ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags9f24 |
|---|---|
| Clone Library Name | barley_pub |
>NANB_STRPN (Q54727) Sialidase B precursor (EC 3.2.1.18) (Neuraminidase B)| Length = 697 Score = 33.5 bits (75), Expect = 0.57 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Frame = -3 Query: 574 TIGRVCMADSADGGVTWSYAHKTELPNPNSGIDG--VKMKDGRILVAYNTFSRGILKIAV 401 T G + S D G TW + +P N+ + V+++DG I + T + G + Sbjct: 510 TSGELTYLISDDSGQTWKKS-SASIPFKNATAEAQMVELRDGVIRTFFRT-TTGKIAYMT 567 Query: 400 SRDDGDSWNEVMTLE 356 SRD G++W++V ++ Sbjct: 568 SRDSGETWSKVSYID 582
>AMGO3_MOUSE (Q8C2S7) Amphoterin-induced protein 3 precursor (AMIGO-3)| (Alivin-3) Length = 508 Score = 32.0 bits (71), Expect = 1.7 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Frame = +2 Query: 185 WIATMSLPVVADLQFHRPTRSKNDM-LNLRPVVCVCNMYELIHGLDYRRI*ELHTF 349 W+ +S+P +A L PT KN + L+ P+ C C++Y L+ R + LH F Sbjct: 194 WLKHISIPELAAL----PTYLKNRLYLHNNPLPCDCSLYHLLRRWHQRGLSALHDF 245
>AMGO3_RAT (Q80ZD5) Amphoterin-induced protein 3 precursor (AMIGO-3)| (Alivin-3) Length = 508 Score = 31.6 bits (70), Expect = 2.2 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Frame = +2 Query: 185 WIATMSLPVVADLQFHRPTRSKNDM-LNLRPVVCVCNMYELIHGLDYRRI*ELHTF 349 W+ +S+P +A L PT KN + L+ P+ C C++Y L+ R + LH F Sbjct: 194 WLGHVSVPELAAL----PTFLKNRLYLHNNPLPCDCSLYHLLRRWHQRGLSALHDF 245
>EI2BL_PYRFU (Q8U3J1) Putative translation initiation factor eIF-2B subunit| 2-like (eIF-2B GDP-GTP exchange factor) Length = 276 Score = 30.8 bits (68), Expect = 3.7 Identities = 13/47 (27%), Positives = 26/47 (55%) Frame = +3 Query: 285 YVICTSSSMVLITAGYENSIPFVSSSVITSFHESPSSLETAILSMPL 425 YV+ + + +L + YE+ +PF ++ FH+ +S E ++ PL Sbjct: 193 YVVNKAGTYLLAISCYESEVPFYVAAETYKFHQKITSKEVELVERPL 239
>BRE1B_HUMAN (O75150) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING| finger protein 40) (95 kDa retinoblastoma-associated protein) (RBP95) Length = 1001 Score = 30.4 bits (67), Expect = 4.8 Identities = 28/100 (28%), Positives = 43/100 (43%) Frame = -3 Query: 604 TIRMLLRSFETIGRVCMADSADGGVTWSYAHKTELPNPNSGIDGVKMKDGRILVAYNTFS 425 T+ LLR E+ G + A A G T LP P + +++D ++ S Sbjct: 104 TVEALLRCHESQGELSSAPEAPGTQEGPTCDGTPLPEPGTS----ELRDPLLMQLRPPLS 159 Query: 424 RGILKIAVSRDDGDSWNEVMTLEDTKGMEFSYPAVIKTMD 305 L V+ G S +E + LE MEFS AV + ++ Sbjct: 160 EPALAFVVAL--GASSSEEVELELQGRMEFSKAAVSRVVE 197
>LEU3_BACHK (Q6HLF2) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 354 Score = 30.4 bits (67), Expect = 4.8 Identities = 18/45 (40%), Positives = 26/45 (57%) Frame = -3 Query: 385 DSWNEVMTLEDTKGMEFSYPAVIKTMDELVHITYTYNRTQIKHVV 251 D + V+ E T G+ FSYP K DE+ T TY+R +I+ +V Sbjct: 122 DEIDFVVVRELTGGIYFSYPK--KRTDEVATDTLTYHRHEIERIV 164
>K6PF_HAECO (Q27665) 6-phosphofructokinase (EC 2.7.1.11) (Phosphofructokinase)| (Phosphohexokinase) Length = 789 Score = 30.4 bits (67), Expect = 4.8 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 15/126 (11%) Frame = -3 Query: 619 QTANGTIRMLLRSFETIG-RVC--------MADSADGGVTWSYAHKTELPNPNSGIDG-- 473 Q NG + ++R +G +VC M D D V S+ +++ I G Sbjct: 44 QGMNGAVHSVVRMGIYLGCKVCFINEGYQGMVDGGDNIVEASWNSGSDIIQKGGTIIGSA 103 Query: 472 ----VKMKDGRILVAYNTFSRGILKIAVSRDDGDSWNEVMTLEDTKGMEFSYPAVIKTMD 305 ++ ++GR+ AYN +GI + V DG +L +P ++K + Sbjct: 104 RCTDLRQREGRMKAAYNLIEKGITNLVVIGGDG-------SLIGANQFRKDWPGLVKELV 156 Query: 304 ELVHIT 287 + IT Sbjct: 157 DTKKIT 162
>PUR4_CAEEL (Q19311) Probable phosphoribosylformylglycinamidine synthase (EC| 6.3.5.3) (FGAM synthase) (FGAMS) (Formylglycinamide ribotide amidotransferase) (FGARAT) (Formylglycinamide ribotide synthetase) Length = 1343 Score = 30.0 bits (66), Expect = 6.3 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 6/77 (7%) Frame = -3 Query: 586 RSFETIGRVCMADSADGGVTWSYAHKTELP---NPNSGIDGVK---MKDGRILVAYNTFS 425 ++ +T G+VC+ D G+T + +LP NPN ID V +DGR L Sbjct: 1242 QNLKTNGQVCIRFCDDRGMTGADHGSVKLPYPWNPNGSIDDVAAICSRDGRHLAMMPHAD 1301 Query: 424 RGILKIAVSRDDGDSWN 374 R L + WN Sbjct: 1302 RSFLTWQWAESSEVPWN 1318
>SLAP_CAMFE (P35827) S-layer protein (Surface array protein) (SAP)| Length = 939 Score = 29.6 bits (65), Expect = 8.2 Identities = 24/100 (24%), Positives = 40/100 (40%) Frame = -3 Query: 487 SGIDGVKMKDGRILVAYNTFSRGILKIAVSRDDGDSWNEVMTLEDTKGMEFSYPAVIKTM 308 +G D + MK + A T + I +A+S + + D F +I T Sbjct: 591 AGNDTIAMKSAALTSANFTMIKNIENVAIS--------DAVATADLSSSAFKNSVIITTK 642 Query: 307 DELVHITYTYNRTQIKHVVLRPSGTVKL*VCDYWETHGSN 188 E T T N+ Q+ + +G+VKL + G+N Sbjct: 643 -EAADTTLTINKDQVINFTAADAGSVKLITVKLNDVTGAN 681
>THID_BACSU (P39610) Phosphomethylpyrimidine kinase (EC 2.7.4.7) (HMP-phosphate| kinase) (HMP-P kinase) Length = 271 Score = 29.6 bits (65), Expect = 8.2 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 13/78 (16%) Frame = -3 Query: 436 NTFSRGILKIAVSRDDGDSWN-------------EVMTLEDTKGMEFSYPAVIKTMDELV 296 N + L + V+ D +SWN ++ T+ D G++ ++ T+D + Sbjct: 31 NVYGMTALTVIVAMDPNNSWNHQVFPIDTDTIRAQLATITDGIGVDAMKTGMLPTVDIIE 90 Query: 295 HITYTYNRTQIKHVVLRP 242 T Q+K+VV+ P Sbjct: 91 LAAKTIKEKQLKNVVIDP 108 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,218,612 Number of Sequences: 219361 Number of extensions: 2205368 Number of successful extensions: 5357 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 5180 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5354 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6200242422 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
