMYTLITG 330 +P ++LL P+++ F + D P + + F+S +YDATTHFETT D+ ++Y +TG Sbjct: 367 RPALELLKPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTCGDIKDIYKRMTG 426 Score = 47.4 bits (111), Expect(2) = 9e-15 Identities = 21/45 (46%), Positives = 29/45 (64%) Frame = -1 Query: 642 KKQLGRKSDMYVFCCSYTHNVAPKGKFIAFVSAEAETDNPQSELK 508 + Q+ RKSD+YV S HNVA +GK+IA S ET P+ E++ Sbjct: 323 QNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETKEPEKEIR 367
>GDIB_BOVIN (P50397) Rab GDP dissociation inhibitor beta (Rab GDI beta)| (Guanosine diphosphate dissociation inhibitor 2) (GDI-2) Length = 445 Score = 50.8 bits (120), Expect(2) = 3e-14 Identities = 22/60 (36%), Positives = 37/60 (61%) Frame = -2 Query: 509 KPGIDLLGPVDELFFDMYDRYEPVNEPSLDNCFVSSSYDATTHFETTVTDVLNMYTLITG 330 +P ++LL P+++ F + D P + + F+S +YDATTHFETT D+ ++Y + G Sbjct: 367 RPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKDIYKRMMG 426 Score = 47.4 bits (111), Expect(2) = 3e-14 Identities = 21/45 (46%), Positives = 29/45 (64%) Frame = -1 Query: 642 KKQLGRKSDMYVFCCSYTHNVAPKGKFIAFVSAEAETDNPQSELK 508 + Q+ RKSD+YV S HNVA +GK+IA S ET P+ E++ Sbjct: 323 QNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETKEPEKEIR 367
>LEPA_TREDE (P60794) GTP-binding protein lepA| Length = 601 Score = 32.3 bits (72), Expect = 1.4 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 3/94 (3%) Frame = -2 Query: 599 ARTLTMSRQKGSSLRLCLPKRRL---ITHSLN*KPGIDLLGPVDELFFDMYDRYEPVNEP 429 A +T + G+ + LC+ KR + +T+ + + P+ E+ FD YDR + Sbjct: 409 ATLITPTNYLGNVMSLCMEKRGVQTNMTYLDEKRVEMTYEMPLAEVLFDFYDRLK----- 463 Query: 428 SLDNCFVSSSYDATTHFETTVTDVLNMYTLITGK 327 S+ + S Y+ ET TD+ + LI GK Sbjct: 464 SISRGYASFDYEV---IETRPTDLAKIDILINGK 494 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,021,154 Number of Sequences: 219361 Number of extensions: 1789662 Number of successful extensions: 4237 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4092 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4237 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6769072002 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
