ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags9f20 |
|---|---|
| Clone Library Name | barley_pub |
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 121 bits (304), Expect = 2e-27 Identities = 57/102 (55%), Positives = 74/102 (72%) Frame = -2 Query: 687 KKTIPRRAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD 508 K T+ R+A GQ WEDPTL EW N +RLF G+LGN+VND+ L +AFS +PS KVVRD Sbjct: 5 KTTVVRKAGGQVWEDPTLLEWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD 64 Query: 507 KRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKS 382 R GKT+G+GFVSF + A +E NGKY+G+RP+KL ++ Sbjct: 65 -REGKTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRA 105
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 74.3 bits (181), Expect = 3e-13 Identities = 38/99 (38%), Positives = 57/99 (57%) Frame = -2 Query: 618 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 439 N + +F GDL E+ + + AF+ F + A+VV+D TGK+KGYGFVSF N D A Sbjct: 95 NHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENA 154 Query: 438 IKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQK 322 I M G+++G R I ++NW R Q+N+ ++ Sbjct: 155 IVHMGGQWLGGRQI---RTNWATRKPPAPKSTQENNTKQ 190 Score = 40.8 bits (94), Expect = 0.004 Identities = 28/102 (27%), Positives = 43/102 (42%) Frame = -2 Query: 699 PAAKKKTIPRRAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAK 520 P A K T +ED P+N ++CG + + + D ++ + FS F Sbjct: 177 PPAPKSTQENNTKQLRFEDVVNQSSPKN-CTVYCGGIASGLTDQLMRQTFSPFGQ----- 230 Query: 519 VVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIK 394 + + R KGY FV FS A AI +NG + +K Sbjct: 231 -IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 271 Score = 36.6 bits (83), Expect = 0.077 Identities = 21/77 (27%), Positives = 39/77 (50%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ G+L +V + ++ + FS+ K++ + + Y FV F D AAA+ M Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAAM 68 Query: 426 NGKYVGNRPIKLRKSNW 376 NG+ + + +K+ NW Sbjct: 69 NGRKILGKEVKV---NW 82
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 73.9 bits (180), Expect = 4e-13 Identities = 36/89 (40%), Positives = 56/89 (62%) Frame = -2 Query: 633 TEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPT 454 T+ +N + +F GDL ++ + + AF+ F + A+VV+D TGK+KGYGFVSF N Sbjct: 99 TQRSQNHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 158 Query: 453 DLAAAIKEMNGKYVGNRPIKLRKSNWKER 367 D AI++M G+++G R I ++NW R Sbjct: 159 DAENAIQQMGGQWLGGRQI---RTNWATR 184 Score = 39.7 bits (91), Expect = 0.009 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 1/125 (0%) Frame = -2 Query: 699 PAAKKKTIPRRAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAK 520 P A K T S+++ P N ++CG + + + + ++ + FS F + Sbjct: 186 PPAPKSTYESNTKQLSYDEVVNQSSPSN-CTVYCGGVTSGLTEQLMRQTFSPFGQIMEIR 244 Query: 519 VVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNW-KERTDVEALQR 343 V DK GY FV F++ A AI +NG + + K W KE D+ + Sbjct: 245 VFPDK------GYSFVRFNSHESAAHAIVSVNGTTIEGHVV---KCYWGKETLDMINPVQ 295 Query: 342 QKNHI 328 Q+N I Sbjct: 296 QQNQI 300 Score = 39.7 bits (91), Expect = 0.009 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 7/99 (7%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ G+L +V + ++ + FS+ K++ D T Y FV F AAA+ M Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66 Query: 426 NGKYVGNRPIKLR----KSNWKERTD---VEALQRQKNH 331 NG+ + + +K+ S+ K+ T V + QR +NH Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQNH 105
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 73.2 bits (178), Expect = 7e-13 Identities = 36/89 (40%), Positives = 56/89 (62%) Frame = -2 Query: 633 TEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPT 454 T+ ++ + +F GDL E+ + + AF+ F + A+VV+D TGK+KGYGFVSF N Sbjct: 99 TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW 158 Query: 453 DLAAAIKEMNGKYVGNRPIKLRKSNWKER 367 D AI++M G+++G R I ++NW R Sbjct: 159 DAENAIQQMGGQWLGGRQI---RTNWATR 184 Score = 42.7 bits (99), Expect = 0.001 Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 1/129 (0%) Frame = -2 Query: 699 PAAKKKTIPRRAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAK 520 P A K T S+ D +++ N+ ++CG + + + + ++ + FS F + Sbjct: 186 PPAPKSTYESNTKQLSY-DEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIR 244 Query: 519 VVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNW-KERTDVEALQR 343 V DK GY FV FS+ A AI +NG + + K W KE D+ + Sbjct: 245 VFPDK------GYSFVRFSSHESAAHAIVSVNGTTIEGHVV---KCYWGKETLDMINPVQ 295 Query: 342 QKNHIQKKP 316 Q+N I P Sbjct: 296 QQNQIGYPP 304 Score = 37.7 bits (86), Expect = 0.034 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 7/99 (7%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ G+L +V + ++ + FS+ K++ D T Y FV F AAA+ M Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66 Query: 426 NGKYVGNRPIKLR----KSNWKERTD---VEALQRQKNH 331 NG+ + + +K+ S+ K+ T V + QR ++H Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDH 105
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 72.4 bits (176), Expect = 1e-12 Identities = 36/84 (42%), Positives = 51/84 (60%) Frame = -2 Query: 618 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 439 N + +F GDL E+ + + AF+ F + A+VV+D TGK+KGYGFVSF N D A Sbjct: 112 NHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENA 171 Query: 438 IKEMNGKYVGNRPIKLRKSNWKER 367 I M G+++G R I ++NW R Sbjct: 172 IVHMGGQWLGGRQI---RTNWATR 192 Score = 40.4 bits (93), Expect = 0.005 Identities = 28/102 (27%), Positives = 43/102 (42%) Frame = -2 Query: 699 PAAKKKTIPRRAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAK 520 P A K T +ED P+N ++CG + + + D ++ + FS F Sbjct: 194 PPAPKSTQETNTKQLRFEDVVNQSSPKN-CTVYCGGIASGLTDQLMRQTFSPFGQ----- 247 Query: 519 VVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIK 394 + + R KGY FV FS A AI +NG + +K Sbjct: 248 -IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288 Score = 33.1 bits (74), Expect = 0.85 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 15/92 (16%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD----KRTGKTKG-----------YGFV 472 L+ G+L +V + ++ + FS+ K++ + +R + G Y FV Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70 Query: 471 SFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNW 376 F D AAA+ MNG+ + + +K+ NW Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKV---NW 99
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 70.9 bits (172), Expect = 4e-12 Identities = 35/118 (29%), Positives = 63/118 (53%) Frame = -2 Query: 684 KTIPRRAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDK 505 K I +W + ++ + LF GDL V+D+ L AF FPS+ V+ D Sbjct: 137 KQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDM 196 Query: 504 RTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQKNH 331 +TG ++GYGFVSF++ D A+ M G+ + RP+++ + ++ + Q+++N+ Sbjct: 197 QTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNNNYQQRRNY 254 Score = 40.4 bits (93), Expect = 0.005 Identities = 23/81 (28%), Positives = 39/81 (48%) Frame = -2 Query: 618 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 439 +D L+ G+L + +D+L + F K++ DK K Y FV + D A Sbjct: 72 SDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNN-KNVNYAFVEYHQSHDANIA 130 Query: 438 IKEMNGKYVGNRPIKLRKSNW 376 ++ +NGK + N +K+ NW Sbjct: 131 LQTLNGKQIENNIVKI---NW 148
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 66.2 bits (160), Expect = 9e-11 Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 1/88 (1%) Frame = -2 Query: 618 NDYRLFCGDLGNEVND-DVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAA 442 ++Y +F GDL VN+ DV S SR+ S AK++ D +T ++GYGFV F++ D + Sbjct: 184 SEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKS 243 Query: 441 AIKEMNGKYVGNRPIKLRKSNWKERTDV 358 A+ EM G+ G+RPI++ + K + V Sbjct: 244 ALAEMQGQICGDRPIRVGLATPKSKAHV 271 Score = 37.0 bits (84), Expect = 0.059 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 3/85 (3%) Frame = -2 Query: 621 ENDYR---LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTD 451 EN Y+ L+ G+L V + + + ++ K++R++ TG GY FV F++P + Sbjct: 87 ENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHE 146 Query: 450 LAAAIKEMNGKYVGNRPIKLRKSNW 376 ++A+ N G L K NW Sbjct: 147 ASSAMSMNNKPIPGTN--HLFKLNW 169 Score = 33.1 bits (74), Expect = 0.85 Identities = 22/72 (30%), Positives = 31/72 (43%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F G L V+++ L F F K+ K G GFV F N AI ++ Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGK------GCGFVQFVNRQSAEIAINQL 358 Query: 426 NGKYVGNRPIKL 391 G +GN I+L Sbjct: 359 QGYPLGNSRIRL 370
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 64.3 bits (155), Expect = 3e-10 Identities = 29/80 (36%), Positives = 50/80 (62%) Frame = -2 Query: 621 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAA 442 E +YR F G L ND+ L +AFS+F +K++ D+ TG+++G+GFV+F + + Sbjct: 3 EVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRD 62 Query: 441 AIKEMNGKYVGNRPIKLRKS 382 AI+ MNG+ + R I + ++ Sbjct: 63 AIEGMNGQELDGRNITVNEA 82
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 63.2 bits (152), Expect = 8e-10 Identities = 29/78 (37%), Positives = 49/78 (62%) Frame = -2 Query: 615 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI 436 +YR F G L N++ L +AF+ F +KV+ D+ TG+++G+GFV+FS+ + AI Sbjct: 7 EYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAI 66 Query: 435 KEMNGKYVGNRPIKLRKS 382 + MNGK + R I + ++ Sbjct: 67 ENMNGKELDGRNITVNQA 84
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 63.2 bits (152), Expect = 8e-10 Identities = 29/80 (36%), Positives = 50/80 (62%) Frame = -2 Query: 621 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAA 442 E +YR F G L ND+ L + FS+F +K++ D+ +G+++G+GFV+F + + Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62 Query: 441 AIKEMNGKYVGNRPIKLRKS 382 AI+EMNGK + R I + ++ Sbjct: 63 AIEEMNGKELDGRVITVNEA 82
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 62.4 bits (150), Expect = 1e-09 Identities = 33/109 (30%), Positives = 63/109 (57%), Gaps = 1/109 (0%) Frame = -2 Query: 693 AKKKTIPRRAAGQSWEDPTLTEWPE-NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 517 A+KK+ + +E ++ + + L+ +L + VND+ L + FS + + KV Sbjct: 300 AQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKV 359 Query: 516 VRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKE 370 + + + G ++G+GFV++SNP + A+KEMNGK +G +P+ + + KE Sbjct: 360 MMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKE 407 Score = 51.6 bits (122), Expect = 2e-06 Identities = 33/129 (25%), Positives = 66/129 (51%), Gaps = 1/129 (0%) Frame = -2 Query: 669 RAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 490 RA +S P+ T ++ +L E+ DD L K F ++ + A V++D+ +G + Sbjct: 213 RARSESGAVPSFTN-------VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNS 264 Query: 489 KGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQR-QKNHIQKKPK 313 + +GFV+F +P A A+++MNG +G + + ++ K + E ++ ++ I + K Sbjct: 265 RSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEK 324 Query: 312 TQKKGILHK 286 Q + K Sbjct: 325 LQGSNLYLK 333 Score = 49.7 bits (117), Expect = 9e-06 Identities = 26/76 (34%), Positives = 45/76 (59%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ GDL VN+ L F++ + +V RD T ++ GY +V+F+NP D + A++ + Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESL 105 Query: 426 NGKYVGNRPIKLRKSN 379 N + +RPI++ SN Sbjct: 106 NYAPIRDRPIRIMLSN 121 Score = 42.0 bits (97), Expect = 0.002 Identities = 22/70 (31%), Positives = 37/70 (52%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F +L +++ L + FS F + KV D G++KGYGFV F AAI ++ Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKL 192 Query: 426 NGKYVGNRPI 397 NG + ++ + Sbjct: 193 NGMLLNDKQV 202
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 62.4 bits (150), Expect = 1e-09 Identities = 31/79 (39%), Positives = 51/79 (64%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ +L + ++D+ L K FS F S AKV+ + G++KG+GFV FS+P + A+ EM Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 426 NGKYVGNRPIKLRKSNWKE 370 NG+ VG++P+ + + KE Sbjct: 354 NGRIVGSKPLYVALAQRKE 372 Score = 58.9 bits (141), Expect = 1e-08 Identities = 33/104 (31%), Positives = 61/104 (58%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 ++ + G EV+D+ L + FS+F KV+RD GK+KG+GFVS+ D A++EM Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEM 251 Query: 426 NGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKGI 295 NGK + + I + ++ K E L+R+ ++++ ++ +G+ Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAE-LKRKFEQLKQERISRYQGV 294 Score = 47.4 bits (111), Expect = 4e-05 Identities = 25/80 (31%), Positives = 42/80 (52%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ GDL ++V + +L + FS +V RD T ++ GY +V+F P D A+ M Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72 Query: 426 NGKYVGNRPIKLRKSNWKER 367 N + +PI++ W +R Sbjct: 73 NFDVIKGKPIRIM---WSQR 89 Score = 39.3 bits (90), Expect = 0.012 Identities = 31/101 (30%), Positives = 49/101 (48%) Frame = -2 Query: 654 SWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGF 475 S DP+L + + +F +L +++ L FS F + KVV D+ +KGY F Sbjct: 87 SQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAF 142 Query: 474 VSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEA 352 V F AI++MNG + +R K+ +K R + EA Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKSRKEREA 181
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 62.4 bits (150), Expect = 1e-09 Identities = 29/73 (39%), Positives = 46/73 (63%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 +LF G L E N+D L +AF+++ + VV+D+ T +++G+GFV+F N D A+ Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65 Query: 429 MNGKYVGNRPIKL 391 MNGK V R I++ Sbjct: 66 MNGKSVDGRQIRV 78
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 61.6 bits (148), Expect = 2e-09 Identities = 29/80 (36%), Positives = 47/80 (58%) Frame = -2 Query: 621 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAA 442 E +YR F G L D L + FS+F +K++ D+ TG+++G+GFV+F + + Sbjct: 3 EVEYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKD 62 Query: 441 AIKEMNGKYVGNRPIKLRKS 382 AI EMNGK + R I + ++ Sbjct: 63 AIDEMNGKELDGRTITVNEA 82
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 61.2 bits (147), Expect = 3e-09 Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 1/85 (1%) Frame = -2 Query: 618 NDYRLFCGDLGNEVNDDVLSKAF-SRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAA 442 N+ +F GDL V + L + F +R+ S + AK+V D+ TG +KGYGFV F+N + Sbjct: 161 NNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQL 220 Query: 441 AIKEMNGKYVGNRPIKLRKSNWKER 367 A+ EM G ++ R IK+ ++ +++ Sbjct: 221 ALSEMQGVFLNGRAIKVGPTSGQQQ 245 Score = 30.4 bits (67), Expect = 5.5 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%) Frame = -2 Query: 648 EDPTLTEWPE-NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFV 472 + P+L + + N+ +F G L + V +D L F F + K+ K G FV Sbjct: 300 QQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCG------FV 353 Query: 471 SFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQ 340 + + AAI M G + N ++L +W AL +Q Sbjct: 354 QYVDRLSAEAAIAGMQGFPIANSRVRL---SWGRSAKQTALLQQ 394
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 60.8 bits (146), Expect = 4e-09 Identities = 35/121 (28%), Positives = 69/121 (57%), Gaps = 3/121 (2%) Frame = -2 Query: 693 AKKKTIPRRAAGQSWEDPTLTEWPEND-YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV 517 A+KK+ + +E + + ++ L+ +L + V+D+ L + FS + + +KV Sbjct: 304 AQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKV 363 Query: 516 VRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKE--RTDVEALQR 343 + + + G ++G+GFV++SNP + A+ EMNGK +G +P+ + + KE R ++AL Sbjct: 364 MLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFS 422 Query: 342 Q 340 Q Sbjct: 423 Q 423 Score = 47.0 bits (110), Expect = 6e-05 Identities = 27/101 (26%), Positives = 58/101 (57%), Gaps = 1/101 (0%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 ++ +L E+ +D L K F +F + A V+RD+ +G ++ +GFV+F A+A+++M Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKM 289 Query: 426 NGKYVGNRPIKLRKSNWKERTDVEALQR-QKNHIQKKPKTQ 307 NG +G+ + + ++ K + E ++ ++ I + K+Q Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQ 330 Score = 44.7 bits (104), Expect = 3e-04 Identities = 23/70 (32%), Positives = 38/70 (54%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F +L +++ L + FS F + KV D TG++KGYGFV F AAI ++ Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKL 196 Query: 426 NGKYVGNRPI 397 NG + ++ + Sbjct: 197 NGMLMNDKQV 206 Score = 44.7 bits (104), Expect = 3e-04 Identities = 24/76 (31%), Positives = 42/76 (55%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ GDL +V + L F + +V RD+ ++ GY +++FSNP D A++ + Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEAL 109 Query: 426 NGKYVGNRPIKLRKSN 379 N + +RPI++ SN Sbjct: 110 NYTPLFDRPIRIMLSN 125
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 60.1 bits (144), Expect = 6e-09 Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 18/136 (13%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ +L + ++D+ L KAFS F + AKV+ + G++KG+GFV FS+P + A+ EM Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 426 NGKYVGNRPIKLRKSNWKERTDV----EALQRQKN--------------HIQKKPKTQKK 301 NG+ V +P+ + + KE E +QR + + P+TQ Sbjct: 354 NGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNH 413 Query: 300 GILHK*SSIGLYRVSP 253 + S I R SP Sbjct: 414 AAYYPPSQIARLRPSP 429 Score = 51.6 bits (122), Expect = 2e-06 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 7/88 (7%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 ++ + G +++D+ L F +F KV+ D+ +GK+KG+GFVSF D A+ EM Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 426 NGK-------YVGNRPIKLRKSNWKERT 364 NGK YVG K+ + +RT Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRT 279 Score = 40.4 bits (93), Expect = 0.005 Identities = 32/101 (31%), Positives = 47/101 (46%) Frame = -2 Query: 654 SWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGF 475 S DP+L + + +F +L +N+ L S F + VV D+ +KGYGF Sbjct: 87 SQRDPSLRKSGVGN--IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGF 142 Query: 474 VSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEA 352 V F AIK+MNG + R K+ +K R + EA Sbjct: 143 VHFETHEAAERAIKKMNGMLLNGR--KVFVGQFKSRKEREA 181
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 59.7 bits (143), Expect = 8e-09 Identities = 27/81 (33%), Positives = 49/81 (60%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 P+ +YR F G L +D L AFS++ +K++ D+ TG+++G+GFV+F + + Sbjct: 4 PDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMK 63 Query: 444 AAIKEMNGKYVGNRPIKLRKS 382 AI+ MNG+ + R I + ++ Sbjct: 64 DAIEGMNGQDLDGRSITVNEA 84
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 59.3 bits (142), Expect = 1e-08 Identities = 27/78 (34%), Positives = 48/78 (61%) Frame = -2 Query: 615 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI 436 +YR F G L +++ L AF+ + +KV+ D+ TG+++G+GFV+FS+ + AI Sbjct: 7 EYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAI 66 Query: 435 KEMNGKYVGNRPIKLRKS 382 + MNGK + R I + ++ Sbjct: 67 ENMNGKELDGRNITVNQA 84
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 59.3 bits (142), Expect = 1e-08 Identities = 32/96 (33%), Positives = 58/96 (60%), Gaps = 2/96 (2%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 LF +L +EV+D+ L FS F + AK++ D++ GK+KG+GFV ++ P + A+ EM Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEM 424 Query: 426 NGKYVGNRPIKLRKSNWKE--RTDVEALQRQKNHIQ 325 N + + +P+ + + KE R+ +EA + +N + Sbjct: 425 NQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFR 460 Score = 43.1 bits (100), Expect = 8e-04 Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 2/114 (1%) Frame = -2 Query: 654 SWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGF 475 S DP+L + + +F +L +++ L FS F KV D+ G KGYGF Sbjct: 156 SQRDPSLRKMGTGN--VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE-LGNAKGYGF 212 Query: 474 VSFSNPTDLAAAIKEMNGKYVGNRPIKL--RKSNWKERTDVEALQRQKNHIQKK 319 V F + AAI+ +NG + ++ + + S + ++ VEAL+ ++ K Sbjct: 213 VHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIK 266 Score = 42.0 bits (97), Expect = 0.002 Identities = 23/80 (28%), Positives = 40/80 (50%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ G+L V + +L + F+ +V RD T ++ GY +V+F N D A+ E+ Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141 Query: 426 NGKYVGNRPIKLRKSNWKER 367 N + RP ++ W +R Sbjct: 142 NYTLIKGRPCRIM---WSQR 158 Score = 39.7 bits (91), Expect = 0.009 Identities = 24/105 (22%), Positives = 51/105 (48%), Gaps = 1/105 (0%) Frame = -2 Query: 618 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 439 N ++ +L E+ + S F +F +V+D+ K +G+GFV+++N A Sbjct: 259 NFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQND-KPRGFGFVNYANHECAQKA 317 Query: 438 IKEMNGKYVGNRPIKLRKSNWKERTDVEALQR-QKNHIQKKPKTQ 307 + E+N K + + + ++ K + E +R ++ ++K K Q Sbjct: 318 VDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQ 362
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 59.3 bits (142), Expect = 1e-08 Identities = 29/93 (31%), Positives = 54/93 (58%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ +L + ++DD L AFS + + AKV+ D+ G++KG+GFV F+ ++ A+ E+ Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTEL 347 Query: 426 NGKYVGNRPIKLRKSNWKERTDVEALQRQKNHI 328 NG+ VG++P+ + + KE + H+ Sbjct: 348 NGRVVGSKPLYVALAQRKEERKAHLASQYMRHM 380 Score = 50.4 bits (119), Expect = 5e-06 Identities = 28/80 (35%), Positives = 41/80 (51%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ GDL +VN+ L FS +V RD T ++ GY +V+F P D A+ M Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63 Query: 426 NGKYVGNRPIKLRKSNWKER 367 N V N+PI++ W +R Sbjct: 64 NFDLVRNKPIRIM---WSQR 80 Score = 40.4 bits (93), Expect = 0.005 Identities = 24/88 (27%), Positives = 44/88 (50%) Frame = -2 Query: 582 EVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNR 403 + +D+ L + F + KV+ K GK+KG+GFV+F AA++ +NGK +G Sbjct: 193 DFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEG 251 Query: 402 PIKLRKSNWKERTDVEALQRQKNHIQKK 319 K+ + L+R+ +++K Sbjct: 252 KSLYVARAQKKAERQQELKRKFEELKQK 279 Score = 38.5 bits (88), Expect = 0.020 Identities = 22/90 (24%), Positives = 44/90 (48%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F +L +++ + FS F + KV D++ G +KGYGFV F +I ++ Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEK-GNSKGYGFVHFETEEAANTSIDKV 150 Query: 426 NGKYVGNRPIKLRKSNWKERTDVEALQRQK 337 NG + + + + K ++ + E ++ K Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKELGEKAK 180
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 59.3 bits (142), Expect = 1e-08 Identities = 30/83 (36%), Positives = 46/83 (55%) Frame = -2 Query: 639 TLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 460 TL P Y +F +L E + L + F F + K+V+D T + KGYGFVS +N Sbjct: 429 TLASGPGGAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTN 488 Query: 459 PTDLAAAIKEMNGKYVGNRPIKL 391 + A AI+ +NG +GNR +++ Sbjct: 489 YDEAAMAIRALNGYTMGNRVLQV 511 Score = 41.2 bits (95), Expect = 0.003 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 13/117 (11%) Frame = -2 Query: 621 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRT-------------GKTKGY 481 E L L + +D + FS K++RDK G++ GY Sbjct: 182 ETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGY 241 Query: 480 GFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKT 310 GFV++ P D A+ +NG + N+ IK+ + R +A++ ++ PKT Sbjct: 242 GFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFA----RPSSDAIKGANLYVSGLPKT 294 Score = 32.7 bits (73), Expect = 1.1 Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTG-KTKGYGFVSFSNPTDLAAAIKE 430 L+ L + L F+ F + ++++++ +TKG GF+ F + AI Sbjct: 286 LYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIA 345 Query: 429 MNGKYVGN--RPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKGILHK*SSIGLYRVS 256 +NG + PI ++ SN T + + + + G +H + GL R S Sbjct: 346 LNGTTPSSCTDPIVVKFSNTPGSTSKIIQPQLPAFLNPQLVRRIGGAMHTPVNKGLARFS 405 Query: 255 PVEQDLL 235 P+ D+L Sbjct: 406 PMAGDML 412
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 59.3 bits (142), Expect = 1e-08 Identities = 30/83 (36%), Positives = 46/83 (55%) Frame = -2 Query: 639 TLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 460 TL P Y +F +L E + L + F F + K+V+D T + KGYGFVS +N Sbjct: 393 TLASGPGGAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTN 452 Query: 459 PTDLAAAIKEMNGKYVGNRPIKL 391 + A AI+ +NG +GNR +++ Sbjct: 453 YDEAAMAIRALNGYTMGNRVLQV 475 Score = 41.2 bits (95), Expect = 0.003 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 13/117 (11%) Frame = -2 Query: 621 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRT-------------GKTKGY 481 E L L + +D + FS K++RDK G++ GY Sbjct: 146 ETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGY 205 Query: 480 GFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKT 310 GFV++ P D A+ +NG + N+ IK+ + R +A++ ++ PKT Sbjct: 206 GFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFA----RPSSDAIKGANLYVSGLPKT 258 Score = 32.7 bits (73), Expect = 1.1 Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 3/127 (2%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTG-KTKGYGFVSFSNPTDLAAAIKE 430 L+ L + L F+ F + ++++++ +TKG GF+ F + AI Sbjct: 250 LYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIA 309 Query: 429 MNGKYVGN--RPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKGILHK*SSIGLYRVS 256 +NG + PI ++ SN T + + + + G +H + GL R S Sbjct: 310 LNGTTPSSCTDPIVVKFSNTPGSTSKIIQPQLPAFLNPQLVRRIGGAMHTPVNKGLARFS 369 Query: 255 PVEQDLL 235 P+ D+L Sbjct: 370 PMAGDML 376
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 58.9 bits (141), Expect = 1e-08 Identities = 30/77 (38%), Positives = 47/77 (61%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 +LF G L +D L AF+ F AKV+ D+ TG+++G+GFV+F++ AAI E Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 Query: 429 MNGKYVGNRPIKLRKSN 379 M+GK + R I++ +N Sbjct: 96 MDGKELNGRHIRVNPAN 112
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 58.9 bits (141), Expect = 1e-08 Identities = 27/81 (33%), Positives = 49/81 (60%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 P+ +YR F G L ++ L AFS+F +K++ D+ TG+++G+GFV+F + + Sbjct: 4 PDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMK 63 Query: 444 AAIKEMNGKYVGNRPIKLRKS 382 AI+ MNG+ + R I + ++ Sbjct: 64 DAIEGMNGQDLDGRSITVNEA 84
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 58.9 bits (141), Expect = 1e-08 Identities = 27/73 (36%), Positives = 44/73 (60%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 +LF G L + N+ L + FS++ + VV+D+ T +++G+GFV+F N D A+ Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 429 MNGKYVGNRPIKL 391 MNGK V R I++ Sbjct: 67 MNGKSVDGRQIRV 79
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 58.9 bits (141), Expect = 1e-08 Identities = 27/73 (36%), Positives = 44/73 (60%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 +LF G L + N+ L + FS++ + VV+D+ T +++G+GFV+F N D A+ Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 429 MNGKYVGNRPIKL 391 MNGK V R I++ Sbjct: 67 MNGKSVDGRQIRV 79
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 58.9 bits (141), Expect = 1e-08 Identities = 27/73 (36%), Positives = 44/73 (60%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 +LF G L + N+ L + FS++ + VV+D+ T +++G+GFV+F N D A+ Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 429 MNGKYVGNRPIKL 391 MNGK V R I++ Sbjct: 67 MNGKSVDGRQIRV 79
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 58.2 bits (139), Expect = 2e-08 Identities = 27/73 (36%), Positives = 44/73 (60%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 +LF G L + N+ L + FS++ + VV+D+ T +++G+GFV+F N D A+ Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 429 MNGKYVGNRPIKL 391 MNGK V R I++ Sbjct: 67 MNGKSVDGRQIRV 79
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 58.2 bits (139), Expect = 2e-08 Identities = 27/73 (36%), Positives = 44/73 (60%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 +LF G L + N+ L + FS++ + VV+D+ T +++G+GFV+F N D A+ Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 429 MNGKYVGNRPIKL 391 MNGK V R I++ Sbjct: 67 MNGKSVDGRQIRV 79
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 57.8 bits (138), Expect = 3e-08 Identities = 29/79 (36%), Positives = 49/79 (62%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ +L + ++D+ L K F+ F S AKV+ + G++KG+GFV FS+P + A+ EM Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 426 NGKYVGNRPIKLRKSNWKE 370 NG+ V +P+ + + KE Sbjct: 354 NGRIVATKPLYVALAQRKE 372 Score = 49.3 bits (116), Expect = 1e-05 Identities = 28/104 (26%), Positives = 58/104 (55%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 ++ + G +++D+ L + F ++ + KV+ D GK++G+GFVSF D A+ +M Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDM 251 Query: 426 NGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKGI 295 NGK + + I + ++ K E L+R+ +++ T+ +G+ Sbjct: 252 NGKDLNGKAIFVGRAQKKVERQTE-LKRKFEQMKQDRITRYQGV 294 Score = 46.2 bits (108), Expect = 1e-04 Identities = 24/80 (30%), Positives = 41/80 (51%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ GDL +V + +L + FS +V RD T ++ GY +V+F P D A+ M Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72 Query: 426 NGKYVGNRPIKLRKSNWKER 367 N + +P+++ W +R Sbjct: 73 NFDVIKGKPVRIM---WSQR 89 Score = 42.0 bits (97), Expect = 0.002 Identities = 30/106 (28%), Positives = 50/106 (47%) Frame = -2 Query: 654 SWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGF 475 S DP+L + + +F +L +++ L FS F + KVV D+ +KGYGF Sbjct: 87 SQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGF 142 Query: 474 VSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQK 337 V F AI +MNG + +R + + + ++ + E R K Sbjct: 143 VHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 188
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 57.8 bits (138), Expect = 3e-08 Identities = 29/79 (36%), Positives = 49/79 (62%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ +L + ++D+ L K FS F + AKV+ + G++KG+GFV FS+P + A+ EM Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 426 NGKYVGNRPIKLRKSNWKE 370 NG+ V +P+ + + KE Sbjct: 354 NGRIVATKPLYVALAQRKE 372 Score = 55.1 bits (131), Expect = 2e-07 Identities = 31/104 (29%), Positives = 59/104 (56%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 ++ + G +++D+ L + F +F KV+ D+ +GK+KG+GFVSF D A+ EM Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 426 NGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKGI 295 NGK + + I + ++ K E L+R+ +++ T+ +G+ Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTE-LKRKFEQMKQDRITRYQGV 294 Score = 46.2 bits (108), Expect = 1e-04 Identities = 24/80 (30%), Positives = 41/80 (51%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ GDL +V + +L + FS +V RD T ++ GY +V+F P D A+ M Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72 Query: 426 NGKYVGNRPIKLRKSNWKER 367 N + +P+++ W +R Sbjct: 73 NFDVIKGKPVRIM---WSQR 89 Score = 42.7 bits (99), Expect = 0.001 Identities = 30/106 (28%), Positives = 51/106 (48%) Frame = -2 Query: 654 SWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGF 475 S DP+L + + +F +L +++ L FS F + KVV D+ +KGYGF Sbjct: 87 SQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGF 142 Query: 474 VSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQK 337 V F AI++MNG + +R + + + ++ + E R K Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 188
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 57.8 bits (138), Expect = 3e-08 Identities = 29/79 (36%), Positives = 49/79 (62%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ +L + ++D+ L K FS F + AKV+ + G++KG+GFV FS+P + A+ EM Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 426 NGKYVGNRPIKLRKSNWKE 370 NG+ V +P+ + + KE Sbjct: 354 NGRIVATKPLYVALAQRKE 372 Score = 55.1 bits (131), Expect = 2e-07 Identities = 31/104 (29%), Positives = 59/104 (56%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 ++ + G +++D+ L + F +F KV+ D+ +GK+KG+GFVSF D A+ EM Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 426 NGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKGI 295 NGK + + I + ++ K E L+R+ +++ T+ +G+ Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTE-LKRKFEQMKQDRITRYQGV 294 Score = 46.2 bits (108), Expect = 1e-04 Identities = 24/80 (30%), Positives = 41/80 (51%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ GDL +V + +L + FS +V RD T ++ GY +V+F P D A+ M Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72 Query: 426 NGKYVGNRPIKLRKSNWKER 367 N + +P+++ W +R Sbjct: 73 NFDVIKGKPVRIM---WSQR 89 Score = 42.4 bits (98), Expect = 0.001 Identities = 30/106 (28%), Positives = 51/106 (48%) Frame = -2 Query: 654 SWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGF 475 S DP+L + + +F +L +++ L FS F + KVV D+ +KGYGF Sbjct: 87 SQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGF 142 Query: 474 VSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQK 337 V F AI++MNG + +R + + + ++ + E R K Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAK 188
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 57.8 bits (138), Expect = 3e-08 Identities = 29/79 (36%), Positives = 49/79 (62%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ +L + ++D+ L K FS F + AKV+ + G++KG+GFV FS+P + A+ EM Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 426 NGKYVGNRPIKLRKSNWKE 370 NG+ V +P+ + + KE Sbjct: 354 NGRIVATKPLYVALAQRKE 372 Score = 54.3 bits (129), Expect = 4e-07 Identities = 31/104 (29%), Positives = 58/104 (55%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 ++ + G +++D+ L F +F KV+ D+ +GK+KG+GFVSF D A+ EM Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 426 NGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKGI 295 NGK + + I + ++ K E L+R+ +++ T+ +G+ Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTE-LKRKFEQMKQDRITRYQGV 294 Score = 46.2 bits (108), Expect = 1e-04 Identities = 24/80 (30%), Positives = 41/80 (51%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ GDL +V + +L + FS +V RD T ++ GY +V+F P D A+ M Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72 Query: 426 NGKYVGNRPIKLRKSNWKER 367 N + +P+++ W +R Sbjct: 73 NFDVIKGKPVRIM---WSQR 89 Score = 42.7 bits (99), Expect = 0.001 Identities = 30/106 (28%), Positives = 51/106 (48%) Frame = -2 Query: 654 SWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGF 475 S DP+L + + +F +L +++ L FS F + KVV D+ +KGYGF Sbjct: 87 SQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGF 142 Query: 474 VSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQK 337 V F AI++MNG + +R + + + ++ + E R K Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 188
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 57.8 bits (138), Expect = 3e-08 Identities = 29/79 (36%), Positives = 49/79 (62%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ +L + ++D+ L K FS F + AKV+ + G++KG+GFV FS+P + A+ EM Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 426 NGKYVGNRPIKLRKSNWKE 370 NG+ V +P+ + + KE Sbjct: 354 NGRIVATKPLYVALAQRKE 372 Score = 54.3 bits (129), Expect = 4e-07 Identities = 31/104 (29%), Positives = 58/104 (55%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 ++ + G +++D+ L F +F KV+ D+ +GK+KG+GFVSF D A+ EM Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 426 NGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKGI 295 NGK + + I + ++ K E L+R+ +++ T+ +G+ Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTE-LKRKFEQMKQDRITRYQGV 294 Score = 46.2 bits (108), Expect = 1e-04 Identities = 24/80 (30%), Positives = 41/80 (51%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ GDL +V + +L + FS +V RD T ++ GY +V+F P D A+ M Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72 Query: 426 NGKYVGNRPIKLRKSNWKER 367 N + +P+++ W +R Sbjct: 73 NFDVIKGKPVRIM---WSQR 89 Score = 42.7 bits (99), Expect = 0.001 Identities = 30/106 (28%), Positives = 51/106 (48%) Frame = -2 Query: 654 SWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGF 475 S DP+L + + +F +L +++ L FS F + KVV D+ +KGYGF Sbjct: 87 SQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGF 142 Query: 474 VSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQK 337 V F AI++MNG + +R + + + ++ + E R K Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 188
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 57.4 bits (137), Expect = 4e-08 Identities = 26/76 (34%), Positives = 45/76 (59%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 +LF G L E N+ +L F + + +++D RT K++G+ F++F NP D A K+ Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPADAKNAAKD 67 Query: 429 MNGKYVGNRPIKLRKS 382 MNGK + + IK+ ++ Sbjct: 68 MNGKSLHGKAIKVEQA 83
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 57.4 bits (137), Expect = 4e-08 Identities = 24/76 (31%), Positives = 44/76 (57%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 +LF G L E N+ L F ++ +++D+ T K++G+ FV+F +P D A ++ Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68 Query: 429 MNGKYVGNRPIKLRKS 382 MNGK + + IK+ ++ Sbjct: 69 MNGKSLDGKAIKVEQA 84
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 57.0 bits (136), Expect = 5e-08 Identities = 29/79 (36%), Positives = 48/79 (60%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ +L + ++DD L K FS + + AKV+ + G +KG+GFV FS+P + A+ EM Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEM 353 Query: 426 NGKYVGNRPIKLRKSNWKE 370 NG+ V +P+ + + KE Sbjct: 354 NGRIVSTKPLYVALAQRKE 372 Score = 51.2 bits (121), Expect = 3e-06 Identities = 30/104 (28%), Positives = 59/104 (56%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 ++ + G +++D L + FS F + KV+ D TG+++G+GFV++ N + A+ EM Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEM 251 Query: 426 NGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKGI 295 NGK V R I + ++ + E L+R+ I+++ + +G+ Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQGE-LKRKFEQIKQERINRYQGV 294 Score = 48.5 bits (114), Expect = 2e-05 Identities = 25/80 (31%), Positives = 42/80 (52%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ GDL +V + +L + FS +V RD T ++ GY +++F P D A+ M Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72 Query: 426 NGKYVGNRPIKLRKSNWKER 367 N + + RPI++ W +R Sbjct: 73 NFEVIKGRPIRIM---WSQR 89 Score = 38.1 bits (87), Expect = 0.026 Identities = 26/84 (30%), Positives = 42/84 (50%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F +L +++ L FS F + KVV D+ ++GYGFV F AI+ M Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTM 158 Query: 426 NGKYVGNRPIKLRKSNWKERTDVE 355 NG + +R K+ ++K R + E Sbjct: 159 NGMLLNDR--KVFVGHFKSRRERE 180
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 57.0 bits (136), Expect = 5e-08 Identities = 28/86 (32%), Positives = 49/86 (56%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 RL+ G L + +D+L F F +++ D TG++KGYGF++FS+ A+++ Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310 Query: 429 MNGKYVGNRPIKLRKSNWKERTDVEA 352 +NG + RP+K+ + ERTD + Sbjct: 311 LNGFELAGRPMKV--GHVTERTDASS 334
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 57.0 bits (136), Expect = 5e-08 Identities = 28/86 (32%), Positives = 49/86 (56%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 RL+ G L + +D+L F F +++ D TG++KGYGF++FS+ A+++ Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310 Query: 429 MNGKYVGNRPIKLRKSNWKERTDVEA 352 +NG + RP+K+ + ERTD + Sbjct: 311 LNGFELAGRPMKV--GHVTERTDASS 334 Score = 30.8 bits (68), Expect = 4.2 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 1/109 (0%) Frame = -2 Query: 621 ENDYR-LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 E D R +FC L + L + FS +++ D+ + ++KG +V F + + + Sbjct: 149 ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVP 208 Query: 444 AAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKG 298 AI + G+ V PI V+A Q +KN +KG Sbjct: 209 LAI-GLTGQRVLGVPI-----------IVQASQAEKNRAAAMANNLQKG 245
>YHH5_YEAST (P38760) Hypothetical 75.9 kDa protein in SPO13-ARG4 intergenic| region Length = 659 Score = 57.0 bits (136), Expect = 5e-08 Identities = 29/75 (38%), Positives = 44/75 (58%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 LF G+L + V +++L K F R+ SF AKV RD T K+ GYG+++F + D +A KE Sbjct: 113 LFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDAESARKEF 172 Query: 426 NGKYVGNRPIKLRKS 382 N + +K+ S Sbjct: 173 NYTVFFGQEVKIMPS 187
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 56.6 bits (135), Expect = 7e-08 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSF-NMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 +F G+L E+++ +L FS F K++RD TG +KGY F++F++ AAI+ Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161 Query: 429 MNGKYVGNRPI 397 MNG+Y+ NRPI Sbjct: 162 MNGQYLCNRPI 172 Score = 43.1 bits (100), Expect = 8e-04 Identities = 24/79 (30%), Positives = 44/79 (55%) Frame = -2 Query: 615 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI 436 D ++ G L +V++ +L + F + + +D+ TG+ +GYGFV F + D AI Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71 Query: 435 KEMNGKYVGNRPIKLRKSN 379 K MN + +PI++ K++ Sbjct: 72 KIMNMIKLYGKPIRVNKAS 90
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 55.5 bits (132), Expect = 2e-07 Identities = 28/79 (35%), Positives = 47/79 (59%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ +L + ++DD L K FS + + KV+ + G +KG+GFV FS+P + A+ EM Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEM 353 Query: 426 NGKYVGNRPIKLRKSNWKE 370 NG+ V +P+ + + KE Sbjct: 354 NGRIVSTKPLYVALAQRKE 372 Score = 49.7 bits (117), Expect = 9e-06 Identities = 28/104 (26%), Positives = 59/104 (56%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 ++ + G +++D L + FS F + KV+ D +G+++G+GFV++ N + A+ EM Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEM 251 Query: 426 NGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKGI 295 NGK V R + + ++ + E L+R+ I+++ + +G+ Sbjct: 252 NGKEVNGRMVYVGRAQKRIERQGE-LKRKFEQIKQERINRYQGV 294 Score = 48.5 bits (114), Expect = 2e-05 Identities = 25/80 (31%), Positives = 42/80 (52%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ GDL +V + +L + FS +V RD T ++ GY +++F P D A+ M Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72 Query: 426 NGKYVGNRPIKLRKSNWKER 367 N + + RPI++ W +R Sbjct: 73 NFEVIKGRPIRIM---WSQR 89 Score = 37.4 bits (85), Expect = 0.045 Identities = 26/84 (30%), Positives = 42/84 (50%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F +L + +++ L FS F KVV D+ ++GYGFV F AI+ M Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTM 158 Query: 426 NGKYVGNRPIKLRKSNWKERTDVE 355 NG + +R K+ ++K R + E Sbjct: 159 NGMLLNDR--KVFVGHFKSRRERE 180
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 55.5 bits (132), Expect = 2e-07 Identities = 24/73 (32%), Positives = 44/73 (60%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 +LF G L ++ L FS F + VV+D+ T +++G+GF++F+NP + A++ Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66 Query: 429 MNGKYVGNRPIKL 391 MNG+ + R I++ Sbjct: 67 MNGESLDGRQIRV 79
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 55.5 bits (132), Expect = 2e-07 Identities = 23/76 (30%), Positives = 43/76 (56%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 +LF G L E N+ L F ++ +++D+ T K++G+ FV+F +P D ++ Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68 Query: 429 MNGKYVGNRPIKLRKS 382 MNGK + + IK+ ++ Sbjct: 69 MNGKSLDGKAIKVEQA 84
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 55.5 bits (132), Expect = 2e-07 Identities = 28/79 (35%), Positives = 48/79 (60%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ +L + ++D+ L K F F + AKV+ + G++KG+GFV FS+P + A+ EM Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 426 NGKYVGNRPIKLRKSNWKE 370 NG+ V +P+ + + KE Sbjct: 354 NGRIVATKPLYVALAQRKE 372 Score = 53.1 bits (126), Expect = 8e-07 Identities = 30/104 (28%), Positives = 58/104 (55%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 ++ + G+++ND+ L + F ++ KV+ D GK+KG+GFVSF D A+ EM Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVDEM 251 Query: 426 NGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKGI 295 NGK + + + + ++ K E L+R+ +++ T+ +G+ Sbjct: 252 NGKDMNGKSMFVGRAQKKVERQTE-LKRKFEQMKQDRITRYQGV 294 Score = 48.1 bits (113), Expect = 3e-05 Identities = 25/80 (31%), Positives = 41/80 (51%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ GDL +V + +L + FS +V RD T ++ GY +V+F P D A+ M Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72 Query: 426 NGKYVGNRPIKLRKSNWKER 367 N + RP+++ W +R Sbjct: 73 NFDVIKGRPVRIM---WSQR 89 Score = 42.0 bits (97), Expect = 0.002 Identities = 30/106 (28%), Positives = 50/106 (47%) Frame = -2 Query: 654 SWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGF 475 S DP+L + + +F +L +++ L FS F + KVV D+ +KGYGF Sbjct: 87 SQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGF 142 Query: 474 VSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQK 337 V F AI +MNG + +R + + + ++ + E R K Sbjct: 143 VHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 188
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 55.5 bits (132), Expect = 2e-07 Identities = 25/78 (32%), Positives = 47/78 (60%) Frame = -2 Query: 615 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI 436 +YR F G L +D L AF+++ +K++ D+ TG+++G+GFV+F + + AI Sbjct: 7 EYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAI 66 Query: 435 KEMNGKYVGNRPIKLRKS 382 + MNG+ + R I + ++ Sbjct: 67 EGMNGQDLDGRSITVNEA 84
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 55.5 bits (132), Expect = 2e-07 Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 2/88 (2%) Frame = -2 Query: 648 EDPTLTEWPE--NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGF 475 +D + E P D +LF G+L V+ L+ F R + M +V+ DK TG+++G+GF Sbjct: 73 DDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGF 132 Query: 474 VSFSNPTDLAAAIKEMNGKYVGNRPIKL 391 V+ S ++ AA ++ NG + R I++ Sbjct: 133 VTMSTKEEVEAAEQQFNGYEIDGRAIRV 160 Score = 49.7 bits (117), Expect = 9e-06 Identities = 26/85 (30%), Positives = 51/85 (60%) Frame = -2 Query: 621 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAA 442 ++ R++ G+L V+D L + FS + AKVV D+ +G+++G+GFV++S+ ++ Sbjct: 204 DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVND 263 Query: 441 AIKEMNGKYVGNRPIKLRKSNWKER 367 AI +NG + R I++ + + R Sbjct: 264 AIDSLNGVDLDGRSIRVSAAEERPR 288
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 55.1 bits (131), Expect = 2e-07 Identities = 25/75 (33%), Positives = 48/75 (64%) Frame = -2 Query: 615 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI 436 D +LF G+L V+ L++ F + M +V+ DK TG+++G+GFV+ S+ +++ AA Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAA 149 Query: 435 KEMNGKYVGNRPIKL 391 ++ NG + RP+++ Sbjct: 150 QQFNGYELDGRPLRV 164 Score = 48.1 bits (113), Expect = 3e-05 Identities = 23/76 (30%), Positives = 46/76 (60%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 R++ G+L V+D L FS A+V+ D+ +G++KG+GFV++ + ++ AIK Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264 Query: 429 MNGKYVGNRPIKLRKS 382 ++G + R I++ ++ Sbjct: 265 LDGADLDGRQIRVSEA 280
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 54.7 bits (130), Expect = 3e-07 Identities = 29/76 (38%), Positives = 45/76 (59%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ GDL V D L AF + + +V RD T ++ GYG+V+F+NP D A AI+E+ Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97 Query: 426 NGKYVGNRPIKLRKSN 379 N + +PI++ S+ Sbjct: 98 NYIPLYGKPIRVMYSH 113 Score = 52.0 bits (123), Expect = 2e-06 Identities = 29/94 (30%), Positives = 55/94 (58%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ +L ++D+ L + FS F + +KV+RD G +KG GFV+F+ P + A+ ++ Sbjct: 320 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQL 378 Query: 426 NGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQ 325 +GK + ++P+ + + KE V LQ Q + ++ Sbjct: 379 SGKMIESKPLYVAIAQRKEDRRVR-LQAQFSQVR 411 Score = 50.8 bits (120), Expect = 4e-06 Identities = 26/95 (27%), Positives = 49/95 (51%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 ++ +L DD L AF + A V++D GK+KG+GFV+F N D A A++ + Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESL 275 Query: 426 NGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQK 322 NG ++ + ++ K + E R + ++++ Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKE 310 Score = 42.7 bits (99), Expect = 0.001 Identities = 21/70 (30%), Positives = 38/70 (54%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F +L ++ L FS F + KV D +G++KGYGFV ++N AI+++ Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKL 184 Query: 426 NGKYVGNRPI 397 NG + ++ + Sbjct: 185 NGMLLNDKQV 194
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 54.7 bits (130), Expect = 3e-07 Identities = 28/79 (35%), Positives = 47/79 (59%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ +L + ++DD L K F + + AKV+ + G +KG+GFV FS+P + A+ EM Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEM 353 Query: 426 NGKYVGNRPIKLRKSNWKE 370 NG+ V +P+ + + KE Sbjct: 354 NGRIVSTKPLYVALAQRKE 372 Score = 50.1 bits (118), Expect = 7e-06 Identities = 29/104 (27%), Positives = 59/104 (56%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 ++ + G +++D L + FS F + KV+ D +G+++G+GFV++ N + A+ EM Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEM 251 Query: 426 NGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKGI 295 NGK V R I + ++ + E L+R+ I+++ + +G+ Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQSE-LKRKFEQIKQERINRYQGV 294 Score = 46.2 bits (108), Expect = 1e-04 Identities = 24/80 (30%), Positives = 41/80 (51%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ GDL +V + +L + FS +V RD T ++ Y +++F P D A+ M Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72 Query: 426 NGKYVGNRPIKLRKSNWKER 367 N + + RPI++ W +R Sbjct: 73 NFEVIKGRPIRIM---WSQR 89 Score = 37.7 bits (86), Expect = 0.034 Identities = 26/84 (30%), Positives = 42/84 (50%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F +L +++ L FS F + KVV D+ ++GYGFV F AI+ M Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTM 158 Query: 426 NGKYVGNRPIKLRKSNWKERTDVE 355 NG + +R K+ ++K R + E Sbjct: 159 NGMLLNDR--KVFVGHFKSRRERE 180
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 54.7 bits (130), Expect = 3e-07 Identities = 24/73 (32%), Positives = 44/73 (60%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 +LF G L ++ L FS F + VV+D+ T +++G+GF++F+NP + A++ Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66 Query: 429 MNGKYVGNRPIKL 391 MNG+ + R I++ Sbjct: 67 MNGESLDGRQIRV 79
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 54.7 bits (130), Expect = 3e-07 Identities = 27/84 (32%), Positives = 50/84 (59%) Frame = -2 Query: 633 TEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPT 454 +++ E+ Y+++ G+L V +++L FS AKV R T K+ G+GFVSFS+ Sbjct: 177 SQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEE 236 Query: 453 DLAAAIKEMNGKYVGNRPIKLRKS 382 ++ AAI+ +N + + I++ K+ Sbjct: 237 EVEAAIQALNNSVLEGQKIRVNKA 260 Score = 49.7 bits (117), Expect = 9e-06 Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 1/103 (0%) Frame = -2 Query: 621 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAA 442 E RL+ G++ +N+D L + +A+V+ DK +G+++ +GFV+ D A Sbjct: 81 EGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANA 140 Query: 441 AIKEMNGKYVGNRPIKLRKSNWK-ERTDVEALQRQKNHIQKKP 316 I+++N +G R IK+ + E D+ Q + + + P Sbjct: 141 VIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESP 183
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 54.3 bits (129), Expect = 4e-07 Identities = 25/75 (33%), Positives = 45/75 (60%) Frame = -2 Query: 615 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI 436 D +LF G+L V+ L++ F + M +V+ DK TG+++G+GFV+ S ++ AA Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAA 157 Query: 435 KEMNGKYVGNRPIKL 391 ++ NG RP+++ Sbjct: 158 QQFNGYEFEGRPLRV 172 Score = 48.9 bits (115), Expect = 1e-05 Identities = 24/76 (31%), Positives = 45/76 (59%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 RL+ G+L V+D L F+ A+V+ D+ +G++KG+GFV+ S+ ++ AI Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317 Query: 429 MNGKYVGNRPIKLRKS 382 +NG + R I++ ++ Sbjct: 318 LNGADLDGRQIRVSEA 333
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 54.3 bits (129), Expect = 4e-07 Identities = 23/76 (30%), Positives = 43/76 (56%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 +LF G L E N+ L F ++ +++D+ T K++G+ FV+ +P D A ++ Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68 Query: 429 MNGKYVGNRPIKLRKS 382 MNGK + + IK+ ++ Sbjct: 69 MNGKSLDGKAIKVEQA 84
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 54.3 bits (129), Expect = 4e-07 Identities = 29/86 (33%), Positives = 44/86 (51%) Frame = -2 Query: 630 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTD 451 E E +F G L ++D+ L K F A+V+ ++ T +++GYG+V F N + Sbjct: 162 EETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSY 221 Query: 450 LAAAIKEMNGKYVGNRPIKLRKSNWK 373 AI+EM GK + RPI S K Sbjct: 222 AEKAIQEMQGKEIDGRPINCDMSTSK 247 Score = 51.2 bits (121), Expect = 3e-06 Identities = 24/82 (29%), Positives = 43/82 (52%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 LF G+L + D + + F++ ++ T + KG+G+V FSN D A+ + Sbjct: 269 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL 328 Query: 426 NGKYVGNRPIKLRKSNWKERTD 361 G+Y+ NRP++L S+ + D Sbjct: 329 QGEYIDNRPVRLDFSSPRPNND 350
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.9 bits (128), Expect = 5e-07 Identities = 27/80 (33%), Positives = 47/80 (58%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 ++ +L +ND+ L + FS F S + AKV+ + G+ KG+G V FS+ + A+ EM Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 426 NGKYVGNRPIKLRKSNWKER 367 NG+ VG++P+ + + R Sbjct: 362 NGRIVGSKPLHVTLGQARRR 381 Score = 49.7 bits (117), Expect = 9e-06 Identities = 26/80 (32%), Positives = 39/80 (48%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ GDL +V +D+L K F ++ RD T GYG+V+F P D A+ M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 426 NGKYVGNRPIKLRKSNWKER 367 N + +P +L S +R Sbjct: 80 NFDLINGKPFRLMWSQPDDR 99 Score = 49.3 bits (116), Expect = 1e-05 Identities = 25/104 (24%), Positives = 59/104 (56%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F ++G++++D+ L + F + KV+RD +GK+KG+GFV + A+ ++ Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 426 NGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKGI 295 +GK + + + + ++ K+ + L+R+ ++ K K++ G+ Sbjct: 260 HGKSIDGKVLYVGRAQ-KKIERLAELRRRFERLRLKEKSRPPGV 302 Score = 37.4 bits (85), Expect = 0.045 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 8/105 (7%) Frame = -2 Query: 627 WPENDYRL--------FCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFV 472 W + D RL F +L +++ L FS F + KVV D +KGY +V Sbjct: 93 WSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG--SKGYAYV 150 Query: 471 SFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQK 337 F + AI MNG + NR + + + + E E R + Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDR 195
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.9 bits (128), Expect = 5e-07 Identities = 27/80 (33%), Positives = 47/80 (58%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 ++ +L +ND+ L + FS F S + AKV+ + G+ KG+G V FS+ + A+ EM Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 426 NGKYVGNRPIKLRKSNWKER 367 NG+ VG++P+ + + R Sbjct: 362 NGRIVGSKPLHVTLGQARRR 381 Score = 49.7 bits (117), Expect = 9e-06 Identities = 26/80 (32%), Positives = 39/80 (48%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ GDL +V +D+L K F ++ RD T GYG+V+F P D A+ M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 426 NGKYVGNRPIKLRKSNWKER 367 N + +P +L S +R Sbjct: 80 NFDLINGKPFRLMWSQPDDR 99 Score = 49.3 bits (116), Expect = 1e-05 Identities = 25/104 (24%), Positives = 59/104 (56%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F ++G++++D+ L + F + KV+RD +GK+KG+GFV + A+ ++ Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 426 NGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKGI 295 +GK + + + + ++ K+ + L+R+ ++ K K++ G+ Sbjct: 260 HGKSIDGKVLYVGRAQ-KKIERLAELRRRFERLRLKEKSRPPGV 302 Score = 37.4 bits (85), Expect = 0.045 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 8/105 (7%) Frame = -2 Query: 627 WPENDYRL--------FCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFV 472 W + D RL F +L +++ L FS F + KVV D +KGY +V Sbjct: 93 WSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG--SKGYAYV 150 Query: 471 SFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQK 337 F + AI MNG + NR + + + + E E R + Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDR 195
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.9 bits (128), Expect = 5e-07 Identities = 27/80 (33%), Positives = 47/80 (58%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 ++ +L +ND+ L + FS F S + AKV+ + G+ KG+G V FS+ + A+ EM Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 426 NGKYVGNRPIKLRKSNWKER 367 NG+ VG++P+ + + R Sbjct: 362 NGRVVGSKPLHVTLGQARRR 381 Score = 49.7 bits (117), Expect = 9e-06 Identities = 26/80 (32%), Positives = 39/80 (48%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ GDL +V +D+L K F ++ RD T GYG+V+F P D A+ M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 426 NGKYVGNRPIKLRKSNWKER 367 N + +P +L S +R Sbjct: 80 NFDLINGKPFRLMWSQPDDR 99 Score = 49.3 bits (116), Expect = 1e-05 Identities = 25/104 (24%), Positives = 59/104 (56%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F ++G++++D+ L + F + KV+RD +GK+KG+GFV + A+ ++ Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 426 NGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKGI 295 +GK + + + + ++ K+ + L+R+ ++ K K++ G+ Sbjct: 260 HGKSIDGKVLYVGRAQ-KKIERLAELRRRFERLRLKEKSRPPGV 302 Score = 37.4 bits (85), Expect = 0.045 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 8/105 (7%) Frame = -2 Query: 627 WPENDYRL--------FCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFV 472 W + D RL F +L +++ L FS F + KVV D +KGY +V Sbjct: 93 WSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG--SKGYAYV 150 Query: 471 SFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQK 337 F + AI MNG + NR + + + + E E R + Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDR 195
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.9 bits (128), Expect = 5e-07 Identities = 27/80 (33%), Positives = 47/80 (58%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 ++ +L +ND+ L + FS F S + AKV+ + G+ KG+G V FS+ + A+ EM Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 426 NGKYVGNRPIKLRKSNWKER 367 NG+ VG++P+ + + R Sbjct: 362 NGRIVGSKPLHVTLGQARRR 381 Score = 49.7 bits (117), Expect = 9e-06 Identities = 26/80 (32%), Positives = 39/80 (48%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ GDL +V +D+L K F ++ RD T GYG+V+F P D A+ M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 426 NGKYVGNRPIKLRKSNWKER 367 N + +P +L S +R Sbjct: 80 NFDLINGKPFRLMWSQPDDR 99 Score = 49.3 bits (116), Expect = 1e-05 Identities = 25/104 (24%), Positives = 59/104 (56%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F ++G++++D+ L + F + KV+RD +GK+KG+GFV + A+ ++ Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 426 NGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKGI 295 +GK + + + + ++ K+ + L+R+ ++ K K++ G+ Sbjct: 260 HGKSIDGKVLYVGRAQ-KKIERLAELRRRFERLRLKEKSRPPGV 302 Score = 37.4 bits (85), Expect = 0.045 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 8/105 (7%) Frame = -2 Query: 627 WPENDYRL--------FCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFV 472 W + D RL F +L +++ L FS F + KVV D +KGY +V Sbjct: 93 WSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG--SKGYAYV 150 Query: 471 SFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQK 337 F + AI MNG + NR + + + + E E R + Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDR 195
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.9 bits (128), Expect = 5e-07 Identities = 27/80 (33%), Positives = 47/80 (58%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 ++ +L +ND+ L + FS F S + AKV+ + G+ KG+G V FS+ + A+ EM Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 426 NGKYVGNRPIKLRKSNWKER 367 NG+ VG++P+ + + R Sbjct: 362 NGRIVGSKPLHVTLGQARRR 381 Score = 49.7 bits (117), Expect = 9e-06 Identities = 26/80 (32%), Positives = 39/80 (48%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ GDL +V +D+L K F ++ RD T GYG+V+F P D A+ M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 426 NGKYVGNRPIKLRKSNWKER 367 N + +P +L S +R Sbjct: 80 NFDLINGKPFRLMWSQPDDR 99 Score = 49.3 bits (116), Expect = 1e-05 Identities = 25/104 (24%), Positives = 59/104 (56%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F ++G++++D+ L + F + KV+RD +GK+KG+GFV + A+ ++ Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 426 NGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKGI 295 +GK + + + + ++ K+ + L+R+ ++ K K++ G+ Sbjct: 260 HGKSIDGKVLYVGRAQ-KKIERLAELRRRFERLRLKEKSRPPGV 302 Score = 37.4 bits (85), Expect = 0.045 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 8/105 (7%) Frame = -2 Query: 627 WPENDYRL--------FCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFV 472 W + D RL F +L +++ L FS F + KVV D +KGY +V Sbjct: 93 WSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG--SKGYAYV 150 Query: 471 SFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQK 337 F + AI MNG + NR + + + + E E R + Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDR 195
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.9 bits (128), Expect = 5e-07 Identities = 27/80 (33%), Positives = 47/80 (58%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 ++ +L +ND+ L + FS F S + AKV+ + G+ KG+G V FS+ + A+ EM Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 426 NGKYVGNRPIKLRKSNWKER 367 NG+ VG++P+ + + R Sbjct: 362 NGRIVGSKPLHVTLGQARRR 381 Score = 49.7 bits (117), Expect = 9e-06 Identities = 26/80 (32%), Positives = 39/80 (48%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ GDL +V +D+L K F ++ RD T GYG+V+F P D A+ M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 426 NGKYVGNRPIKLRKSNWKER 367 N + +P +L S +R Sbjct: 80 NFDLINGKPFRLMWSQPDDR 99 Score = 49.3 bits (116), Expect = 1e-05 Identities = 25/104 (24%), Positives = 59/104 (56%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F ++G++++D+ L + F + KV+RD +GK+KG+GFV + A+ ++ Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDL 259 Query: 426 NGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKGI 295 +GK + + + + ++ K+ + L+R+ ++ K K++ G+ Sbjct: 260 HGKSIDGKVLYVGRAQ-KKIERLAELRRRFERLRLKEKSRPPGV 302 Score = 37.4 bits (85), Expect = 0.045 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 8/105 (7%) Frame = -2 Query: 627 WPENDYRL--------FCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFV 472 W + D RL F +L +++ L FS F + KVV D +KGY +V Sbjct: 93 WSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG--SKGYAYV 150 Query: 471 SFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQK 337 F + AI MNG + NR + + + + E E R + Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDR 195
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 53.5 bits (127), Expect = 6e-07 Identities = 24/85 (28%), Positives = 51/85 (60%) Frame = -2 Query: 621 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAA 442 E YR++ G++ ++D L + FS A+VV D+ TG+++G+GFV+ ++ +++ Sbjct: 227 EQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSD 286 Query: 441 AIKEMNGKYVGNRPIKLRKSNWKER 367 AI ++G+ + R I++ + + R Sbjct: 287 AIANLDGQSLDGRTIRVNVAEDRSR 311
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 53.5 bits (127), Expect = 6e-07 Identities = 27/70 (38%), Positives = 43/70 (61%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 LF +L + V+D+ L + F+ + + AKV+R + GK+KG+GFV FS P + AI E Sbjct: 323 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTEN-GKSKGFGFVCFSTPEEATKAITEK 381 Query: 426 NGKYVGNRPI 397 N + V +P+ Sbjct: 382 NQQIVAGKPL 391 Score = 43.1 bits (100), Expect = 8e-04 Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 1/114 (0%) Frame = -2 Query: 645 DPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSF 466 D L E + L+ ++ +E D+ + F++F A + +D GK KG+GFV++ Sbjct: 207 DSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDA-DGKLKGFGFVNY 265 Query: 465 SNPTDLAAAIKEMNGKYVGNRPIKLRKSNWK-ERTDVEALQRQKNHIQKKPKTQ 307 D A++ +N + + + ++ K ER V Q + ++K K Q Sbjct: 266 EKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQ 319 Score = 40.0 bits (92), Expect = 0.007 Identities = 29/108 (26%), Positives = 51/108 (47%) Frame = -2 Query: 654 SWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGF 475 S DP+L + + +F +L ++++ L FS F +K+ D+ GK+KG+GF Sbjct: 113 SQRDPSLRK--KGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGF 169 Query: 474 VSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQKNH 331 V F AI +NG + + I + ++ D + L+ K H Sbjct: 170 VHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQ-LEETKAH 216 Score = 35.4 bits (80), Expect = 0.17 Identities = 24/80 (30%), Positives = 40/80 (50%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ GDL V++ L FS S + +V RD T + GY +V+F++ AI+++ Sbjct: 39 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 98 Query: 426 NGKYVGNRPIKLRKSNWKER 367 N + R L + W +R Sbjct: 99 NYTPIKGR---LCRIMWSQR 115
>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)| Length = 611 Score = 53.1 bits (126), Expect = 8e-07 Identities = 26/75 (34%), Positives = 43/75 (57%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 LF GDL V ++ L F ++PSF AKV D T K+ G+G+++F + + A++E+ Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152 Query: 426 NGKYVGNRPIKLRKS 382 N V + I++ S Sbjct: 153 NYTKVNGKEIRIMPS 167
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 53.1 bits (126), Expect = 8e-07 Identities = 32/81 (39%), Positives = 44/81 (54%) Frame = -2 Query: 630 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTD 451 E PE LF L E D L + F F + AKV DK+T +K +GFVS+ NP Sbjct: 396 EGPEGA-NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVS 454 Query: 450 LAAAIKEMNGKYVGNRPIKLR 388 AAI+ MNG +G + +K++ Sbjct: 455 AQAAIQSMNGFQIGMKRLKVQ 475
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 53.1 bits (126), Expect = 8e-07 Identities = 32/81 (39%), Positives = 44/81 (54%) Frame = -2 Query: 630 EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTD 451 E PE LF L E D L + F F + AKV DK+T +K +GFVS+ NP Sbjct: 396 EGPEGA-NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVS 454 Query: 450 LAAAIKEMNGKYVGNRPIKLR 388 AAI+ MNG +G + +K++ Sbjct: 455 AQAAIQSMNGFQIGMKRLKVQ 475
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 53.1 bits (126), Expect = 8e-07 Identities = 26/72 (36%), Positives = 44/72 (61%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F +L + ++ VL + F F + N KV+RD T K KG+GFV+ +N + A AI + Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363 Query: 426 NGKYVGNRPIKL 391 NG +G+R +++ Sbjct: 364 NGYRLGDRVLQV 375 Score = 45.1 bits (105), Expect = 2e-04 Identities = 22/67 (32%), Positives = 34/67 (50%) Frame = -2 Query: 591 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYV 412 L + + F K+VRDK TG++ GYGFV++ +P D AI +NG + Sbjct: 58 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 117 Query: 411 GNRPIKL 391 + IK+ Sbjct: 118 QTKTIKV 124 Score = 42.4 bits (98), Expect = 0.001 Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 2/111 (1%) Frame = -2 Query: 615 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI 436 D L+ L + L + FS++ ++++ D+ TG ++G GF+ F + AI Sbjct: 136 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 195 Query: 435 KEMNGKYV--GNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKGILH 289 K +NG+ PI ++ +N + +AL Q + + P + G LH Sbjct: 196 KGLNGQKPSGATEPITVKFANNPSQKSSQALLSQ---LYQSPNRRYPGPLH 243
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 53.1 bits (126), Expect = 8e-07 Identities = 26/72 (36%), Positives = 44/72 (61%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F +L + ++ VL + F F + N KV+RD T K KG+GFV+ +N + A AI + Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351 Query: 426 NGKYVGNRPIKL 391 NG +G+R +++ Sbjct: 352 NGYRLGDRVLQV 363 Score = 45.1 bits (105), Expect = 2e-04 Identities = 22/67 (32%), Positives = 34/67 (50%) Frame = -2 Query: 591 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYV 412 L + + F K+VRDK TG++ GYGFV++ +P D AI +NG + Sbjct: 46 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105 Query: 411 GNRPIKL 391 + IK+ Sbjct: 106 QTKTIKV 112 Score = 42.4 bits (98), Expect = 0.001 Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 2/111 (1%) Frame = -2 Query: 615 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI 436 D L+ L + L + FS++ ++++ D+ TG ++G GF+ F + AI Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183 Query: 435 KEMNGKYV--GNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKGILH 289 K +NG+ PI ++ +N + +AL Q + + P + G LH Sbjct: 184 KGLNGQKPSGATEPITVKFANNPSQKSSQALLSQ---LYQSPNRRYPGPLH 231
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 53.1 bits (126), Expect = 8e-07 Identities = 26/72 (36%), Positives = 44/72 (61%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F +L + ++ VL + F F + N KV+RD T K KG+GFV+ +N + A AI + Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358 Query: 426 NGKYVGNRPIKL 391 NG +G+R +++ Sbjct: 359 NGYRLGDRVLQV 370 Score = 45.1 bits (105), Expect = 2e-04 Identities = 22/67 (32%), Positives = 34/67 (50%) Frame = -2 Query: 591 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYV 412 L + + F K+VRDK TG++ GYGFV++ +P D AI +NG + Sbjct: 53 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 112 Query: 411 GNRPIKL 391 + IK+ Sbjct: 113 QTKTIKV 119 Score = 42.4 bits (98), Expect = 0.001 Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 2/111 (1%) Frame = -2 Query: 615 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI 436 D L+ L + L + FS++ ++++ D+ TG ++G GF+ F + AI Sbjct: 131 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 190 Query: 435 KEMNGKYV--GNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKGILH 289 K +NG+ PI ++ +N + +AL Q + + P + G LH Sbjct: 191 KGLNGQKPSGATEPITVKFANNPSQKSSQALLSQ---LYQSPNRRYPGPLH 238
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 53.1 bits (126), Expect = 8e-07 Identities = 24/65 (36%), Positives = 42/65 (64%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 PEN ++F G L + DD++ + +S+F V+RD T +++G+GFV+FS T++ Sbjct: 19 PENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVD 78 Query: 444 AAIKE 430 AA+K+ Sbjct: 79 AAMKQ 83 Score = 43.1 bits (100), Expect = 8e-04 Identities = 27/117 (23%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Frame = -2 Query: 684 KTI-PRRAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD 508 KT+ P+RA + +D +E + RL+ + + +D+L++ F+++ + ++++ D Sbjct: 91 KTVDPKRAVPR--DDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILD 148 Query: 507 KRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQK 337 K T K +G+GFV+F + + + + + G+R +RK K+ + R + Sbjct: 149 KATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHR-CDVRKGLSKDEMSKAQMNRDR 204
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 53.1 bits (126), Expect = 8e-07 Identities = 23/73 (31%), Positives = 44/73 (60%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 RL+ G L + +D+L F F + +++D TG++KGYGF++FS+ A+++ Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 323 Query: 429 MNGKYVGNRPIKL 391 +NG + RP+++ Sbjct: 324 LNGFELAGRPMRV 336 Score = 29.6 bits (65), Expect = 9.4 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 1/109 (0%) Frame = -2 Query: 621 ENDYR-LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 E D R +FC L + L FS +++ D+ + ++KG +V F + Sbjct: 162 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP 221 Query: 444 AAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKG 298 AI + G+ + PI V+A Q +KN + +KG Sbjct: 222 LAI-GLTGQRLLGVPI-----------IVQASQAEKNRLAAMANNLQKG 258
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 53.1 bits (126), Expect = 8e-07 Identities = 24/85 (28%), Positives = 49/85 (57%) Frame = -2 Query: 615 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI 436 D ++F G+L + L++ F R + M +V+ DK TG+++G+GFV+ S+ ++ AA Sbjct: 86 DLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAAC 145 Query: 435 KEMNGKYVGNRPIKLRKSNWKERTD 361 ++ NG + R +++ E+ + Sbjct: 146 QQFNGYELDGRALRVNSGPPPEKRE 170 Score = 48.5 bits (114), Expect = 2e-05 Identities = 24/77 (31%), Positives = 47/77 (61%) Frame = -2 Query: 621 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAA 442 ++ R++ G+L V+ D L FS AKVV D+ +G+++G+GFV++S+ ++ Sbjct: 185 DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNN 244 Query: 441 AIKEMNGKYVGNRPIKL 391 AI+ ++G + R I++ Sbjct: 245 AIESLDGVDLNGRAIRV 261
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 52.4 bits (124), Expect = 1e-06 Identities = 24/85 (28%), Positives = 49/85 (57%) Frame = -2 Query: 615 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI 436 D ++F G+L + L++ F R + M +V+ DK TG+++G+GFV+ S+ ++ AA Sbjct: 86 DLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAAC 145 Query: 435 KEMNGKYVGNRPIKLRKSNWKERTD 361 ++ NG + R +++ E+ + Sbjct: 146 QQFNGYELDGRALRVNSGPPPEKRE 170 Score = 48.5 bits (114), Expect = 2e-05 Identities = 24/77 (31%), Positives = 47/77 (61%) Frame = -2 Query: 621 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAA 442 ++ R++ G+L V+ D L FS AKVV D+ +G+++G+GFV++S+ ++ Sbjct: 191 DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNN 250 Query: 441 AIKEMNGKYVGNRPIKL 391 AI+ ++G + R I++ Sbjct: 251 AIESLDGVDLNGRAIRV 267
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 52.4 bits (124), Expect = 1e-06 Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 2/88 (2%) Frame = -2 Query: 648 EDPTLTEWPE--NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGF 475 +D + E P D +LF G+L V+ L+ F R + + +V+ DK +G+++G+GF Sbjct: 74 DDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGF 133 Query: 474 VSFSNPTDLAAAIKEMNGKYVGNRPIKL 391 V+ S ++ AA ++ NG + R I++ Sbjct: 134 VTMSTKEEVEAAEQQFNGYEIDGRAIRV 161 Score = 49.3 bits (116), Expect = 1e-05 Identities = 26/85 (30%), Positives = 51/85 (60%) Frame = -2 Query: 621 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAA 442 ++ R++ G+L V+D L + FS + AKVV D+ +G+++G+GFV++S+ ++ Sbjct: 205 DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVND 264 Query: 441 AIKEMNGKYVGNRPIKLRKSNWKER 367 AI +NG + R I++ + + R Sbjct: 265 AIDSLNGIDLDGRSIRVSAAEERPR 289
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 52.4 bits (124), Expect = 1e-06 Identities = 24/83 (28%), Positives = 49/83 (59%) Frame = -2 Query: 621 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAA 442 ++ ++L+ +L + L AF+ P F AKV+ D+ +G+++G+GF++FS+ + + Sbjct: 214 DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNS 273 Query: 441 AIKEMNGKYVGNRPIKLRKSNWK 373 A+ MN + RP++L + K Sbjct: 274 ALDTMNEVELEGRPLRLNVAGQK 296
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 52.4 bits (124), Expect = 1e-06 Identities = 25/78 (32%), Positives = 45/78 (57%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 P + +F +L + ++ +L + F F + KV+RD T K KG+GFV+ +N + A Sbjct: 272 PGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAA 331 Query: 444 AAIKEMNGKYVGNRPIKL 391 AI +NG +G+R +++ Sbjct: 332 MAIASLNGYRLGDRVLQV 349 Score = 47.0 bits (110), Expect = 6e-05 Identities = 23/67 (34%), Positives = 35/67 (52%) Frame = -2 Query: 591 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYV 412 L + + L F K+VRDK TG++ GYGFV++ +P D AI +NG + Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105 Query: 411 GNRPIKL 391 + IK+ Sbjct: 106 QTKTIKV 112 Score = 37.7 bits (86), Expect = 0.034 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 2/94 (2%) Frame = -2 Query: 615 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI 436 D L+ L + L + FS++ ++++ D+ TG ++G GF+ F + AI Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 435 KEMNGKYV--GNRPIKLRKSNWKERTDVEALQRQ 340 K +NG+ PI ++ +N + +A+ Q Sbjct: 184 KGLNGQKPPGATEPITVKFANNPSQKTNQAILSQ 217
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 52.4 bits (124), Expect = 1e-06 Identities = 25/78 (32%), Positives = 45/78 (57%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 P + +F +L + ++ +L + F F + KV+RD T K KG+GFV+ +N + A Sbjct: 272 PGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAA 331 Query: 444 AAIKEMNGKYVGNRPIKL 391 AI +NG +G+R +++ Sbjct: 332 MAIASLNGYRLGDRVLQV 349 Score = 47.0 bits (110), Expect = 6e-05 Identities = 23/67 (34%), Positives = 35/67 (52%) Frame = -2 Query: 591 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYV 412 L + + L F K+VRDK TG++ GYGFV++ +P D AI +NG + Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105 Query: 411 GNRPIKL 391 + IK+ Sbjct: 106 QTKTIKV 112 Score = 37.7 bits (86), Expect = 0.034 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 2/94 (2%) Frame = -2 Query: 615 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI 436 D L+ L + L + FS++ ++++ D+ TG ++G GF+ F + AI Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 435 KEMNGKYV--GNRPIKLRKSNWKERTDVEALQRQ 340 K +NG+ PI ++ +N + +A+ Q Sbjct: 184 KGLNGQKPPGATEPITVKFANNPSQKTNQAILSQ 217
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 52.4 bits (124), Expect = 1e-06 Identities = 25/78 (32%), Positives = 45/78 (57%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 P + +F +L + ++ +L + F F + KV+RD T K KG+GFV+ +N + A Sbjct: 272 PGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAA 331 Query: 444 AAIKEMNGKYVGNRPIKL 391 AI +NG +G+R +++ Sbjct: 332 MAIASLNGYRLGDRVLQV 349 Score = 47.0 bits (110), Expect = 6e-05 Identities = 23/67 (34%), Positives = 35/67 (52%) Frame = -2 Query: 591 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYV 412 L + + L F K+VRDK TG++ GYGFV++ +P D AI +NG + Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105 Query: 411 GNRPIKL 391 + IK+ Sbjct: 106 QTKTIKV 112 Score = 37.7 bits (86), Expect = 0.034 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 2/94 (2%) Frame = -2 Query: 615 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI 436 D L+ L + L + FS++ ++++ D+ TG ++G GF+ F + AI Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 435 KEMNGKYV--GNRPIKLRKSNWKERTDVEALQRQ 340 K +NG+ PI ++ +N + +A+ Q Sbjct: 184 KGLNGQKPPGATEPITVKFANNPSQKTNQAILSQ 217
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 52.4 bits (124), Expect = 1e-06 Identities = 24/72 (33%), Positives = 44/72 (61%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F +LG + ++ +L + F F + KV+RD T K KG+GFV+ +N + A AI + Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305 Query: 426 NGKYVGNRPIKL 391 NG +G++ +++ Sbjct: 306 NGYRLGDKILQV 317 Score = 45.8 bits (107), Expect = 1e-04 Identities = 28/94 (29%), Positives = 44/94 (46%) Frame = -2 Query: 591 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYV 412 L + D L FS AK++RDK G + GYGFV++ D AI +NG + Sbjct: 27 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL 86 Query: 411 GNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKT 310 ++ IK+ + R E ++ +I P+T Sbjct: 87 QSKTIKVSYA----RPSSEVIKDANLYISGLPRT 116
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 52.4 bits (124), Expect = 1e-06 Identities = 25/78 (32%), Positives = 45/78 (57%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 P + +F +L + ++ +L + F F + KV+RD T K KG+GFV+ +N + A Sbjct: 273 PGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAA 332 Query: 444 AAIKEMNGKYVGNRPIKL 391 AI +NG +G+R +++ Sbjct: 333 MAIASLNGYRLGDRVLQV 350 Score = 47.0 bits (110), Expect = 6e-05 Identities = 23/67 (34%), Positives = 35/67 (52%) Frame = -2 Query: 591 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYV 412 L + + L F K+VRDK TG++ GYGFV++ +P D AI +NG + Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105 Query: 411 GNRPIKL 391 + IK+ Sbjct: 106 QTKTIKV 112 Score = 37.7 bits (86), Expect = 0.034 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 2/94 (2%) Frame = -2 Query: 615 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI 436 D L+ L + L + FS++ ++++ D+ TG ++G GF+ F + AI Sbjct: 124 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 Query: 435 KEMNGKYV--GNRPIKLRKSNWKERTDVEALQRQ 340 K +NG+ PI ++ +N + +A+ Q Sbjct: 184 KGLNGQKPPGATEPITVKFANNPSQKTNQAILSQ 217
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 52.0 bits (123), Expect = 2e-06 Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 4/107 (3%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 RL +L + ++D L F++F + + R K GK +G+GFV F N + A+K Sbjct: 114 RLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPR-KPDGKMRGFGFVQFKNLLEAGKALKG 172 Query: 429 MNGKYVGNRPI----KLRKSNWKERTDVEALQRQKNHIQKKPKTQKK 301 MN K + R + + K +K+ V A+ +K+H K ++ KK Sbjct: 173 MNMKEIKGRTVAVDWAVAKDKYKDTQSVSAIGEEKSHESKHQESVKK 219 Score = 40.8 bits (94), Expect = 0.004 Identities = 26/107 (24%), Positives = 47/107 (43%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 LF G L + L + FS+ VV +K + +G+G+V+FS D+ A+KE+ Sbjct: 5 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Query: 426 NGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKGILHK 286 + + K + +T + +K+PK +K + K Sbjct: 65 TTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADK 111
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 52.0 bits (123), Expect = 2e-06 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 4/102 (3%) Frame = -2 Query: 672 RRAAGQSWEDPTLTEWPENDYR----LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDK 505 R+A S E P P D +F G L V+D L + F + + A+V+ D Sbjct: 239 RKAEPASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDG 298 Query: 504 RTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSN 379 ++G++KGYG+V F P AA+ K + R + L SN Sbjct: 299 QSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSN 340 Score = 48.9 bits (115), Expect = 1e-05 Identities = 25/72 (34%), Positives = 40/72 (55%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F G+L +D LS AF ++ D ++G+ KG+G+V+FS+ D A EM Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSD-IDSAKKCVEM 426 Query: 426 NGKYVGNRPIKL 391 NG ++ RP +L Sbjct: 427 NGHFIAGRPCRL 438
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 52.0 bits (123), Expect = 2e-06 Identities = 26/72 (36%), Positives = 42/72 (58%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F +L E ++ VL + F F + KV+RD T K KG+GFV+ +N + A AI + Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 426 NGKYVGNRPIKL 391 NG +G R +++ Sbjct: 346 NGYRLGERVLQV 357 Score = 49.7 bits (117), Expect = 9e-06 Identities = 28/97 (28%), Positives = 46/97 (47%) Frame = -2 Query: 591 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYV 412 L + D F K+VRDK TG++ GYGFV++S+P D AI +NG + Sbjct: 46 LPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKL 105 Query: 411 GNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKK 301 + IK+ + R +++ ++ PKT + Sbjct: 106 QTKTIKVSYA----RPSSASIRDANLYVSGLPKTMSQ 138 Score = 40.0 bits (92), Expect = 0.007 Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 2/111 (1%) Frame = -2 Query: 615 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI 436 D L+ L ++ + + FS++ ++++ D+ TG ++G GF+ F + AI Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAI 183 Query: 435 KEMNG-KYVG-NRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKGILH 289 K +NG K +G PI ++ +N + +AL H+ + + G LH Sbjct: 184 KGLNGQKPLGAAEPITVKFANNPSQKTGQAL---LTHLYQSSARRYAGPLH 231
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 52.0 bits (123), Expect = 2e-06 Identities = 26/72 (36%), Positives = 42/72 (58%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F +L E ++ VL + F F + KV+RD T K KG+GFV+ +N + A AI + Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 426 NGKYVGNRPIKL 391 NG +G R +++ Sbjct: 346 NGYRLGERVLQV 357 Score = 49.7 bits (117), Expect = 9e-06 Identities = 28/97 (28%), Positives = 46/97 (47%) Frame = -2 Query: 591 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYV 412 L + D F K+VRDK TG++ GYGFV++S+P D AI +NG + Sbjct: 46 LPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKL 105 Query: 411 GNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKK 301 + IK+ + R +++ ++ PKT + Sbjct: 106 QTKTIKVSYA----RPSSASIRDANLYVSGLPKTMSQ 138 Score = 38.9 bits (89), Expect = 0.015 Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 2/111 (1%) Frame = -2 Query: 615 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI 436 D L+ L ++ + + FS++ ++++ D+ TG ++G GF+ F + AI Sbjct: 124 DANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183 Query: 435 KEMNG-KYVG-NRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKGILH 289 K +NG K +G PI ++ +N + +AL H+ + + G LH Sbjct: 184 KGLNGQKPLGAAEPITVKFANNPSQKTGQAL---LTHLYQSSARRYAGPLH 231
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 52.0 bits (123), Expect = 2e-06 Identities = 24/72 (33%), Positives = 44/72 (61%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F +LG + ++ +L + F F + KV+RD T K KG+GFV+ +N + A AI + Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASL 305 Query: 426 NGKYVGNRPIKL 391 NG +G++ +++ Sbjct: 306 NGYRLGDKILQV 317 Score = 44.3 bits (103), Expect = 4e-04 Identities = 27/94 (28%), Positives = 44/94 (46%) Frame = -2 Query: 591 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYV 412 L + + L FS AK++RDK G + GYGFV++ D AI +NG + Sbjct: 27 LPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRL 86 Query: 411 GNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKT 310 ++ IK+ + R E ++ +I P+T Sbjct: 87 QSKTIKVSYA----RPSSEVIKDANLYISGLPRT 116
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 51.2 bits (121), Expect = 3e-06 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Frame = -2 Query: 615 DYRLFCGDLGNEVNDDVLSKAF-SRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 439 ++ +F GDL D L F S +PS AK++ D TG ++ YGFV FS+ + A Sbjct: 181 EFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHA 240 Query: 438 IKEMNGKYVGNRPIKLRKSNWKERTDVEA 352 + M G RP+++ ++ K R + A Sbjct: 241 LMHMQGYLCQGRPLRISVASPKSRASIAA 269
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 50.4 bits (119), Expect = 5e-06 Identities = 23/82 (28%), Positives = 46/82 (56%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 P++ ++LF G L N +NDD + + + F +V+D TG +KGY F + + Sbjct: 255 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTD 314 Query: 444 AAIKEMNGKYVGNRPIKLRKSN 379 AI +NG +G++ + +++++ Sbjct: 315 QAIAGLNGMQLGDKKLLVQRAS 336
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 50.4 bits (119), Expect = 5e-06 Identities = 23/82 (28%), Positives = 46/82 (56%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 P++ ++LF G L N +NDD + + + F +V+D TG +KGY F + + Sbjct: 255 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTD 314 Query: 444 AAIKEMNGKYVGNRPIKLRKSN 379 AI +NG +G++ + +++++ Sbjct: 315 QAIAGLNGMQLGDKKLLVQRAS 336
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 50.1 bits (118), Expect = 7e-06 Identities = 25/77 (32%), Positives = 48/77 (62%) Frame = -2 Query: 621 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAA 442 E +R++ G+L +V++ L + FS A+VV D+ TG+++G+GFV+ S+ +L Sbjct: 241 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 300 Query: 441 AIKEMNGKYVGNRPIKL 391 AI ++G+ + R I++ Sbjct: 301 AISALDGQNLEGRAIRV 317 Score = 48.5 bits (114), Expect = 2e-05 Identities = 21/81 (25%), Positives = 47/81 (58%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 P + +LF G+L +VN L+ F + + +A+V+ ++ T +++G+GFV+ S+ + Sbjct: 146 PSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAE 205 Query: 444 AAIKEMNGKYVGNRPIKLRKS 382 A+++ N + R + + K+ Sbjct: 206 TAVEKFNRYDLNGRLLTVNKA 226
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 49.7 bits (117), Expect = 9e-06 Identities = 31/98 (31%), Positives = 49/98 (50%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F G+L +V + + K F S ++VRDK TG KG+G+V F N + A+K Sbjct: 289 VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLN 348 Query: 426 NGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPK 313 N + +G + +R N ++ + R KN KPK Sbjct: 349 NSELMGRKLRVMRSVNKEKFKQQNSNPRLKN--VSKPK 384
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 49.7 bits (117), Expect = 9e-06 Identities = 28/105 (26%), Positives = 56/105 (53%), Gaps = 1/105 (0%) Frame = -2 Query: 615 DYRLFCGDLGNEVND-DVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 439 ++ LF GDL + D+LS +RF S +V+ D TG ++ +GFV F + + A Sbjct: 191 EFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRA 250 Query: 438 IKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQK 304 + EM+GK+ R +++ + + ++ ++Q+ Q + + Q+ Sbjct: 251 LIEMSGKWFQGRALRVAYATPRNNMMLQLQEQQQQQQQLQQQHQQ 295 Score = 30.4 bits (67), Expect = 5.5 Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 8/86 (9%) Frame = -2 Query: 624 PENDYR-------LFCGDLGNEVNDDVLSKAFSRF-PSFNMAKVVRDKRTGKTKGYGFVS 469 P N Y +F G L + + L F F P N+ R K GFV Sbjct: 349 PSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNV-------RIPNGKNCGFVK 401 Query: 468 FSNPTDLAAAIKEMNGKYVGNRPIKL 391 F D A+I+ + G VG PI+L Sbjct: 402 FEKRIDAEASIQGLQGFIVGGSPIRL 427
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 49.7 bits (117), Expect = 9e-06 Identities = 22/91 (24%), Positives = 51/91 (56%), Gaps = 3/91 (3%) Frame = -2 Query: 675 PRRAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTG 496 P++ Q+ E+ + + + ++F G L + +D L + F ++ + K+++D TG Sbjct: 138 PQQQVTQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATG 197 Query: 495 KTKGYGFVSFSNPTDLAAAIKE---MNGKYV 412 +++G+GF+SF P+ + +K ++GK + Sbjct: 198 RSRGFGFLSFEKPSSVDEVVKTQHILDGKVI 228 Score = 39.3 bits (90), Expect = 0.012 Identities = 30/119 (25%), Positives = 62/119 (52%) Frame = -2 Query: 675 PRRAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTG 496 P+RA + +D T ++F G +G +V + FS++ + A+++ DK TG Sbjct: 230 PKRAIPRDEQDKT--------GKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTG 281 Query: 495 KTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKK 319 +++G+GFV++ D A A+ +R + + ++K+R +E + + H+Q+K Sbjct: 282 QSRGFGFVTY----DSADAV---------DRVCQNKFIDFKDR-KIEIKRAEPRHMQQK 326
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 49.3 bits (116), Expect = 1e-05 Identities = 24/85 (28%), Positives = 50/85 (58%) Frame = -2 Query: 621 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAA 442 E R++ G+L +V+ L + FS A+VV D+ TG+++G+GFV+ S+ +++ Sbjct: 146 EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVND 205 Query: 441 AIKEMNGKYVGNRPIKLRKSNWKER 367 AI ++G+ + R +++ + + R Sbjct: 206 AIAALDGQTLDGRAVRVNVAEERPR 230 Score = 45.4 bits (106), Expect = 2e-04 Identities = 21/81 (25%), Positives = 46/81 (56%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 P + +LF G+L +V+ + L+ F +A+V+ ++ T +++G+GFV+ S + Sbjct: 51 PPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAE 110 Query: 444 AAIKEMNGKYVGNRPIKLRKS 382 A++ +NG + R + + K+ Sbjct: 111 KAVELLNGYDMDGRQLTVNKA 131
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 48.9 bits (115), Expect = 1e-05 Identities = 24/64 (37%), Positives = 38/64 (59%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 +L+ G L ++ L AFS F A+V+ +K TG+++GYGFV+F + +AI Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91 Query: 429 MNGK 418 MNG+ Sbjct: 92 MNGQ 95
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 48.9 bits (115), Expect = 1e-05 Identities = 32/147 (21%), Positives = 66/147 (44%), Gaps = 13/147 (8%) Frame = -2 Query: 702 DPAAKKKTIPRRAAGQSWEDPTLTEWPENDY-------------RLFCGDLGNEVNDDVL 562 DP+++ +T+ + A S +D E + RLF +L + ++ L Sbjct: 258 DPSSEPETVSKAGAQHSDDDKAAVESSVEEEEVDTNIEHIRLSSRLFVRNLPYDASESDL 317 Query: 561 SKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKS 382 FS+F V D R+ +KG+ +V + P A KE++GK+ R + + + Sbjct: 318 EPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAYKELDGKHFQGRLMHILPA 377 Query: 381 NWKERTDVEALQRQKNHIQKKPKTQKK 301 K+ ++ + K ++K+ + ++K Sbjct: 378 TAKKTYKIDEHELSKLPLKKQKQIKRK 404 Score = 35.8 bits (81), Expect = 0.13 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 5/131 (3%) Frame = -2 Query: 663 AGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD---KRTGK 493 A + ++P +T LF +L ++ ++ F F A++ KR GK Sbjct: 586 AAEDGDEPVVTS------TLFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGK 639 Query: 492 T--KGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKK 319 T G+GFV F AA+ M+G + + +R SN + A +R++ KK Sbjct: 640 TLSMGFGFVDFRTKAQAQAALAAMDGYKLDQHELVVRASN---KAMDAAEERRREDTAKK 696 Query: 318 PKTQKKGILHK 286 ++ I+ K Sbjct: 697 IAARRTKIIIK 707
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 48.9 bits (115), Expect = 1e-05 Identities = 27/79 (34%), Positives = 45/79 (56%) Frame = -2 Query: 672 RRAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGK 493 RR G+ DP + PE +LF G L E DD L + F ++ + V+RD +T + Sbjct: 18 RRRRGEEGHDP---KEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKR 74 Query: 492 TKGYGFVSFSNPTDLAAAI 436 ++G+GFV++S ++ AA+ Sbjct: 75 SRGFGFVTYSCVEEVDAAM 93
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 48.9 bits (115), Expect = 1e-05 Identities = 27/79 (34%), Positives = 45/79 (56%) Frame = -2 Query: 672 RRAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGK 493 RR G+ DP + PE +LF G L E DD L + F ++ + V+RD +T + Sbjct: 18 RRRRGEEGHDP---KEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKR 74 Query: 492 TKGYGFVSFSNPTDLAAAI 436 ++G+GFV++S ++ AA+ Sbjct: 75 SRGFGFVTYSCVEEVDAAM 93
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 48.9 bits (115), Expect = 1e-05 Identities = 27/79 (34%), Positives = 45/79 (56%) Frame = -2 Query: 672 RRAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGK 493 RR G+ DP + PE +LF G L E DD L + F ++ + V+RD +T + Sbjct: 18 RRRRGEEGHDP---KEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKR 74 Query: 492 TKGYGFVSFSNPTDLAAAI 436 ++G+GFV++S ++ AA+ Sbjct: 75 SRGFGFVTYSCVEEVDAAM 93
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 48.5 bits (114), Expect = 2e-05 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 R++ G + E+ +D + AF+ F + D T K KG+ FV + P A+++ Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190 Query: 429 MNGKYVGNRPIKL-RKSNWKERTDV 358 MNG +G R IK+ R SN + V Sbjct: 191 MNGALMGGRNIKVGRPSNMPQAQQV 215 Score = 33.9 bits (76), Expect = 0.50 Identities = 16/76 (21%), Positives = 37/76 (48%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 R++ + +++++ + F F K+ + KGYGF+ ++N + AI Sbjct: 228 RIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIAS 287 Query: 429 MNGKYVGNRPIKLRKS 382 MN +G + +++ +S Sbjct: 288 MNLFDLGGQLLRVGRS 303
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 48.5 bits (114), Expect = 2e-05 Identities = 30/103 (29%), Positives = 49/103 (47%) Frame = -2 Query: 618 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 439 N L L ++ D L F N +++RD +TG + GY FV F+ TD A Sbjct: 108 NGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRA 167 Query: 438 IKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKT 310 IK +NG V N+ +K+ + R E+++ ++ P+T Sbjct: 168 IKSLNGITVRNKRLKVSYA----RPGGESIKDTNLYVTNLPRT 206 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/64 (31%), Positives = 31/64 (48%) Frame = -2 Query: 615 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI 436 D L+ +L + DD L F ++ ++RDK TGK +G FV F+ + AI Sbjct: 195 DTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAI 254 Query: 435 KEMN 424 +N Sbjct: 255 SALN 258
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 48.5 bits (114), Expect = 2e-05 Identities = 27/70 (38%), Positives = 39/70 (55%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 LF G+L V++ VL FS A V G++KGYGFVS+ + AAI+ M Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160 Query: 426 NGKYVGNRPI 397 N +++ N+PI Sbjct: 161 NNQFLMNKPI 170 Score = 33.1 bits (74), Expect = 0.85 Identities = 18/87 (20%), Positives = 41/87 (47%) Frame = -2 Query: 639 TLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 460 ++ E D ++ G+L +V D +L + + + RD+ G+GF F + Sbjct: 2 SIREDRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLH 61 Query: 459 PTDLAAAIKEMNGKYVGNRPIKLRKSN 379 D+ A + +N + +PI++ +++ Sbjct: 62 EQDVEYACQILNQVKLFGKPIRVNRAS 88
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 48.5 bits (114), Expect = 2e-05 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 1/97 (1%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F G L E+ + + FS++ +VRDK+TGK+KG+ F+ + + A+ Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97 Query: 426 NGKYVGNRPIKL-RKSNWKERTDVEALQRQKNHIQKK 319 NG + R I++ SN++ D E + +Q+K Sbjct: 98 NGIKIKGRTIRVDHVSNYRAPKDSEEIDDVTRQLQEK 134
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 47.8 bits (112), Expect = 3e-05 Identities = 24/67 (35%), Positives = 35/67 (52%) Frame = -2 Query: 591 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYV 412 L ++ D L F N +++RD +TG + GYGFV F + D AI +NG V Sbjct: 85 LPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITV 144 Query: 411 GNRPIKL 391 N+ IK+ Sbjct: 145 RNKRIKV 151
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 47.8 bits (112), Expect = 3e-05 Identities = 21/82 (25%), Positives = 46/82 (56%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 P++ +++F G L N +NDD + + F +V+D TG +KGY F + + + Sbjct: 203 PDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITD 262 Query: 444 AAIKEMNGKYVGNRPIKLRKSN 379 +I +NG +G++ + +++++ Sbjct: 263 QSIAGLNGMQLGDKKLIVQRAS 284
>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3| Length = 486 Score = 47.4 bits (111), Expect = 4e-05 Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 8/138 (5%) Frame = -2 Query: 705 SDPAAKKKTIPRRAAGQSWEDPTLTEW--PENDY---RLFCGDLGNEVNDDVLSKAFSRF 541 ++P TI R A+ QS W PE +F G + +++ + F R+ Sbjct: 4 ANPETPNSTISREASTQSSSAAASQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCFGRY 63 Query: 540 PSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTD 361 S K++ + RTG +KGYGFVSF N D ++++ G + KL+ Sbjct: 64 GSVKEVKIITN-RTGVSKGYGFVSFVNDVD----VQKIVGSQIHFHGKKLKLG------- 111 Query: 360 VEALQRQK---NHIQKKP 316 A+++QK H+Q +P Sbjct: 112 -PAIRKQKLCARHVQPRP 128
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 47.4 bits (111), Expect = 4e-05 Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 2/61 (3%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN--PTDLAAAI 436 +LF G L +V + L + FS+F + A+++ DK++GK +G+GFV F N D AA + Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVV 158 Query: 435 K 433 K Sbjct: 159 K 159 Score = 32.7 bits (73), Expect = 1.1 Identities = 21/80 (26%), Positives = 42/80 (52%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 +LF G L + ++ L F F + VV + +T +++ +GFV++SN + AA+ Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67 Query: 429 MNGKYVGNRPIKLRKSNWKE 370 GN ++L+++ +E Sbjct: 68 SPHAVDGN-TVELKRAVSRE 86
>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1| Length = 744 Score = 47.4 bits (111), Expect = 4e-05 Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 8/138 (5%) Frame = -2 Query: 705 SDPAAKKKTIPRRAAGQSWEDPTLTEW--PENDY---RLFCGDLGNEVNDDVLSKAFSRF 541 ++P TI R A+ QS W PE +F G + +++ + F R+ Sbjct: 334 ANPETPNSTISREASTQSSSAAASQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCFGRY 393 Query: 540 PSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTD 361 S K++ + RTG +KGYGFVSF N D ++++ G + KL+ Sbjct: 394 GSVKEVKIITN-RTGVSKGYGFVSFVNDVD----VQKIVGSQIHFHGKKLKLG------- 441 Query: 360 VEALQRQK---NHIQKKP 316 A+++QK H+Q +P Sbjct: 442 -PAIRKQKLCARHVQPRP 458 Score = 47.4 bits (111), Expect = 4e-05 Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 8/138 (5%) Frame = -2 Query: 705 SDPAAKKKTIPRRAAGQSWEDPTLTEW--PENDY---RLFCGDLGNEVNDDVLSKAFSRF 541 ++P TI R A+ QS W PE +F G + +++ + F R+ Sbjct: 169 ANPETPNSTISREASTQSSSAAASQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCFGRY 228 Query: 540 PSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTD 361 S K++ + RTG +KGYGFVSF N D ++++ G + KL+ Sbjct: 229 GSVKEVKIITN-RTGVSKGYGFVSFVNDVD----VQKIVGSQIHFHGKKLKLG------- 276 Query: 360 VEALQRQK---NHIQKKP 316 A+++QK H+Q +P Sbjct: 277 -PAIRKQKLCARHVQPRP 293 Score = 47.4 bits (111), Expect = 4e-05 Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 8/138 (5%) Frame = -2 Query: 705 SDPAAKKKTIPRRAAGQSWEDPTLTEW--PENDY---RLFCGDLGNEVNDDVLSKAFSRF 541 ++P TI R A+ QS W PE +F G + +++ + F R+ Sbjct: 4 ANPETPNSTISREASTQSSSAAASQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCFGRY 63 Query: 540 PSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTD 361 S K++ + RTG +KGYGFVSF N D ++++ G + KL+ Sbjct: 64 GSVKEVKIITN-RTGVSKGYGFVSFVNDVD----VQKIVGSQIHFHGKKLKLG------- 111 Query: 360 VEALQRQK---NHIQKKP 316 A+++QK H+Q +P Sbjct: 112 -PAIRKQKLCARHVQPRP 128
>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4| Length = 579 Score = 47.4 bits (111), Expect = 4e-05 Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 8/138 (5%) Frame = -2 Query: 705 SDPAAKKKTIPRRAAGQSWEDPTLTEW--PENDY---RLFCGDLGNEVNDDVLSKAFSRF 541 ++P TI R A+ QS W PE +F G + +++ + F R+ Sbjct: 169 ANPETPNSTISREASTQSSSAAASQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCFGRY 228 Query: 540 PSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTD 361 S K++ + RTG +KGYGFVSF N D ++++ G + KL+ Sbjct: 229 GSVKEVKIITN-RTGVSKGYGFVSFVNDVD----VQKIVGSQIHFHGKKLKLG------- 276 Query: 360 VEALQRQK---NHIQKKP 316 A+++QK H+Q +P Sbjct: 277 -PAIRKQKLCARHVQPRP 293 Score = 47.4 bits (111), Expect = 4e-05 Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 8/138 (5%) Frame = -2 Query: 705 SDPAAKKKTIPRRAAGQSWEDPTLTEW--PENDY---RLFCGDLGNEVNDDVLSKAFSRF 541 ++P TI R A+ QS W PE +F G + +++ + F R+ Sbjct: 4 ANPETPNSTISREASTQSSSAAASQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCFGRY 63 Query: 540 PSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTD 361 S K++ + RTG +KGYGFVSF N D ++++ G + KL+ Sbjct: 64 GSVKEVKIITN-RTGVSKGYGFVSFVNDVD----VQKIVGSQIHFHGKKLKLG------- 111 Query: 360 VEALQRQK---NHIQKKP 316 A+++QK H+Q +P Sbjct: 112 -PAIRKQKLCARHVQPRP 128
>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2| Length = 558 Score = 47.4 bits (111), Expect = 4e-05 Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 8/138 (5%) Frame = -2 Query: 705 SDPAAKKKTIPRRAAGQSWEDPTLTEW--PENDY---RLFCGDLGNEVNDDVLSKAFSRF 541 ++P TI R A+ QS W PE +F G + +++ + F R+ Sbjct: 4 ANPETPNSTISREASTQSSSAAASQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCFGRY 63 Query: 540 PSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTD 361 S K++ + RTG +KGYGFVSF N D ++++ G + KL+ Sbjct: 64 GSVKEVKIITN-RTGVSKGYGFVSFVNDVD----VQKIVGSQIHFHGKKLKLG------- 111 Query: 360 VEALQRQK---NHIQKKP 316 A+++QK H+Q +P Sbjct: 112 -PAIRKQKLCARHVQPRP 128
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 47.4 bits (111), Expect = 4e-05 Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F G++ E ++ L FS S ++V D+ TGK KGYGF + + +A++ + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 426 NGKYVGNRPIKL-RKSNWKERTDVEAL 349 NG+ R +++ ++ K + ++++L Sbjct: 78 NGREFSGRALRVDNAASEKNKEELKSL 104
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 47.4 bits (111), Expect = 4e-05 Identities = 30/117 (25%), Positives = 54/117 (46%) Frame = -2 Query: 660 GQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGY 481 G D + + ++ L L ++ D L F N +++RD +TG + GY Sbjct: 109 GSGGSDDLMNDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGY 168 Query: 480 GFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKT 310 FV F++ D AIK +NG V N+ +K+ + R E+++ ++ P+T Sbjct: 169 AFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA----RPGGESIKDTNLYVTNLPRT 221 Score = 43.1 bits (100), Expect = 8e-04 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Frame = -2 Query: 615 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI 436 D L+ +L + DD L F ++ S ++RDK TG+ +G FV ++ + AI Sbjct: 210 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAI 269 Query: 435 KEMNGKYV--GNRPIKLR 388 +N G++P+ +R Sbjct: 270 SALNNVIPEGGSQPLSVR 287
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 47.4 bits (111), Expect = 4e-05 Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F G++ E ++ L FS S ++V D+ TGK KGYGF + + +A++ + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 426 NGKYVGNRPIKL-RKSNWKERTDVEAL 349 NG+ R +++ ++ K + ++++L Sbjct: 78 NGREFSGRALRVDNAASEKNKEELKSL 104
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 47.0 bits (110), Expect = 6e-05 Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 1/71 (1%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSF-NMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 +F G+L EV++ +L FS F + K++RD +G +KG+ F++F++ A++ Sbjct: 102 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEA 161 Query: 429 MNGKYVGNRPI 397 MNG+++ NR I Sbjct: 162 MNGQFLCNRAI 172 Score = 40.0 bits (92), Expect = 0.007 Identities = 22/83 (26%), Positives = 42/83 (50%) Frame = -2 Query: 615 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI 436 D ++ G L +V++ +L + + + +D+ T +G+GFV F D AI Sbjct: 12 DATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAI 71 Query: 435 KEMNGKYVGNRPIKLRKSNWKER 367 K +N + +PIK+ K++ E+ Sbjct: 72 KILNMIKLYGKPIKVNKASAHEK 94
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 47.0 bits (110), Expect = 6e-05 Identities = 33/124 (26%), Positives = 67/124 (54%), Gaps = 1/124 (0%) Frame = -2 Query: 624 PENDY-RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 448 PE Y L+ +L +V++D+L + F+ F + +D+ +GY FV+F NP D Sbjct: 196 PEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDA 254 Query: 447 AAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKGILHK*SSIGL 268 A + +NG G++ + + ++ +++ + E L R+ Q K K +++ ++ K S+I + Sbjct: 255 RRAAETVNGTKFGSKCLYVGRA--QKKAEREQLLRE----QFKEKHEEQKMIAKVSNIYV 308 Query: 267 YRVS 256 V+ Sbjct: 309 KNVN 312 Score = 46.2 bits (108), Expect = 1e-04 Identities = 24/95 (25%), Positives = 50/95 (52%) Frame = -2 Query: 579 VNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRP 400 V ++ L K FS+ + K++ D++ GK+KG+GFV FS P + A+K +G+ +P Sbjct: 315 VTEEELRKHFSQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKP 373 Query: 399 IKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKGI 295 + + + KE ++ + N ++ + + + Sbjct: 374 LYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASV 408 Score = 43.9 bits (102), Expect = 5e-04 Identities = 20/72 (27%), Positives = 39/72 (54%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ GDL V + +L AF+ F S ++ +D +G++ YG+ +F + D AI++ Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85 Query: 426 NGKYVGNRPIKL 391 N + + I++ Sbjct: 86 NNSLLNGKMIRV 97 Score = 39.7 bits (91), Expect = 0.009 Identities = 26/82 (31%), Positives = 41/82 (50%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F +L V + VL F +F + KV GK++GYGFV F AAI+ + Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVAT-LEDGKSRGYGFVQFEQEDAAHAAIQTL 172 Query: 426 NGKYVGNRPIKLRKSNWKERTD 361 N V ++ I + K + ++TD Sbjct: 173 NSTIVADKEIYVGK--FMKKTD 192
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 47.0 bits (110), Expect = 6e-05 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 8/117 (6%) Frame = -2 Query: 705 SDPAAKKKTIPRRAAGQSWEDPT-----LTEWPENDYRLFCGDLGNEVNDDVLSKAFSRF 541 ++P TI R A+ QS T L E +F G + +++ + F+R+ Sbjct: 4 ANPETPNSTISREASTQSSSAATSQGYILPEGKIMPNTVFVGGIDVRMDETEIRSFFARY 63 Query: 540 PSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIK---EMNGKYVGNRPIKLRKSN 379 S K++ D RTG +KGYGFVSF N D+ ++ +GK + P +RK N Sbjct: 64 GSVKEVKIITD-RTGVSKGYGFVSFFNDVDVQKIVESQINFHGKKLKLGP-AIRKQN 118
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 46.6 bits (109), Expect = 7e-05 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 5/97 (5%) Frame = -2 Query: 699 PAAKKKTIPRRAAGQSW-----EDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPS 535 PA PR +A S +D T T ++F G L D L K F F Sbjct: 5 PACSPSVFPRPSAAPSAMHGSRKDTTFT-------KIFVGGLPYHTTDASLRKYFEGFGD 57 Query: 534 FNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMN 424 A V+ D++TGK++GYGFV+ ++ A K+ N Sbjct: 58 IEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPN 94
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 46.6 bits (109), Expect = 7e-05 Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 1/97 (1%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F G L E+ + + FS++ +VRDK+TGK+KG+ F+ + + A+ Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97 Query: 426 NGKYVGNRPIKL-RKSNWKERTDVEALQRQKNHIQKK 319 NG + R I++ SN++ + E + +Q+K Sbjct: 98 NGIKIKGRTIRVDHVSNYRAPQESEDVDDVTRELQEK 134
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 46.2 bits (108), Expect = 1e-04 Identities = 28/92 (30%), Positives = 46/92 (50%) Frame = -2 Query: 621 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAA 442 E D +F G+L V +++L + F + + +D R GK K +GFV F +P ++ Sbjct: 7 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKD-REGKPKSFGFVCFKHPESVSY 65 Query: 441 AIKEMNGKYVGNRPIKLRKSNWKERTDVEALQ 346 AI +NG + RPI ++ R+ A Q Sbjct: 66 AIALLNGIRLYGRPINVQYRFGSSRSSEPANQ 97
>SFRS3_MOUSE (P84104) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) (X16 protein) Length = 164 Score = 46.2 bits (108), Expect = 1e-04 Identities = 24/84 (28%), Positives = 45/84 (53%) Frame = -2 Query: 615 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI 436 D +++ G+LGN N L +AF + V R+ G+ FV F +P D A A+ Sbjct: 9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAV 63 Query: 435 KEMNGKYVGNRPIKLRKSNWKERT 364 +E++G+ + +++ SN ++R+ Sbjct: 64 RELDGRTLCGCRVRVELSNGEKRS 87
>SFRS3_HUMAN (P84103) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) Length = 164 Score = 46.2 bits (108), Expect = 1e-04 Identities = 24/84 (28%), Positives = 45/84 (53%) Frame = -2 Query: 615 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI 436 D +++ G+LGN N L +AF + V R+ G+ FV F +P D A A+ Sbjct: 9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAV 63 Query: 435 KEMNGKYVGNRPIKLRKSNWKERT 364 +E++G+ + +++ SN ++R+ Sbjct: 64 RELDGRTLCGCRVRVELSNGEKRS 87
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 46.2 bits (108), Expect = 1e-04 Identities = 20/75 (26%), Positives = 43/75 (57%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 LF + + + +D L + FS+F + +++R+ T ++G+GF+SFS + +AI + Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162 Query: 426 NGKYVGNRPIKLRKS 382 N + R + ++K+ Sbjct: 163 NSQEFYGRVLNVQKA 177
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 45.8 bits (107), Expect = 1e-04 Identities = 34/133 (25%), Positives = 57/133 (42%) Frame = -2 Query: 699 PAAKKKTIPRRAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAK 520 P K+ R G++ E+ L E RLF +L ++ L K FS++ + Sbjct: 377 PKNTTKSWQGRILGENEEEEDLAE----SGRLFVRNLPYTSTEEDLEKLFSKYGPLSELH 432 Query: 519 VVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQ 340 D T K KG+ F++F P A E++G+ R + + S K+ +A Sbjct: 433 YPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALG 492 Query: 339 KNHIQKKPKTQKK 301 + +KK + Q K Sbjct: 493 SSSYKKKKEAQDK 505 Score = 31.2 bits (69), Expect = 3.2 Identities = 18/44 (40%), Positives = 28/44 (63%) Frame = -2 Query: 522 KVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKL 391 ++VR+ KT GY FV FSN ++ A+K N +Y+G R I++ Sbjct: 323 RIVRNAHGNKT-GYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 364
>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog| Length = 300 Score = 45.8 bits (107), Expect = 1e-04 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 4/81 (4%) Frame = -2 Query: 657 QSWE---DPTLTEWPENDYR-LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 490 Q+W DP + + + YR +F G L ++++ L K F +F ++V+DK T K+ Sbjct: 90 QNWNPNVDPHIKD--TDPYRTIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKS 147 Query: 489 KGYGFVSFSNPTDLAAAIKEM 427 KGY F+ F +P A KE+ Sbjct: 148 KGYAFIVFKDPISSKMAFKEI 168
>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 459 Score = 45.8 bits (107), Expect = 1e-04 Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 8/102 (7%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 PEN LF L D+ L FSRF +V+RDKRTG + Y F+ F N D Sbjct: 246 PENV--LFVCKLNPVTQDEDLQLIFSRFGPILSCEVIRDKRTGDSLQYAFIEFENQKDCE 303 Query: 444 AAIKEMNGKYVGNRPIKLRKS--------NWKERTDVEALQR 343 A +M G + + I + S +W+ T + QR Sbjct: 304 QAYFKMQGVLIDDHRIHVDFSQSVSKLSESWRNATISKRSQR 345
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 45.8 bits (107), Expect = 1e-04 Identities = 28/103 (27%), Positives = 49/103 (47%) Frame = -2 Query: 618 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 439 N L L ++ D L F N ++++D +TG + GY FV F++ D A Sbjct: 83 NGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNA 142 Query: 438 IKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKT 310 IK +NG V N+ +K+ + R E+++ ++ P+T Sbjct: 143 IKSLNGVTVRNKRLKVSYA----RPGGESIKDTNLYVTNLPRT 181 Score = 44.7 bits (104), Expect = 3e-04 Identities = 21/64 (32%), Positives = 33/64 (51%) Frame = -2 Query: 615 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI 436 D L+ +L + DD L K F ++ + ++RDK TGK +G FV F+ + AI Sbjct: 170 DTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAI 229 Query: 435 KEMN 424 +N Sbjct: 230 SALN 233
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 45.8 bits (107), Expect = 1e-04 Identities = 30/118 (25%), Positives = 56/118 (47%) Frame = -2 Query: 663 AGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKG 484 +G S + + + ++ L L ++ D L F N +++RD +TG + G Sbjct: 110 SGGSDDHMMMHDQRSSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFG 169 Query: 483 YGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKT 310 Y FV F++ D AIK +NG V N+ +K+ + R E+++ ++ P+T Sbjct: 170 YAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA----RPGGESIKDTNLYVTNLPRT 223 Score = 43.1 bits (100), Expect = 8e-04 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Frame = -2 Query: 615 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI 436 D L+ +L + DD L F ++ S ++RDK TG+ +G FV ++ + AI Sbjct: 212 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAI 271 Query: 435 KEMNGKYV--GNRPIKLR 388 +N G++P+ +R Sbjct: 272 SALNNVIPEGGSQPLSVR 289
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 45.8 bits (107), Expect = 1e-04 Identities = 21/61 (34%), Positives = 38/61 (62%) Frame = -2 Query: 564 LSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRK 385 L AFS + +K++ D+ T +++G+GFV+FS + +AI+ MNGK + R I + + Sbjct: 3 LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNE 62 Query: 384 S 382 + Sbjct: 63 A 63
>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 45.8 bits (107), Expect = 1e-04 Identities = 28/76 (36%), Positives = 37/76 (48%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 PEN LF L D+ L FSRF + +V+RDKRTG + Y F+ F N D Sbjct: 246 PENV--LFVCKLNPVTQDEDLHLIFSRFGTILSCEVIRDKRTGDSLQYAFIEFENQKDCE 303 Query: 444 AAIKEMNGKYVGNRPI 397 A +M G + + I Sbjct: 304 QAYFKMQGVLIDDHRI 319
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 45.8 bits (107), Expect = 1e-04 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 1/69 (1%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 LF L + ++ L ++F S A++V D+ TG +KG+GFV FS+P D AA + M Sbjct: 555 LFVRGLSEDTTEETLRESFEGSIS---ARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 611 Query: 426 -NGKYVGNR 403 +G+ GN+ Sbjct: 612 EDGEIDGNK 620
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 45.4 bits (106), Expect = 2e-04 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 4/95 (4%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 LF G+L +V DD+L K F ++ + +GK KG+ F+ F N +K+ Sbjct: 241 LFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDK 300 Query: 426 NGKYVGNRPIKLR----KSNWKERTDVEALQRQKN 334 + + + RP+++ +S + R VE + R + Sbjct: 301 SCRKIAGRPLRMEYGEDRSKRQVRKKVENVSRNNS 335
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 45.4 bits (106), Expect = 2e-04 Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 8/117 (6%) Frame = -2 Query: 705 SDPAAKKKTIPRRAAGQSW-----EDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRF 541 ++P TI R A+ QS + L E +F G + +++ + F+R+ Sbjct: 4 ANPETPNSTISREASTQSSSAAASQGYVLPEGKIMPNTVFVGGIDVRMDETEIRSFFARY 63 Query: 540 PSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIK---EMNGKYVGNRPIKLRKSN 379 S K++ D RTG +KGYGFVSF N D+ ++ +GK + P +RK N Sbjct: 64 GSVKEVKIITD-RTGVSKGYGFVSFFNDVDVQKIVESQINFHGKKLKLGP-AIRKQN 118
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 45.4 bits (106), Expect = 2e-04 Identities = 22/87 (25%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F G++ E ++ L FS ++V D+ TGK KGYGF + + +A++ + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 426 NGKYVGNRPIKL-RKSNWKERTDVEAL 349 NG+ R +++ ++ K + ++++L Sbjct: 78 NGREFSGRALRVDNAASEKNKEELKSL 104
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 45.4 bits (106), Expect = 2e-04 Identities = 22/87 (25%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F G++ E ++ L FS ++V D+ TGK KGYGF + + +A++ + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 426 NGKYVGNRPIKL-RKSNWKERTDVEAL 349 NG+ R +++ ++ K + ++++L Sbjct: 78 NGREFSGRALRVDNAASEKNKEELKSL 104
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 45.4 bits (106), Expect = 2e-04 Identities = 22/87 (25%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F G++ E ++ L FS ++V D+ TGK KGYGF + + +A++ + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 426 NGKYVGNRPIKL-RKSNWKERTDVEAL 349 NG+ R +++ ++ K + ++++L Sbjct: 78 NGREFSGRALRVDNAASEKNKEELKSL 104
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 45.4 bits (106), Expect = 2e-04 Identities = 21/79 (26%), Positives = 44/79 (55%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 ++ G+L +V++ L+ F+ + S ++ D+ TG+ +G+GFV + AAI+ + Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62 Query: 426 NGKYVGNRPIKLRKSNWKE 370 +G R +K+ K+ +E Sbjct: 63 DGAEWMGRDLKVNKAKPRE 81
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 45.4 bits (106), Expect = 2e-04 Identities = 22/87 (25%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F G++ E ++ L FS ++V D+ TGK KGYGF + + +A++ + Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 426 NGKYVGNRPIKL-RKSNWKERTDVEAL 349 NG+ R +++ ++ K + ++++L Sbjct: 78 NGREFSGRALRVDNAASEKNKEELKSL 104
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 45.1 bits (105), Expect = 2e-04 Identities = 22/60 (36%), Positives = 35/60 (58%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 R+F G + + N++ L K FS++ S K+V D R G +KGYGF++F D ++E Sbjct: 34 RIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVND-RAGVSKGYGFITFETQEDAQKILQE 92
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 45.1 bits (105), Expect = 2e-04 Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 8/117 (6%) Frame = -2 Query: 705 SDPAAKKKTIPRRAAGQSWEDPT-----LTEWPENDYRLFCGDLGNEVNDDVLSKAFSRF 541 ++P TI R A QS T L E +F G + +++ + F+R+ Sbjct: 4 ANPETPNSTISREANTQSSSAATSQGYVLPEGKIMPNTVFVGGIDVRMDETEIRGFFARY 63 Query: 540 PSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIK---EMNGKYVGNRPIKLRKSN 379 S K++ D RTG +KGYGFVSF N D+ ++ +GK + P +RK N Sbjct: 64 GSVKEVKIITD-RTGVSKGYGFVSFFNDVDVQKIVESQINFHGKKLKLGP-AIRKQN 118
>RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) Length = 448 Score = 45.1 bits (105), Expect = 2e-04 Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Frame = -2 Query: 651 WEDPTLTEWPENDYR-LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGF 475 W+ + E+ +R LF + + ++ L + F + ++ D+ +GK KGY F Sbjct: 88 WDPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAF 147 Query: 474 VSFSNPTDLAAAIKEMNGKYVGNRPI 397 + + + D+ AA K +GK + ++ + Sbjct: 148 IEYEHERDMHAAYKHADGKKIDSKRV 173
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 45.1 bits (105), Expect = 2e-04 Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 4/78 (5%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 +LF G L E + LS+ F RF V+++ +G+++G+GFV+F++PT++ ++ Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67 Query: 429 ----MNGKYVGNRPIKLR 388 ++G+ + +P R Sbjct: 68 GPHTLDGRTIDPKPCNPR 85 Score = 38.5 bits (88), Expect = 0.020 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Frame = -2 Query: 612 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIK 433 Y++F G L + V + L F+R+ ++ D+ K++G+GF+SF + + Sbjct: 96 YKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTN 155 Query: 432 E----MNGKYV 412 E +NGK V Sbjct: 156 ERYINLNGKQV 166
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 45.1 bits (105), Expect = 2e-04 Identities = 23/60 (38%), Positives = 34/60 (56%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 R+F G + + N+ L K FS++ S K+V D R G +KGYGFV+F D ++E Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVND-RAGVSKGYGFVTFETQEDAQKILQE 92
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 45.1 bits (105), Expect = 2e-04 Identities = 23/60 (38%), Positives = 34/60 (56%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 R+F G + + N+ L K FS++ S K+V D R G +KGYGFV+F D ++E Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVND-RAGVSKGYGFVTFETQEDAQKILQE 92
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 45.1 bits (105), Expect = 2e-04 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 11/112 (9%) Frame = -2 Query: 693 AKKKTIPRRAAGQSWEDPTLTEWPENDYR-----------LFCGDLGNEVNDDVLSKAFS 547 A++K +P R Q W P +W E + L+ +L +++++ K Sbjct: 195 ARRKLLPGRI--QLWGHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEK--- 249 Query: 546 RFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKL 391 FN K +R K + Y FV FSN D A+K +NGK + PI++ Sbjct: 250 ---EFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 298 Score = 37.7 bits (86), Expect = 0.034 Identities = 21/73 (28%), Positives = 35/73 (47%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 PE +F G L ++ +D L + +++ D G +GY FV+FSN + Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKLEAK 110 Query: 444 AAIKEMNGKYVGN 406 AIK++N + N Sbjct: 111 NAIKQLNNYEIRN 123
>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein| 15) (One-twenty two protein) Length = 977 Score = 44.7 bits (104), Expect = 3e-04 Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 4/82 (4%) Frame = -2 Query: 624 PENDYR----LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNP 457 PE+D R LF G+L V + L +AF RF + R R G+T YGF+ F N Sbjct: 366 PEDDQRANRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSR-GQTSTYGFLKFENL 424 Query: 456 TDLAAAIKEMNGKYVGNRPIKL 391 A M+GK + PIK+ Sbjct: 425 DMSHRAKLAMSGKIIIRNPIKI 446
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 44.7 bits (104), Expect = 3e-04 Identities = 21/65 (32%), Positives = 36/65 (55%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F G + ++ LS FS++ K++ DK G+ GYGF+S+ + + IKE+ Sbjct: 197 IFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKEL 256 Query: 426 NGKYV 412 NG+ V Sbjct: 257 NGRTV 261 Score = 35.8 bits (81), Expect = 0.13 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 3/75 (4%) Frame = -2 Query: 627 WPENDYRLFCGDLGNEVNDDVLSKAFSRFP---SFNMAKVVRDKRTGKTKGYGFVSFSNP 457 W + D F G ++ V++ S+ N + D G ++GYGFVSF +P Sbjct: 551 WTDEDLYDFYKSFGEIISVKVITVGGSKNKYRQQSNDSSSDNDLPVGSSRGYGFVSFESP 610 Query: 456 TDLAAAIKEMNGKYV 412 D A AI +G V Sbjct: 611 LDAAKAILNTDGYQV 625
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 44.7 bits (104), Expect = 3e-04 Identities = 28/103 (27%), Positives = 49/103 (47%) Frame = -2 Query: 618 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAA 439 N L L ++ D L F N ++++D +TG + GY FV F++ D A Sbjct: 100 NGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNA 159 Query: 438 IKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKT 310 IK +NG V N+ +K+ + R E+++ ++ P+T Sbjct: 160 IKTVNGITVRNKRLKVSYA----RPGGESIKDTNLYVTNLPRT 198 Score = 43.5 bits (101), Expect = 6e-04 Identities = 20/64 (31%), Positives = 33/64 (51%) Frame = -2 Query: 615 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI 436 D L+ +L + DD L K F ++ + ++RDK TG+ +G FV F+ + AI Sbjct: 187 DTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAI 246 Query: 435 KEMN 424 +N Sbjct: 247 SALN 250
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 44.7 bits (104), Expect = 3e-04 Identities = 23/83 (27%), Positives = 48/83 (57%) Frame = -2 Query: 585 NEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGN 406 ++ + +L + P N+ K++ D +TG++KGY F+ F + A+A++ +NG +G+ Sbjct: 28 DQTEEQILDLCSNVGPVINL-KMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS 86 Query: 405 RPIKLRKSNWKERTDVEALQRQK 337 R +K S+ + + V Q+Q+ Sbjct: 87 RFLKCGYSSNSDISGVSQQQQQQ 109
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 44.3 bits (103), Expect = 4e-04 Identities = 22/62 (35%), Positives = 33/62 (53%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 ++F G L D L K F F A V+ D++TGK++GYGFV+ ++ A K+ Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71 Query: 429 MN 424 N Sbjct: 72 PN 73
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 44.3 bits (103), Expect = 4e-04 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 11/112 (9%) Frame = -2 Query: 693 AKKKTIPRRAAGQSWEDPTLTEWPENDYR-----------LFCGDLGNEVNDDVLSKAFS 547 A+++ +P R Q W P +W E + L+ +L +++++ K Sbjct: 195 ARRRLLPGRI--QLWGHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEK--- 249 Query: 546 RFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKL 391 FN K +R K + Y FV FSN D A+K +NGK + PI++ Sbjct: 250 ---EFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 298 Score = 36.6 bits (83), Expect = 0.077 Identities = 20/67 (29%), Positives = 33/67 (49%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 PE +F G L ++ +D L + +++ D G +GY FV+FSN + Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFN-GNNRGYAFVTFSNKQEAK 110 Query: 444 AAIKEMN 424 AIK++N Sbjct: 111 NAIKQLN 117
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 44.3 bits (103), Expect = 4e-04 Identities = 22/101 (21%), Positives = 53/101 (52%) Frame = -2 Query: 657 QSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYG 478 QSW + E+ +N Y ++ G+L E+ + + FS + + RD+ TG+++G+ Sbjct: 21 QSWHN----EYKDNAY-IYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFA 75 Query: 477 FVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVE 355 ++ + + A+ +NG +G R +K+ + ++ + ++ Sbjct: 76 YLKYEDQRSTILAVDNLNGFKIGGRALKIDHTFYRPKRSLQ 116
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 44.3 bits (103), Expect = 4e-04 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 11/112 (9%) Frame = -2 Query: 693 AKKKTIPRRAAGQSWEDPTLTEWPENDYR-----------LFCGDLGNEVNDDVLSKAFS 547 A+++ +P R Q W P +W E + L+ +L +++++ K Sbjct: 195 ARRRLLPGRI--QLWGHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEK--- 249 Query: 546 RFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKL 391 FN K +R K + Y FV FSN D A+K +NGK + PI++ Sbjct: 250 ---EFNSIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 298 Score = 37.7 bits (86), Expect = 0.034 Identities = 21/73 (28%), Positives = 35/73 (47%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 PE +F G L ++ +D L + +++ D G +GY FV+FSN + Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAK 110 Query: 444 AAIKEMNGKYVGN 406 AIK++N + N Sbjct: 111 NAIKQLNNYEIRN 123
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 44.3 bits (103), Expect = 4e-04 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Frame = -2 Query: 651 WEDPTLTEWPENDYR---LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGY 481 W DP PE + LF +L N V +++L KAFS+F K K K Y Sbjct: 322 WADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVK--------KLKDY 373 Query: 480 GFVSFSNPTDLAAAIKEMNGKYVGNRPIKL 391 F+ F A++EMNGK + I++ Sbjct: 374 AFIHFDERDGAVKAMEEMNGKDLEGENIEI 403 Score = 32.3 bits (72), Expect = 1.4 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 6/78 (7%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 P +F G + ++ +D L F + +++ D TG +GY FV+F Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217 Query: 444 AAIKEMN------GKYVG 409 A+K N GK++G Sbjct: 218 EAVKLYNNHEIRSGKHIG 235
>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 265 Score = 43.9 bits (102), Expect = 5e-04 Identities = 25/78 (32%), Positives = 43/78 (55%) Frame = -2 Query: 621 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAA 442 E D LF G+L +V +++L + F + K+ +DK GK K + FV+F + + Sbjct: 7 EADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKLKQFAFVNFKHEVSVPY 65 Query: 441 AIKEMNGKYVGNRPIKLR 388 A+ +NG + RPIK++ Sbjct: 66 AMNLLNGIKLFGRPIKIQ 83
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 43.9 bits (102), Expect = 5e-04 Identities = 25/78 (32%), Positives = 43/78 (55%) Frame = -2 Query: 621 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAA 442 E D LF G+L +V +++L + F + K+ +DK GK K + FV+F + + Sbjct: 7 EADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKPKQFAFVNFKHEVSVPY 65 Query: 441 AIKEMNGKYVGNRPIKLR 388 A+ +NG + RPIK++ Sbjct: 66 AMNLLNGIKLFGRPIKIQ 83
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 43.9 bits (102), Expect = 5e-04 Identities = 22/63 (34%), Positives = 41/63 (65%) Frame = -2 Query: 522 KVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQR 343 K+ ++R G+ G+GFVSF+N D + AI+EMNGK VG+ + ++ + ++E + ++ Sbjct: 249 KLRGEQRRGR--GFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQNDENEK 306 Query: 342 QKN 334 +N Sbjct: 307 NEN 309 Score = 42.7 bits (99), Expect = 0.001 Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 4/107 (3%) Frame = -2 Query: 618 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKV-VRDKRTGKT---KGYGFVSFSNPTD 451 +D+R+F G L + F + + R R G G FV+F+N D Sbjct: 42 DDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQED 101 Query: 450 LAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKT 310 + AI+ +NGK + +R I ++K+ + ++ ++ KN ++P+T Sbjct: 102 VDKAIETLNGKTLDDREIVVQKARPVQEQPIKDRKKSKNKNGEEPET 148
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 43.9 bits (102), Expect = 5e-04 Identities = 25/78 (32%), Positives = 43/78 (55%) Frame = -2 Query: 621 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAA 442 E D LF G+L +V +++L + F + K+ +DK GK K + FV+F + + Sbjct: 7 EADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDK-DGKPKQFAFVNFKHEVSVPY 65 Query: 441 AIKEMNGKYVGNRPIKLR 388 A+ +NG + RPIK++ Sbjct: 66 AMNLLNGIKLYGRPIKIQ 83
>PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 43.9 bits (102), Expect = 5e-04 Identities = 27/76 (35%), Positives = 36/76 (47%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 PEN LF L D+ L FSRF +V+RDKRTG + Y F+ F + D Sbjct: 246 PENV--LFVCKLNPVTQDEDLELIFSRFGKILSCEVIRDKRTGDSLQYAFIEFESQKDCE 303 Query: 444 AAIKEMNGKYVGNRPI 397 A +M G + + I Sbjct: 304 QAYFKMQGVLIDDHRI 319
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 43.9 bits (102), Expect = 5e-04 Identities = 29/130 (22%), Positives = 57/130 (43%) Frame = -2 Query: 690 KKKTIPRRAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVR 511 KK+ P RA Q ++ E RLF ++ ++ K FS F V Sbjct: 319 KKEEQPERAVPQKTDEELAIEKINQTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVAL 378 Query: 510 DKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQKNH 331 D RTG++KG+ +V F + + A E++ + R + + K+ ++ + Sbjct: 379 DTRTGQSKGFAYVLFKDSKNAVNAYVELDKQIFQGRLLHILPGEEKKSHRLDEFDLKNMP 438 Query: 330 IQKKPKTQKK 301 ++K+ + ++K Sbjct: 439 LKKQKELKRK 448 Score = 33.1 bits (74), Expect = 0.85 Identities = 13/44 (29%), Positives = 27/44 (61%) Frame = -2 Query: 522 KVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKL 391 K++RD R G+++ +GF+ + N D A++ NG ++ I++ Sbjct: 47 KILRD-RNGESRRFGFIGYRNEEDAFDAVEYFNGSFINTSKIEV 89 Score = 32.7 bits (73), Expect = 1.1 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 5/81 (6%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD---KRTGKT--KGYGFVSFSNPTDLAA 442 +F +L + L+ F F F +A+V K GKT G+GFV F A Sbjct: 665 IFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTKEQANA 724 Query: 441 AIKEMNGKYVGNRPIKLRKSN 379 I M+G + I+L+ S+ Sbjct: 725 VIAAMDGTVIDGHKIQLKLSH 745
>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1| Length = 476 Score = 43.9 bits (102), Expect = 5e-04 Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 3/65 (4%) Frame = -2 Query: 576 NDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVG---N 406 ++ VL + FS F VVRDK T ++KG FV F+ + A++EM+G+ +G Sbjct: 37 SESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDT 96 Query: 405 RPIKL 391 +PIK+ Sbjct: 97 KPIKV 101 Score = 33.5 bits (75), Expect = 0.65 Identities = 14/53 (26%), Positives = 29/53 (54%) Frame = -2 Query: 573 DDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKY 415 ++ L + F + V+++K TG++KG G+V + P+ A AI+ + + Sbjct: 133 EEDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSF 185
>DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 43.9 bits (102), Expect = 5e-04 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%) Frame = -2 Query: 573 DDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVG---NR 403 + VL + FS F VVRDK T ++KG FV F+ + A++EM+G+ +G + Sbjct: 38 ESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTK 97 Query: 402 PIKL 391 PIK+ Sbjct: 98 PIKV 101 Score = 33.1 bits (74), Expect = 0.85 Identities = 13/53 (24%), Positives = 29/53 (54%) Frame = -2 Query: 573 DDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKY 415 ++ L + F + ++++K TG++KG G+V + P+ A AI+ + + Sbjct: 133 EEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSF 185
>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 43.5 bits (101), Expect = 6e-04 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 3/70 (4%) Frame = -2 Query: 591 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYV 412 + ++ VL + FS F VVRDK T ++KG FV F+ + A++EM+G+ + Sbjct: 32 ISKHTSELVLRERFSPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQACRAMEEMHGQCL 91 Query: 411 G---NRPIKL 391 G +PIK+ Sbjct: 92 GPSDTKPIKV 101 Score = 33.1 bits (74), Expect = 0.85 Identities = 13/53 (24%), Positives = 29/53 (54%) Frame = -2 Query: 573 DDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKY 415 ++ L + F + ++++K TG++KG G+V + P+ A AI+ + + Sbjct: 133 EEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSF 185
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 43.1 bits (100), Expect = 8e-04 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Frame = -2 Query: 651 WEDPTLTEWPENDYR---LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGY 481 W DP PE + LF +L N V +++L K+FS+F K K K Y Sbjct: 232 WADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVK--------KLKDY 283 Query: 480 GFVSFSNPTDLAAAIKEMNGKYVGNRPIKL 391 F+ F A++EMNGK + I++ Sbjct: 284 AFIHFDERDGAVKAMEEMNGKDLEGENIEI 313 Score = 32.3 bits (72), Expect = 1.4 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 6/78 (7%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 P +F G + ++ +D L F + +++ D TG +GY FV+F Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127 Query: 444 AAIKEMN------GKYVG 409 A+K N GK++G Sbjct: 128 EAVKLYNNHEIRSGKHIG 145
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 43.1 bits (100), Expect = 8e-04 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 5/118 (4%) Frame = -2 Query: 657 QSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYG 478 +S E+ +L + E RLF ++ +D K FS + + D RTG++KG+ Sbjct: 316 ESEEEKSLKKIRETG-RLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFA 374 Query: 477 FVSFSNPTDLAAAIKEMN-----GKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKK 319 +V F N + A A E++ G+ + P +KS+ + D++ L +K K+ Sbjct: 375 YVLFKNADNAATAFVELDKQIFQGRLLHILPADAKKSHKLDEFDLKNLPLKKQRELKR 432
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 43.1 bits (100), Expect = 8e-04 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Frame = -2 Query: 651 WEDPTLTEWPENDYR---LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGY 481 W DP PE + LF +L N V +++L K+FS+F K K K Y Sbjct: 322 WADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVK--------KLKDY 373 Query: 480 GFVSFSNPTDLAAAIKEMNGKYVGNRPIKL 391 F+ F A++EMNGK + I++ Sbjct: 374 AFIHFDERDGAVKAMEEMNGKDLEGENIEI 403 Score = 32.3 bits (72), Expect = 1.4 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 6/78 (7%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 P +F G + ++ +D L F + +++ D TG +GY FV+F Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217 Query: 444 AAIKEMN------GKYVG 409 A+K N GK++G Sbjct: 218 EAVKLYNNHEIRSGKHIG 235
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 43.1 bits (100), Expect = 8e-04 Identities = 23/72 (31%), Positives = 39/72 (54%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 PE +LF G L E DD L + F ++ V+RD +T +++G+GFV++S ++ Sbjct: 23 PEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVD 82 Query: 444 AAIKEMNGKYVG 409 A++ K G Sbjct: 83 ASMSARPHKVDG 94
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 43.1 bits (100), Expect = 8e-04 Identities = 23/72 (31%), Positives = 39/72 (54%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 PE +LF G L E DD L + F ++ V+RD +T +++G+GFV++S ++ Sbjct: 23 PEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVD 82 Query: 444 AAIKEMNGKYVG 409 A++ K G Sbjct: 83 ASMSARPHKVDG 94
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 43.1 bits (100), Expect = 8e-04 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 8/113 (7%) Frame = -2 Query: 693 AKKKTIPRRAAGQSWEDPT-----LTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFN 529 A + R A+ QS T L E +F G + +++ + F+R+ S Sbjct: 8 APNSAVSREASTQSSSATTSQGYVLPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVK 67 Query: 528 MAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIK---EMNGKYVGNRPIKLRKSN 379 K++ D RTG +KGYGFVSF N D+ ++ +GK + P +RK N Sbjct: 68 EVKIITD-RTGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGP-AIRKQN 118
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 43.1 bits (100), Expect = 8e-04 Identities = 33/113 (29%), Positives = 52/113 (46%) Frame = -2 Query: 690 KKKTIPRRAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVR 511 KK+ ++ A ++ + P + LF G+L + + L A S + N VV Sbjct: 282 KKEMTKQKEAPEAKKQKVEGSEPTTPFNLFIGNLNPNKSVNELKFAISELFAKNDLAVV- 340 Query: 510 DKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEA 352 D RTG + +G+V F + DL A+ E+ G V IKL K ++ V A Sbjct: 341 DVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGRDSKKVRA 392 Score = 41.6 bits (96), Expect = 0.002 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 LF L + ++ L ++F A++V D+ TG +KG+GFV F++ D AA + M Sbjct: 570 LFVKGLSEDTTEETLKESFE---GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 626 Query: 426 -NGKYVGNR 403 +G+ GN+ Sbjct: 627 EDGEIDGNK 635
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 43.1 bits (100), Expect = 8e-04 Identities = 24/103 (23%), Positives = 49/103 (47%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 RLF +L E + L FS F V D R +KG+ +V +++P A + Sbjct: 296 RLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYRN 355 Query: 429 MNGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKK 301 ++GK R + + ++ K+ ++ + K ++K+ + ++K Sbjct: 356 LDGKIFQGRLLHILPASQKKTYKLDEHELSKLPLKKQKQIKRK 398 Score = 31.2 bits (69), Expect = 3.2 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 5/112 (4%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD---KRTGKT--KGYGFVSFSNPTDLAA 442 LF +L + L +AF F A++ K G+T G+GF F A Sbjct: 594 LFIKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPDPKNPGQTLSMGFGFADFKTKAQAQA 653 Query: 441 AIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKGILHK 286 A+ MNG + + +R S+ + A +R+K KK ++ I+ K Sbjct: 654 ALAVMNGYTLDRHTLVVRASH---KGMDAAEERRKEDTAKKIAARRTKIIIK 702
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 43.1 bits (100), Expect = 8e-04 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 LF L + ++ L +AF S N A++V D+ TG +KG+GFV FS D AA + M Sbjct: 504 LFVRGLSEDTTEETLKEAFDG--SVN-ARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAM 560 Query: 426 -NGKYVGNR 403 +G+ GN+ Sbjct: 561 EDGEIDGNK 569
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 43.1 bits (100), Expect = 8e-04 Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 6/139 (4%) Frame = -2 Query: 699 PAAKKKTIPRRAAGQSWEDPTLT------EWPENDYRLFCGDLGNEVNDDVLSKAFSRFP 538 P K+ QS +P LT + E RLF ++ E +++ FS++ Sbjct: 275 PEVKEVNEVTEVTQQSDNEPELTPEEQIAQKIEETGRLFIRNISYEASEEDFRSLFSQYG 334 Query: 537 SFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDV 358 + + D RTGK+KG+ +V F D A + ++ + R + + ++ K+ + Sbjct: 335 ALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRSLDKQIFQGRLLHILPADKKKDHRL 394 Query: 357 EALQRQKNHIQKKPKTQKK 301 + + ++K+ + +KK Sbjct: 395 DEFDLKNLPLKKQRELKKK 413
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 42.7 bits (99), Expect = 0.001 Identities = 22/57 (38%), Positives = 31/57 (54%) Frame = -2 Query: 594 DLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMN 424 +L E+N+D L F + + RDK TG KG+ FV+F + D A AI E+N Sbjct: 182 NLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELN 238
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 42.7 bits (99), Expect = 0.001 Identities = 28/100 (28%), Positives = 45/100 (45%) Frame = -2 Query: 690 KKKTIPRRAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVR 511 K+ + R+A + +D L + RLF +L + D + F F + + Sbjct: 288 KQAEMQRKAQQAAEKDQKLVDQIMESGRLFIRNLPFAASGDEILAFFESFGTVKQVHIPL 347 Query: 510 DKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKL 391 DK+T +KG FVSFS+P AA + +G R + L Sbjct: 348 DKQTKASKGLAFVSFSDPAHALAAYRAKDGSTFQGRLLHL 387
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 42.7 bits (99), Expect = 0.001 Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 4/105 (3%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNP----TDLAA 442 +LF G L + L FS++ +++DK T +++G+GFV F +P T LA+ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 441 AIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQ 307 ++G+ + +P R + E Q QK+P+T+ Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERSRPREGWQ------QKEPRTE 109 Score = 30.8 bits (68), Expect = 4.2 Identities = 13/74 (17%), Positives = 32/74 (43%) Frame = -2 Query: 657 QSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYG 478 + W+ ++F G + + + L + F+RF ++ D + +G+G Sbjct: 99 EGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFG 158 Query: 477 FVSFSNPTDLAAAI 436 F++F + + A+ Sbjct: 159 FITFEDEQSVDQAV 172
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/72 (30%), Positives = 38/72 (52%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 PE +LF G L E D+ L F ++ + V+RD T +++G+GFV+++ ++ Sbjct: 9 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 68 Query: 444 AAIKEMNGKYVG 409 AA+ K G Sbjct: 69 AAMNARPHKVDG 80
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/72 (30%), Positives = 38/72 (52%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 PE +LF G L E D+ L F ++ + V+RD T +++G+GFV+++ ++ Sbjct: 9 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 68 Query: 444 AAIKEMNGKYVG 409 AA+ K G Sbjct: 69 AAMNARPHKVDG 80
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 42.4 bits (98), Expect = 0.001 Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 5/108 (4%) Frame = -2 Query: 651 WEDPTLTEWPENDYR---LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGY 481 W DP PE + LF +L V +++L K+FS F K K K Y Sbjct: 325 WADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVK--------KLKDY 376 Query: 480 GFVSFSNPTDLAAAIKEMNGKYVGNRPIK--LRKSNWKERTDVEALQR 343 FV F + A+ EMNGK + I+ L K K+R + +A ++ Sbjct: 377 AFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQ 424
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 42.4 bits (98), Expect = 0.001 Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 5/117 (4%) Frame = -2 Query: 702 DPAAKKKTIPRRAA----GQSWEDPTLTEWPENDYR-LFCGDLGNEVNDDVLSKAFSRFP 538 D +A K + R A G +E D R +F G+L ++ D L + F Sbjct: 256 DESAAAKALQRNGAQIAEGFRIRVDLASETASRDKRSVFVGNLPYKIEDSALEEHFLDCG 315 Query: 537 SFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKER 367 S ++VR+ TG +G+G+V F N + A+K N + +G R +++ +S KE+ Sbjct: 316 SIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMG-RKLRVMRSVNKEK 371
>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic| region Length = 220 Score = 42.4 bits (98), Expect = 0.001 Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 2/102 (1%) Frame = -2 Query: 687 KKTIPRRAAGQ--SWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVV 514 K+ P++ A + S + TL E+ ++ L + ++ LSK F++F ++ Sbjct: 67 KRLNPKKQANEKKSKDKKTLEEYSGI---IYVSRLPHGFHEKELSKYFAQFGDLKEVRLA 123 Query: 513 RDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLR 388 R+K+TG ++ YGF+ F N D A + MN + +++R Sbjct: 124 RNKKTGNSRHYGFLEFVNKEDAMIAQESMNNYLLMGHLLQVR 165
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 42.4 bits (98), Expect = 0.001 Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 10/112 (8%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F G+L V++ L + F S ++VR+ TG +G+G+V F N + A+K Sbjct: 287 VFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLN 346 Query: 426 NGKYVGNR----------PIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKK 301 N + +G + +K + SN + D +++ N K+ K+ K Sbjct: 347 NSELMGRKLRVMRSVNKEKLKQQNSNPSVKKDGSKSKQRLNFTSKEGKSHSK 398
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/72 (30%), Positives = 38/72 (52%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 PE +LF G L E D+ L F ++ + V+RD T +++G+GFV+++ ++ Sbjct: 9 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 68 Query: 444 AAIKEMNGKYVG 409 AA+ K G Sbjct: 69 AAMNARPHKVDG 80
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/72 (30%), Positives = 38/72 (52%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 PE +LF G L E D+ L F ++ + V+RD T +++G+GFV+++ ++ Sbjct: 9 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 68 Query: 444 AAIKEMNGKYVG 409 AA+ K G Sbjct: 69 AAMNARPHKVDG 80
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 42.0 bits (97), Expect = 0.002 Identities = 23/92 (25%), Positives = 46/92 (50%) Frame = -2 Query: 666 AAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTK 487 +A + DP+ + P+ RL ++ D L F +F + +++ ++R +K Sbjct: 135 SAAVTQPDPSTSSGPDGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG--SK 192 Query: 486 GYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKL 391 G+GFV+ P D A +E++G + R I++ Sbjct: 193 GFGFVTMERPQDAERARQELHGSMIEGRKIEV 224
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 42.0 bits (97), Expect = 0.002 Identities = 18/54 (33%), Positives = 32/54 (59%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 448 ++F G L + + D L FS+F V+RD T +++G+GFV+F++P + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASV 75 Score = 40.8 bits (94), Expect = 0.004 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%) Frame = -2 Query: 609 RLFCGDLG-NEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIK 433 ++F G L N V +DV + F +F A ++ DK T + +G+GFV+F N D+ + Sbjct: 111 KIFVGGLSANTVVEDV-KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFEN-EDVVEKVC 168 Query: 432 EMNGKYVGNRPIKLRKSNWKE 370 E++ + N+ ++ +K+ KE Sbjct: 169 EIHFHEINNKMVECKKAQPKE 189
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 42.0 bits (97), Expect = 0.002 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 4/104 (3%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNP----TDLAA 442 +LF G L + L FS++ +++DK T +++G+GFV F +P T LA+ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 441 AIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKT 310 ++G+ + +P R ERT R K QK P++ Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQ-PERT------RPKEGWQKGPRS 107
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 42.0 bits (97), Expect = 0.002 Identities = 18/54 (33%), Positives = 32/54 (59%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 448 ++F G L + + D L FS+F V+RD T +++G+GFV+F++P + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASV 75 Score = 40.8 bits (94), Expect = 0.004 Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%) Frame = -2 Query: 609 RLFCGDLG-NEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIK 433 ++F G L N V +DV + F +F A ++ DK T + +G+GFV+F N D+ + Sbjct: 111 KIFVGGLSANTVVEDV-KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFEN-EDVVEKVC 168 Query: 432 EMNGKYVGNRPIKLRKSNWKE 370 E++ + N+ ++ +K+ KE Sbjct: 169 EIHFHEINNKMVECKKAQPKE 189
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 42.0 bits (97), Expect = 0.002 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 4/104 (3%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNP----TDLAA 442 +LF G L + L FS++ +++DK T +++G+GFV F +P T LA+ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 441 AIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKT 310 ++G+ + +P R ERT R K QK P++ Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQ-PERT------RPKEGWQKGPRS 107
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 41.6 bits (96), Expect = 0.002 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 LF L + ++ L ++F A++V D+ TG +KG+GFV F++ D AA + M Sbjct: 575 LFVKGLSEDTTEETLKESFD---GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 631 Query: 426 -NGKYVGNR 403 +G+ GN+ Sbjct: 632 EDGEIDGNK 640 Score = 40.4 bits (93), Expect = 0.005 Identities = 32/107 (29%), Positives = 49/107 (45%) Frame = -2 Query: 690 KKKTIPRRAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVR 511 KK+ ++AA ++ + P + LF G+L + L S + N VV Sbjct: 282 KKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVV- 340 Query: 510 DKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKE 370 D R G T+ +G+V F + DL A+ E+ G V IKL K K+ Sbjct: 341 DVRIGMTRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGKD 386 Score = 35.4 bits (80), Expect = 0.17 Identities = 20/93 (21%), Positives = 37/93 (39%) Frame = -2 Query: 669 RAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 490 + Q + + W L +L ++ L + F + V + GK+ Sbjct: 468 KGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKS 523 Query: 489 KGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKL 391 KGY F+ F++ D A+ N + + R I+L Sbjct: 524 KGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 556
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/58 (34%), Positives = 33/58 (56%) Frame = -2 Query: 564 LSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKL 391 L + FSR+ + VV D+RTG+++G+ FV F D A++ NG + R I++ Sbjct: 133 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRV 190
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 41.6 bits (96), Expect = 0.002 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 LF L + ++ L ++F A++V D+ TG +KG+GFV F++ D AA + M Sbjct: 574 LFVKGLSEDTTEETLKESFD---GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 630 Query: 426 -NGKYVGNR 403 +G+ GN+ Sbjct: 631 EDGEIDGNK 639 Score = 40.4 bits (93), Expect = 0.005 Identities = 32/107 (29%), Positives = 49/107 (45%) Frame = -2 Query: 690 KKKTIPRRAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVR 511 KK+ ++AA ++ + P + LF G+L + L S + N VV Sbjct: 281 KKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVV- 339 Query: 510 DKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKE 370 D R G T+ +G+V F + DL A+ E+ G V IKL K K+ Sbjct: 340 DVRIGMTRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGKD 385 Score = 35.4 bits (80), Expect = 0.17 Identities = 20/93 (21%), Positives = 37/93 (39%) Frame = -2 Query: 669 RAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 490 + Q + + W L +L ++ L + F + V + GK+ Sbjct: 467 KGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKS 522 Query: 489 KGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKL 391 KGY F+ F++ D A+ N + + R I+L Sbjct: 523 KGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 555
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 41.6 bits (96), Expect = 0.002 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 LF L + ++ L ++F A++V D+ TG +KG+GFV F++ D AA + M Sbjct: 576 LFVKGLSEDTTEETLKESFE---GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 632 Query: 426 -NGKYVGNR 403 +G+ GN+ Sbjct: 633 EDGEIDGNK 641 Score = 40.4 bits (93), Expect = 0.005 Identities = 32/113 (28%), Positives = 50/113 (44%) Frame = -2 Query: 690 KKKTIPRRAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVR 511 KK+ ++ A ++ + P + LF G+L + L A S + N V Sbjct: 284 KKEMTKQKEAPEAKKQKIEGSEPTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAAV- 342 Query: 510 DKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEA 352 D RTG + +G+V F + DL A+ E+ G V IKL K ++ V A Sbjct: 343 DVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGRDSKKVRA 394 Score = 32.3 bits (72), Expect = 1.4 Identities = 20/79 (25%), Positives = 34/79 (43%) Frame = -2 Query: 627 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 448 W L +L ++ L + F + KV ++ GK+KGY F+ F++ D Sbjct: 483 WSGESKTLVLSNLSYSATEETLQEVFEKA---TFIKVPQNPH-GKSKGYAFIEFASFEDA 538 Query: 447 AAAIKEMNGKYVGNRPIKL 391 A+ N + R I+L Sbjct: 539 KEALNSCNKMEIEGRTIRL 557
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 41.6 bits (96), Expect = 0.002 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 LF L + ++ L ++F A++V D+ TG +KG+GFV F++ D AA + M Sbjct: 573 LFVKGLSEDTTEETLKESFD---GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 629 Query: 426 -NGKYVGNR 403 +G+ GN+ Sbjct: 630 EDGEIDGNK 638 Score = 40.4 bits (93), Expect = 0.005 Identities = 32/107 (29%), Positives = 49/107 (45%) Frame = -2 Query: 690 KKKTIPRRAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVR 511 KK+ ++AA ++ + P + LF G+L + L S + N VV Sbjct: 280 KKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVV- 338 Query: 510 DKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKE 370 D R G T+ +G+V F + DL A+ E+ G V IKL K K+ Sbjct: 339 DVRIGMTRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGKD 384 Score = 35.4 bits (80), Expect = 0.17 Identities = 20/93 (21%), Positives = 37/93 (39%) Frame = -2 Query: 669 RAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKT 490 + Q + + W L +L ++ L + F + V + GK+ Sbjct: 466 KGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKS 521 Query: 489 KGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKL 391 KGY F+ F++ D A+ N + + R I+L Sbjct: 522 KGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 554
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 41.6 bits (96), Expect = 0.002 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 11/112 (9%) Frame = -2 Query: 693 AKKKTIPRRAAGQSWEDPTLTEWPENDYR-----------LFCGDLGNEVNDDVLSKAFS 547 A++K +P R Q W +W E + L+ +L +++++ K Sbjct: 195 ARRKLLPGRI--QLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEK--- 249 Query: 546 RFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKL 391 FN K +R K + Y FV FSN D A+K +NGK + PI++ Sbjct: 250 ---EFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 298 Score = 38.1 bits (87), Expect = 0.026 Identities = 21/73 (28%), Positives = 35/73 (47%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 PE +F G L ++ +D L + +++ D G +GY FV+FSN + Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVEAK 110 Query: 444 AAIKEMNGKYVGN 406 AIK++N + N Sbjct: 111 NAIKQLNNYEIRN 123
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 41.6 bits (96), Expect = 0.002 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 LF L + ++ L ++F A++V D+ TG +KG+GFV F++ D AA + M Sbjct: 573 LFVKGLSEDTTEETLKESFE---GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 629 Query: 426 -NGKYVGNR 403 +G+ GN+ Sbjct: 630 EDGEIDGNK 638 Score = 37.4 bits (85), Expect = 0.045 Identities = 29/87 (33%), Positives = 41/87 (47%) Frame = -2 Query: 612 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIK 433 + LF G+L + L A S + N VV D RTG + +G+V F + DL A+ Sbjct: 307 FNLFIGNLNPNKSVAELKVAISEPFAKNDLAVV-DVRTGTNRKFGYVDFESAEDLEKAL- 364 Query: 432 EMNGKYVGNRPIKLRKSNWKERTDVEA 352 E+ G V IKL K ++ V A Sbjct: 365 ELTGLKVFGNEIKLEKPKGRDSKKVRA 391 Score = 33.5 bits (75), Expect = 0.65 Identities = 19/79 (24%), Positives = 32/79 (40%) Frame = -2 Query: 627 WPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDL 448 W L +L ++ L + F + V + GK+KGY F+ F++ D Sbjct: 480 WSGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQQGKSKGYAFIEFASFEDA 535 Query: 447 AAAIKEMNGKYVGNRPIKL 391 A+ N + R I+L Sbjct: 536 KEALNSCNKMEIEGRTIRL 554
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/58 (34%), Positives = 33/58 (56%) Frame = -2 Query: 564 LSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKL 391 L + FSR+ + VV D+RTG+++G+ FV F D A++ NG + R I++ Sbjct: 135 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRV 192
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 41.2 bits (95), Expect = 0.003 Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 20/136 (14%) Frame = -2 Query: 657 QSWEDPTLTEWPENDY---------------RLFCGDLGNEVNDDVLSKAFSRFPSFNMA 523 Q+ E+P E P+ D RLF ++ + ++ + FS + Sbjct: 271 QAAEEPAEQEVPQEDEVSAEEAALTKIRATGRLFLRNILYDATEEDFKQLFSPYGELEEV 330 Query: 522 KVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMN-----GKYVGNRPIKLRKSNWKERTDV 358 V D RTG++KG+ +V F +P A A E++ G+ + P +K++ + D+ Sbjct: 331 HVAVDTRTGQSKGFAYVLFKDPEHAANAYIELDKQIFQGRLLHILPADAKKTHRLDEFDL 390 Query: 357 EALQRQKNHIQKKPKT 310 + L +K K+ T Sbjct: 391 KNLPLKKQRELKRKAT 406 Score = 30.0 bits (66), Expect = 7.2 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 5/81 (6%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVR--DKRTGKTK---GYGFVSFSNPTDLAA 442 +F +L L++ F F F +A+V D + K G+GF+ F A Sbjct: 614 IFVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSMGFGFIEFRTKEQAGA 673 Query: 441 AIKEMNGKYVGNRPIKLRKSN 379 I M+G + I+L+ S+ Sbjct: 674 VIAAMDGAVIDGHKIQLKISH 694
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 41.2 bits (95), Expect = 0.003 Identities = 24/71 (33%), Positives = 33/71 (46%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 L+ G L + + L F +F +V R K+TG +KGYGFV F + M Sbjct: 47 LYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAETM 106 Query: 426 NGKYVGNRPIK 394 N +G R IK Sbjct: 107 NNYLMGERIIK 117
>PPIL4_MOUSE (Q9CXG3) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 41.2 bits (95), Expect = 0.003 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 6/90 (6%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 PEN LF L D+ L FSRF +V+RD +TG++ Y F+ F D Sbjct: 238 PENV--LFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCE 295 Query: 444 AAIKEMNGKYVGNRPI------KLRKSNWK 373 A +M+ + +R I + K WK Sbjct: 296 KAFFKMDNVLIDDRRIHVDFSQSVAKVKWK 325
>PPIL4_HUMAN (Q8WUA2) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 41.2 bits (95), Expect = 0.003 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 6/90 (6%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 PEN LF L D+ L FSRF +V+RD +TG++ Y F+ F D Sbjct: 238 PENV--LFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCE 295 Query: 444 AAIKEMNGKYVGNRPI------KLRKSNWK 373 A +M+ + +R I + K WK Sbjct: 296 KAFFKMDNVLIDDRRIHVDFSQSVAKVKWK 325
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 41.2 bits (95), Expect = 0.003 Identities = 18/70 (25%), Positives = 35/70 (50%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 LF + + + L + F + +V +KR+GK +GY F+ + + D+ +A K Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHA 164 Query: 426 NGKYVGNRPI 397 +GK + R + Sbjct: 165 DGKKIDGRRV 174
>RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-binding motif| protein 15B) Length = 563 Score = 41.2 bits (95), Expect = 0.003 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%) Frame = -2 Query: 624 PENDYR----LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNP 457 PE+D R LF G+L + V++ L +AF ++ + R R G+ Y F+ F N Sbjct: 2 PEDDQRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPAR-GQGGAYAFLKFQNL 60 Query: 456 TDLAAAIKEMNGKYVGNRPIKL 391 A M+G+ +G PIK+ Sbjct: 61 DMAHRAKVAMSGRVIGRNPIKI 82
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 41.2 bits (95), Expect = 0.003 Identities = 22/72 (30%), Positives = 37/72 (51%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 PE +LF G L E D+ L F ++ + V+RD T +++G+GFV+++ + Sbjct: 9 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVD 68 Query: 444 AAIKEMNGKYVG 409 AA+ K G Sbjct: 69 AAMNARPHKVDG 80
>RB15B_MOUSE (Q6PHZ5) Putative RNA-binding protein 15B (RNA-binding motif| protein 15B) Length = 564 Score = 41.2 bits (95), Expect = 0.003 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%) Frame = -2 Query: 624 PENDYR----LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNP 457 PE+D R LF G+L + V++ L +AF ++ + R R G+ Y F+ F N Sbjct: 2 PEDDQRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPAR-GQGGAYAFLKFQNL 60 Query: 456 TDLAAAIKEMNGKYVGNRPIKL 391 A M+G+ +G PIK+ Sbjct: 61 DMAHRAKVAMSGRVIGRNPIKI 82
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 40.8 bits (94), Expect = 0.004 Identities = 18/70 (25%), Positives = 34/70 (48%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 LF + + + L + F + +V KR+GK +GY F+ + + D+ +A K Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164 Query: 426 NGKYVGNRPI 397 +GK + R + Sbjct: 165 DGKKIDGRRV 174
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 40.8 bits (94), Expect = 0.004 Identities = 20/78 (25%), Positives = 38/78 (48%) Frame = -2 Query: 594 DLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKY 415 +L + + L + F R+ + RDK + ++KG+GFV F D A+ +GK Sbjct: 25 NLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKL 84 Query: 414 VGNRPIKLRKSNWKERTD 361 V R +++ + + +D Sbjct: 85 VDGRELRVTLAKYDRPSD 102
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 40.8 bits (94), Expect = 0.004 Identities = 18/70 (25%), Positives = 34/70 (48%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 LF + + + L + F + +V KR+GK +GY F+ + + D+ +A K Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164 Query: 426 NGKYVGNRPI 397 +GK + R + Sbjct: 165 DGKKIDGRRV 174
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 40.8 bits (94), Expect = 0.004 Identities = 23/77 (29%), Positives = 43/77 (55%) Frame = -2 Query: 639 TLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 460 ++TE PE+ +LF G L D+ L F ++ + V++D RT +++G+GF+++S+ Sbjct: 23 SITE-PEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSH 81 Query: 459 PTDLAAAIKEMNGKYVG 409 + + A K K G Sbjct: 82 SSMIDEAQKSRPHKIDG 98 Score = 38.5 bits (88), Expect = 0.020 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFS--NPTDLAAAI 436 +LF G L ++ ++ + F F + +V DK TGK +G+ FV F +P D Sbjct: 123 KLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQ 182 Query: 435 K--EMNGKYV 412 K ++NGK V Sbjct: 183 KQHQLNGKMV 192
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 40.4 bits (93), Expect = 0.005 Identities = 19/63 (30%), Positives = 37/63 (58%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 PE +LF G L E D+ L + F ++ + V+RD + +++G+GFV++ + ++ Sbjct: 10 PEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVD 69 Query: 444 AAI 436 AA+ Sbjct: 70 AAM 72
>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 494 Score = 40.4 bits (93), Expect = 0.005 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 5/104 (4%) Frame = -2 Query: 693 AKKKTIPRRAAGQSWEDPTLTEWPENDYR-----LFCGDLGNEVNDDVLSKAFSRFPSFN 529 A+++ R AA Q+ + + P + + LF L D+ L FSRF Sbjct: 221 AERRRREREAAAQALTLEMMGDLPFAEVKPPENVLFVCKLNPVTTDEDLELIFSRFGKIL 280 Query: 528 MAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPI 397 +V+RD++TG + Y F+ F + A +M+ + +R I Sbjct: 281 SCEVIRDQKTGDSLQYAFIEFEDKKSCEEAYSKMDSVLIDDRRI 324
>PPIL4_GIBZE (Q4IE79) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 605 Score = 40.4 bits (93), Expect = 0.005 Identities = 24/76 (31%), Positives = 36/76 (47%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 PEN LF L D+ L F RF +V+RD++TG + Y F+ + + Sbjct: 249 PENV--LFVCKLNPVTGDEDLELIFGRFGKILSCEVIRDQKTGDSLQYAFIEYEDKASCE 306 Query: 444 AAIKEMNGKYVGNRPI 397 AA +M G + +R I Sbjct: 307 AAYFKMQGVLIDDRRI 322
>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 551 Score = 40.4 bits (93), Expect = 0.005 Identities = 26/76 (34%), Positives = 34/76 (44%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 PEN LF L D L FSRF +V++DK+TG + Y F+ F D Sbjct: 260 PENI--LFVCKLNPVTRSDDLELIFSRFGKILSCEVIKDKKTGDSLQYAFIEFDKKDDAE 317 Query: 444 AAIKEMNGKYVGNRPI 397 A +M V +R I Sbjct: 318 RAYFKMQNVLVDDRRI 333
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 40.4 bits (93), Expect = 0.005 Identities = 28/95 (29%), Positives = 49/95 (51%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 R+F G + + + L++ FS + + K++ D R G +KGYGFV+F T+ A + Sbjct: 34 RIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVD-RAGVSKGYGFVTFE--TEQEAQRLQ 90 Query: 429 MNGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQ 325 +G+ V R KL + A+++Q N +Q Sbjct: 91 ADGECVVLRDRKLNIA--------PAIKKQPNPLQ 117
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 40.4 bits (93), Expect = 0.005 Identities = 19/58 (32%), Positives = 32/58 (55%) Frame = -2 Query: 594 DLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNG 421 +L + + L + F F S + + +DK TG++KG+ F+SF D A AI ++G Sbjct: 245 NLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 302
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 40.4 bits (93), Expect = 0.005 Identities = 19/58 (32%), Positives = 32/58 (55%) Frame = -2 Query: 594 DLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNG 421 +L + + L + F F S + + +DK TG++KG+ F+SF D A AI ++G Sbjct: 245 NLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 302
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 40.0 bits (92), Expect = 0.007 Identities = 24/108 (22%), Positives = 49/108 (45%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 RLF ++ +D K FS + V D RTG +KG+ +V F+ P + A E Sbjct: 326 RLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIE 385 Query: 429 MNGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKGILHK 286 ++ + R + + ++ + ++ + ++K+ + +KK K Sbjct: 386 LDKQIFQGRLLHILAADEMKDHRLDEFDLKNMPLKKQRELKKKAAASK 433 Score = 34.7 bits (78), Expect = 0.29 Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 5/110 (4%) Frame = -2 Query: 648 EDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVV-----RDKRTGKTKG 484 ED + + P +F +L + L+ F F F +A+V + K + G Sbjct: 630 EDEQVVDGPT--VSIFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQKNKVLSMG 687 Query: 483 YGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQKN 334 +GFV F A I M+G + I+L+ S+ + + ++ KN Sbjct: 688 FGFVEFRTKEQATAVISAMDGTVIDGHKIQLKLSHRQGNAGSQEKKKAKN 737
>PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (EC 5.2.1.8)| (PPIase cyp6) (Rotamase cyp8) Length = 432 Score = 39.7 bits (91), Expect = 0.009 Identities = 25/76 (32%), Positives = 34/76 (44%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 PEN LF L D+ L FSRF +V+RDK TG + Y F+ F N + Sbjct: 242 PENV--LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVE 299 Query: 444 AAIKEMNGKYVGNRPI 397 A +M + + I Sbjct: 300 KAYFKMQNVLIDDSRI 315
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 39.7 bits (91), Expect = 0.009 Identities = 26/107 (24%), Positives = 46/107 (42%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 LF G L D L + FS+ VV +K + +G+G+V+FS D+ A+KE+ Sbjct: 5 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Query: 426 NGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKGILHK 286 + + K + ++ +K+PK +K + K Sbjct: 65 TTFEGCKIDVTVAKKKLRNKSKETRKNENAESPKKEPKHKKAKVADK 111
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 39.3 bits (90), Expect = 0.012 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 4/82 (4%) Frame = -2 Query: 621 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN--PTDL 448 ++D +LF G L E + L F ++ V D +TG+++G+ F+ F+N D Sbjct: 53 DDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDK 112 Query: 447 AAAIKE--MNGKYVGNRPIKLR 388 +A E +N K V + K R Sbjct: 113 VSAADEHIINSKKVDPKKAKAR 134 Score = 34.7 bits (78), Expect = 0.29 Identities = 16/67 (23%), Positives = 34/67 (50%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 ++F G L E++D+ + F +F + ++ DK+ + KG+ F++F + + +K Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT 196 Query: 429 MNGKYVG 409 K G Sbjct: 197 PKQKIAG 203
>FADJ_YERPS (Q668V1) Fatty acid oxidation complex alpha subunit [Includes:| Enoyl-CoA hydratase (EC 4.2.1.17); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35); 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)] Length = 753 Score = 39.3 bits (90), Expect = 0.012 Identities = 21/65 (32%), Positives = 34/65 (52%) Frame = -2 Query: 564 LSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKLRK 385 L F+ PSF++ +++D R G+ G GF +SNPT + + K + GN P K Sbjct: 562 LGPRFAAPPSFDV--ILKDGRKGRKNGRGFYLYSNPTLHSNSTKNSSPTKNGNSPAKRNS 619 Query: 384 SNWKE 370 W++ Sbjct: 620 FKWRK 624
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 39.3 bits (90), Expect = 0.012 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 2/68 (2%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFS--NPTDLAAAI 436 +LF G L + +++ L + F +F + K++ DK TGK +G+ FV F + D A Sbjct: 124 KLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILK 183 Query: 435 KEMNGKYV 412 K+ KYV Sbjct: 184 KQHAIKYV 191
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 38.9 bits (89), Expect = 0.015 Identities = 14/50 (28%), Positives = 30/50 (60%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 460 +LF G + + + L + F + +++ DK++GK +G+GFV+F++ Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFND 150 Score = 36.2 bits (82), Expect = 0.10 Identities = 17/58 (29%), Positives = 33/58 (56%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI 436 +LF G L E ++ L + ++ V+RD + +++G+GFV+FS ++ AA+ Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAM 67
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 38.9 bits (89), Expect = 0.015 Identities = 23/104 (22%), Positives = 52/104 (50%), Gaps = 2/104 (1%) Frame = -2 Query: 612 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIK 433 +RL ++ + D+ + F F + RD + ++KG+G++ + NP A++ Sbjct: 340 HRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQN-RSKGFGYIQYRNPISARNALE 398 Query: 432 EMNGKYVGNRPIKLRKSNWKERTDVEA--LQRQKNHIQKKPKTQ 307 +MNG + R +++ N K T+ + L+R + ++ ++Q Sbjct: 399 KMNGFDLAGRNMRVCLGNDKFTTETTSSMLKRFDETLARQERSQ 442 Score = 37.0 bits (84), Expect = 0.059 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Frame = -2 Query: 621 ENDYR-LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 E D R +F L N + L F + A++VRDK +G++KG +V F + + Sbjct: 236 ERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQ 295 Query: 444 AAIKEMNGKYVGNRPI 397 AAI ++GK + P+ Sbjct: 296 AAI-ALSGKRLLGLPV 310
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 38.9 bits (89), Expect = 0.015 Identities = 22/91 (24%), Positives = 40/91 (43%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F G++ +V + + F ++ D+ TG KGYG++ F +P A++ Sbjct: 66 IFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLN 125 Query: 426 NGKYVGNRPIKLRKSNWKERTDVEALQRQKN 334 G+ G + RK RT++ R N Sbjct: 126 GGELKGKKIAVSRK-----RTNIPGFNRHYN 151
>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34) Length = 293 Score = 38.9 bits (89), Expect = 0.015 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 8/82 (9%) Frame = -2 Query: 591 LGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYV 412 L N +++ + FS+F + ++ R KRTG +KGY FV F + + MN Sbjct: 52 LPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNNYLF 111 Query: 411 GNR--------PIKLRKSNWKE 370 G R P K+ K +K+ Sbjct: 112 GERLLECHFMPPEKVHKELFKD 133
>NOP12_YARLI (Q6C2Q7) Nucleolar protein 12| Length = 509 Score = 38.9 bits (89), Expect = 0.015 Identities = 27/98 (27%), Positives = 48/98 (48%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F G L E ++ L +AFS ++VRD +T KG+ +V F + + A+ + Sbjct: 276 VFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGFAYVQFKDVNSVEQALL-L 334 Query: 426 NGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPK 313 NGK + +L KS +R + + + H Q++ K Sbjct: 335 NGKGIN----ELSKSTTNKR-KLRVSRAKSQHSQERAK 367
>NOP12_CANGA (Q6FUS6) Nucleolar protein 12| Length = 396 Score = 38.9 bits (89), Expect = 0.015 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 7/114 (6%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI--- 436 +F G+L E +++ L K F S ++VRD +T KG+ +V F+ ++ A+ Sbjct: 230 VFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQFNELQSVSKALLLN 289 Query: 435 -KEMNGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKT---QKKGILHK 286 K M + + KLR + K VE + ++ KT + K IL+K Sbjct: 290 EKPMISQNEHLKKRKLRVTRCKNIRKVEPTLKSGKYMTDGQKTKLGRAKKILNK 343
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 38.5 bits (88), Expect = 0.020 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFS--NPTDLAAAI 436 +LF G L ++ +++ L + F F +V DK TGK +G+ F+ F +P D Sbjct: 116 KLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQ 175 Query: 435 KEMNGKYVGNRPIKLRKSNWKERTD 361 K + + N+ + ++K+ K+ D Sbjct: 176 KTHS---IKNKTLDVKKAIAKQDMD 197 Score = 38.1 bits (87), Expect = 0.026 Identities = 17/54 (31%), Positives = 31/54 (57%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFS 463 PE +LF G L DD L F ++ + V++D +T +++G+GF+++S Sbjct: 20 PEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYS 73
>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)| Length = 289 Score = 38.5 bits (88), Expect = 0.020 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 3/79 (3%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIK-- 433 +F G + +N+ + F ++ + K++ D RTG +KGYGFVSF + D+ ++ Sbjct: 38 VFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITD-RTGVSKGYGFVSFLDNVDVQKIVESQ 96 Query: 432 -EMNGKYVGNRPIKLRKSN 379 ++GK + P ++ N Sbjct: 97 ISVHGKRLKLGPAIRKQQN 115
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 38.5 bits (88), Expect = 0.020 Identities = 22/81 (27%), Positives = 42/81 (51%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 ++F G+L ++ + + F ++ + +VR+ YGFV D+ AIKE Sbjct: 87 KIFVGNLTDKTRAPEVRELFQKYGTVVECDIVRN--------YGFVHLDCVGDVQDAIKE 138 Query: 429 MNGKYVGNRPIKLRKSNWKER 367 +NG+ V +P+K++ S + R Sbjct: 139 LNGRVVDGQPLKVQVSTSRVR 159
>NOP12_ASHGO (Q75BJ7) Nucleolar protein 12| Length = 426 Score = 38.1 bits (87), Expect = 0.026 Identities = 24/91 (26%), Positives = 46/91 (50%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEM 427 +F G+L E +++ L K F ++VRD +T KG+ +V F++ + A+ Sbjct: 261 VFVGNLDFEESEESLWKHFMSCGPIEYVRIVRDPKTNVGKGFAYVQFADLVSVNKALLLN 320 Query: 426 NGKYVGNRPIKLRKSNWKERTDVEALQRQKN 334 + K + KLR + + +++ +QRQ N Sbjct: 321 DKKMAVGKGRKLRVTRCR---NMQKVQRQSN 348
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 38.1 bits (87), Expect = 0.026 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 3/79 (3%) Frame = -2 Query: 615 DYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI 436 +++LF G L + + + + F +F ++RD+ +++G GFV +S+ AAI Sbjct: 210 EFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAI 268 Query: 435 KEMNGKYV---GNRPIKLR 388 +NG Y N+P+ +R Sbjct: 269 DGLNGTYTMRGCNQPLIVR 287 Score = 35.8 bits (81), Expect = 0.13 Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 3/77 (3%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 +LF G + ++ + F + + +++DKRTG+ +G FV ++ D AI+ Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180 Query: 429 MNGKYV---GNRPIKLR 388 ++ + G P+++R Sbjct: 181 LHNQITLPGGTGPVQVR 197
>PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 504 Score = 37.7 bits (86), Expect = 0.034 Identities = 26/76 (34%), Positives = 34/76 (44%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 PEN LF L D+ L FSRF +VVRDK++G + Y F+ F Sbjct: 244 PENI--LFVCKLNPVTQDEDLELIFSRFGKILSCEVVRDKKSGDSLQYAFIEFDEREAAE 301 Query: 444 AAIKEMNGKYVGNRPI 397 A +M V +R I Sbjct: 302 QAYFKMQNVLVDDRRI 317
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 37.7 bits (86), Expect = 0.034 Identities = 16/54 (29%), Positives = 32/54 (59%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFS 463 PE+ +LF G L D+ L + F ++ V++D +T +++G+GF+++S Sbjct: 13 PEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYS 66
>FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)| Length = 512 Score = 37.7 bits (86), Expect = 0.034 Identities = 19/46 (41%), Positives = 24/46 (52%) Frame = -2 Query: 528 MAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKL 391 M + D+ TGK KG VSF +P AAI +GK PIK+ Sbjct: 307 MINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKV 352
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 37.7 bits (86), Expect = 0.034 Identities = 17/58 (29%), Positives = 34/58 (58%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI 436 +LF G L E ++ L + ++ V+RD + +++G+GFV+FS+ ++ AA+ Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 67 Score = 37.0 bits (84), Expect = 0.059 Identities = 17/76 (22%), Positives = 38/76 (50%) Frame = -2 Query: 687 KKTIPRRAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD 508 K+ + R +G+ T+ +LF G + + + L F + + +++ D Sbjct: 82 KRAVAREESGKPGAHVTVK-------KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITD 134 Query: 507 KRTGKTKGYGFVSFSN 460 +++GK +G+GFV+F + Sbjct: 135 RQSGKKRGFGFVTFDD 150
>FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS)| (Translocated in liposarcoma protein) (POMp75) (75 kDa DNA-pairing protein) Length = 526 Score = 37.7 bits (86), Expect = 0.034 Identities = 19/46 (41%), Positives = 24/46 (52%) Frame = -2 Query: 528 MAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKL 391 M + D+ TGK KG VSF +P AAI +GK PIK+ Sbjct: 321 MINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKV 366
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 37.7 bits (86), Expect = 0.034 Identities = 17/58 (29%), Positives = 34/58 (58%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAI 436 +LF G L E ++ L + ++ V+RD + +++G+GFV+FS+ ++ AA+ Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 79 Score = 37.0 bits (84), Expect = 0.059 Identities = 17/76 (22%), Positives = 38/76 (50%) Frame = -2 Query: 687 KKTIPRRAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD 508 K+ + R +G+ T+ +LF G + + + L F + + +++ D Sbjct: 94 KRAVAREESGKPGAHVTVK-------KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITD 146 Query: 507 KRTGKTKGYGFVSFSN 460 +++GK +G+GFV+F + Sbjct: 147 RQSGKKRGFGFVTFDD 162
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 37.7 bits (86), Expect = 0.034 Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 2/118 (1%) Frame = -2 Query: 648 EDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVS 469 EDPT+ + RLF +L ++ + FS++ + + +TG+ KG+ V Sbjct: 290 EDPTIVSIRKTG-RLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQ 348 Query: 468 FSNPTDLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQ--KNHIQKKPKTQKK 301 F +P + AA + +GK R + + K + D L KN KK + K+ Sbjct: 349 FEDPENAIAAYEAQDGKIFQGRLLHILPG--KPKKDYNRLDEHDLKNLPLKKQQELKR 404 Score = 34.7 bits (78), Expect = 0.29 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 5/81 (6%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVR---DKRTGK--TKGYGFVSFSNPTDLAA 442 +F +L + VL+ AF F +A+V K GK + G+GFV FS+ Sbjct: 607 VFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFSSKEAAEI 666 Query: 441 AIKEMNGKYVGNRPIKLRKSN 379 A K M+G + ++L+ SN Sbjct: 667 AQKAMDGHVLDGHKLQLKISN 687 Score = 30.8 bits (68), Expect = 4.2 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = -2 Query: 522 KVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKL 391 KVVR R GKT+ +GFV F + AA+K + ++ + I + Sbjct: 42 KVVR-ARDGKTRRFGFVGFRSDETAEAAVKYFDTSFINSTKISV 84
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 37.7 bits (86), Expect = 0.034 Identities = 25/106 (23%), Positives = 49/106 (46%) Frame = -2 Query: 633 TEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPT 454 TE RL ++ D L + F +F +++ ++R +KG+GFV+F N Sbjct: 109 TESKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSA 166 Query: 453 DLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKP 316 D A ++++G V R I++ + + T+ + + N + P Sbjct: 167 DADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNP 212
>FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)| Length = 518 Score = 37.7 bits (86), Expect = 0.034 Identities = 19/46 (41%), Positives = 24/46 (52%) Frame = -2 Query: 528 MAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKYVGNRPIKL 391 M + D+ TGK KG VSF +P AAI +GK PIK+ Sbjct: 314 MINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKV 359
>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)| (Transcriptional coactivator Aly/REF) (bZIP-enhancing factor BEF) Length = 256 Score = 37.4 bits (85), Expect = 0.045 Identities = 26/108 (24%), Positives = 50/108 (46%) Frame = -2 Query: 621 ENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAA 442 E +L +L V+D + + F+ F + A V D R+G++ G V F D Sbjct: 102 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYD-RSGRSLGTADVHFERKADALK 160 Query: 441 AIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKG 298 A+K+ NG + RP+ ++ + ++A +R + + T+ +G Sbjct: 161 AMKQYNGVPLDGRPMNIQLVT----SQIDAQRRPAQSVNRGGMTRNRG 204
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 37.4 bits (85), Expect = 0.045 Identities = 20/99 (20%), Positives = 46/99 (46%) Frame = -2 Query: 594 DLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKY 415 +L + D L + F ++ + RD+ T +++G+ FV F + D A+ M+G Sbjct: 20 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV 79 Query: 414 VGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKG 298 + R ++++ + + D +H ++ P ++ G Sbjct: 80 LDGRELRVQMARYGRPPD-------SHHSRRGPPPRRYG 111
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 37.4 bits (85), Expect = 0.045 Identities = 20/99 (20%), Positives = 46/99 (46%) Frame = -2 Query: 594 DLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKY 415 +L + D L + F ++ + RD+ T +++G+ FV F + D A+ M+G Sbjct: 19 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV 78 Query: 414 VGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKG 298 + R ++++ + + D +H ++ P ++ G Sbjct: 79 LDGRELRVQMARYGRPPD-------SHHSRRGPPPRRYG 110
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 37.4 bits (85), Expect = 0.045 Identities = 20/99 (20%), Positives = 46/99 (46%) Frame = -2 Query: 594 DLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKY 415 +L + D L + F ++ + RD+ T +++G+ FV F + D A+ M+G Sbjct: 19 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV 78 Query: 414 VGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKG 298 + R ++++ + + D +H ++ P ++ G Sbjct: 79 LDGRELRVQMARYGRPPD-------SHHSRRGPPPRRYG 110
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 37.4 bits (85), Expect = 0.045 Identities = 20/99 (20%), Positives = 46/99 (46%) Frame = -2 Query: 594 DLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKY 415 +L + D L + F ++ + RD+ T +++G+ FV F + D A+ M+G Sbjct: 19 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV 78 Query: 414 VGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKG 298 + R ++++ + + D +H ++ P ++ G Sbjct: 79 LDGRELRVQMARYGRPPD-------SHHSRRGPPPRRYG 110
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 37.4 bits (85), Expect = 0.045 Identities = 20/99 (20%), Positives = 46/99 (46%) Frame = -2 Query: 594 DLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKEMNGKY 415 +L + D L + F ++ + RD+ T +++G+ FV F + D A+ M+G Sbjct: 19 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV 78 Query: 414 VGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQKKG 298 + R ++++ + + D +H ++ P ++ G Sbjct: 79 LDGRELRVQMARYGRPPD-------SHHSRRGPPPRRYG 110
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 37.4 bits (85), Expect = 0.045 Identities = 25/106 (23%), Positives = 49/106 (46%) Frame = -2 Query: 633 TEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPT 454 TE RL ++ D L + F +F +++ ++R +KG+GFV+F N Sbjct: 110 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSA 167 Query: 453 DLAAAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKP 316 D A ++++G V R I++ + + T+ + + N + P Sbjct: 168 DADRAREKLHGTVVEGRKIEVNNATARVMTNKKTVNPYTNGWKLNP 213
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 37.0 bits (84), Expect = 0.059 Identities = 30/103 (29%), Positives = 41/103 (39%) Frame = -2 Query: 624 PENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLA 445 P N +++F G++ L F R VV+D Y FV D Sbjct: 75 PLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAK 126 Query: 444 AAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKP 316 AAI ++NGK V + I + S K + AL Q KKP Sbjct: 127 AAIAQLNGKEVKGKRINVELST-KGQKKGPALAIQSGDKTKKP 168
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 37.0 bits (84), Expect = 0.059 Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 5/105 (4%) Frame = -2 Query: 609 RLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFVSFSNPTDLAAAIKE 430 RLF +L +D L F F + DK+T KG+ ++ F + D A E Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383 Query: 429 MNGKYVGNR-----PIKLRKSNWKERTDVEALQRQKNHIQKKPKT 310 ++ K R P K R S + + L +K K+ T Sbjct: 384 LDAKPFQGRLLHVLPAKARSSILLDDYALSKLPLKKQRELKRKNT 428 Score = 33.1 bits (74), Expect = 0.85 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 6/107 (5%) Frame = -2 Query: 606 LFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVR----DKRTGK--TKGYGFVSFSNPTDLA 445 ++ +L + K F + ++ V+R KR GK + G+GFV F + Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGY-LSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAV 679 Query: 444 AAIKEMNGKYVGNRPIKLRKSNWKERTDVEALQRQKNHIQKKPKTQK 304 AA+ MNG + ++++ S+ V+A + KPK K Sbjct: 680 AAMHAMNGFVLDGHKLEIKLSH----QGVDAAAEVRKQDSSKPKGTK 722 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,892,951 Number of Sequences: 219361 Number of extensions: 1822215 Number of successful extensions: 5497 Number of sequences better than 10.0: 349 Number of HSP's better than 10.0 without gapping: 5122 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5474 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7082949625 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
