ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags9f20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483857.1| Oryza sativa (japonica cultivar-group), mRNA 424 e-115
2dbj|AK061692.1| Oryza sativa (japonica cultivar-group) cDNA clon... 424 e-115
3dbj|AK067161.1| Oryza sativa (japonica cultivar-group) cDNA clon... 416 e-113
4gb|AY109581.1| Zea mays CL32255_1 mRNA sequence 168 2e-38
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
6dbj|AP005411.3| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
7dbj|AP006848.1| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
8ref|NM_111321.2| Arabidopsis thaliana RNA binding / nucleic acid... 115 2e-22
9gb|BT005571.1| Arabidopsis thaliana clone U50875 putative RRM-co... 115 2e-22
10dbj|AK118315.1| Arabidopsis thaliana At3g04500 mRNA for unknown ... 115 2e-22
11gb|BT012859.1| Lycopersicon esculentum clone 113947R, mRNA sequence 78 4e-11
12emb|BX824315.1|CNS0A7R6 Arabidopsis thaliana Full-length cDNA Co... 72 3e-09
13gb|AC022287.9|ATAC022287 Arabidopsis thaliana chromosome III BAC... 52 0.003
14ref|XM_636963.1| Dictyostelium discoideum ssRNA-binding protein ... 48 0.040
15emb|Y07952.1|DDSSDBP D.discoideum mRNA for ssRNA-binding protein 48 0.040
16gb|AC024610.6| Homo sapiens chromosome 17, clone RP11-17M24, com... 48 0.040
17gb|AC078907.7| Homo sapiens chromosome 17, clone RP11-160L11, co... 48 0.040
18dbj|AK115225.1| Ciona intestinalis cDNA, clone:cieg040e13, full ... 44 0.62
19emb|AL845280.4| Mouse DNA sequence from clone RP23-265L1 on chro... 44 0.62
20gb|AC135288.1| Solanum demissum chromosome 5 BAC PGEC219 genomic... 42 2.4
21gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 2.4
22ref|XM_668220.1| Plasmodium berghei strain ANKA hypothetical pro... 42 2.4
23ref|XM_673175.1| Plasmodium berghei strain ANKA glycerol-3-phosp... 42 2.4
24gb|AC155648.14| Mus musculus 6 BAC RP24-88B16 (Roswell Park Canc... 42 2.4
25gb|AC087534.8| Homo sapiens chromosome 18, clone RP11-716B20, co... 42 2.4
26gb|AC007638.8| Homo sapiens chromosome 17, clone RP11-515O17, co... 42 2.4
27gb|AC128645.5| Oryza sativa chromosome 3 BAC OSJNBb0016P23 genom... 42 2.4
28dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
29gb|AC009891.2|AC009891 Genomic Sequence for Homo sapiens clone H... 42 2.4
30emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 42 2.4
31emb|AL845366.6| Zebrafish DNA sequence from clone CH211-167C22 i... 42 2.4
32gb|AC166288.7| Mus musculus chromosome 3, clone RP23-464M10, com... 40 9.7
33gb|AC150387.2| Branchiostoma floridae clone CH302-103N24, comple... 40 9.7
34gb|AC166646.4| Mus musculus chromosome 3, clone RP24-400P18, com... 40 9.7
35gb|AE001392.2| Plasmodium falciparum 3D7 chromosome 2 section 29... 40 9.7
36gb|AC104705.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.7
37gb|AC158936.4| Mus musculus chromosome 3, clone RP23-235P13, com... 40 9.7
38gb|AY810567.1| Schistosoma japonicum SJCHGC03253 protein mRNA, p... 40 9.7
39gb|AC130599.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.7
40gb|AC127308.3| Mus musculus BAC clone RP23-293B20 from 8, comple... 40 9.7
41emb|CR847832.18| Zebrafish DNA sequence from clone DKEY-30K23 in... 40 9.7
42gb|AC121986.2| Mus musculus BAC clone RP24-293I7 from 10, comple... 40 9.7
43gb|AC006151.4| Homo sapiens BAC clone GS1-286B23 from 7, complet... 40 9.7
44gb|AC104884.10| Mus musculus chromosome 3, clone RP24-281E9, com... 40 9.7
45emb|AL592430.8| Human DNA sequence from clone RP11-388P9 on chro... 40 9.7
46emb|AL356321.9| Human DNA sequence from clone RP11-282M24 on chr... 40 9.7
47emb|AL354777.16| Human DNA sequence from clone RP11-33K8 on chro... 40 9.7
48gb|AC092898.15| Homo sapiens 3 BAC RP11-321A2 (Roswell Park Canc... 40 9.7
49gb|AC153566.12| Mus musculus 10 BAC RP23-5H4 (Roswell Park Cance... 40 9.7
50gb|AC105001.3| Homo sapiens chromosome 8, clone CTD-2135J3, comp... 40 9.7
51gb|AC093797.3| Homo sapiens BAC clone RP11-301L8 from 4, complet... 40 9.7
52gb|AC011008.10| Homo sapiens chromosome 8, clone RP11-177H2, com... 40 9.7
53gb|AC151598.2| Medicago truncatula chromosome 2 BAC clone mte1-4... 40 9.7
54dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.7
55dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.7
56dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 40 9.7
57dbj|AP004151.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.7
58emb|AJ242744.1|KAE242744 Klebsiella aerogenes partial phnJ gene ... 40 9.7
59ref|XM_312879.2| Anopheles gambiae str. PEST ENSANGP00000014812 ... 40 9.7
60emb|AL954843.8| Zebrafish DNA sequence from clone DKEY-149K8 in ... 40 9.7
61gb|U22412.1|CFU22412 Canis familiaris beta-A3/A1 crystalline gen... 40 9.7 
>ref|XM_483857.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1163

 Score =  424 bits (214), Expect = e-115
 Identities = 378/433 (87%)
 Strand = Plus / Minus

                                                                       
Query: 274 aatagagctttacttgtgaagaatacccttcttttgtgttttaggtttcttctgaatatg 333
           |||| |||||||||||||||| ||||  |||||  |  |||||||||||||||| || ||
Sbjct: 791 aatatagctttacttgtgaaggatacttttcttgggcattttaggtttcttctggatgtg 732

                                                                       
Query: 334 attcttttgtctttgtagagcctcgacatctgtcctctccttccaattgctcttacgcaa 393
           |||||| ||||||| |||||| || ||||| |||||||| ||||||||||| ||||||||
Sbjct: 731 attcttctgtctttctagagcatcaacatcggtcctctctttccaattgcttttacgcaa 672

                                                                       
Query: 394 tttaatagggcgattcccaacatactttccattcatttcttttattgctgcagcgaggtc 453
           |||||||||||| |||||||||||||| |||||||||||||| |||||| |||| |||||
Sbjct: 671 tttaatagggcggttcccaacatacttcccattcatttctttaattgctccagcaaggtc 612

                                                                       
Query: 454 tgtagggtttgaaaaactgacgaatccataaccttttgttttgccagtcctcttatctct 513
            |||||||||||||| || || |||||||| ||||||||||||||||| |||||||||| 
Sbjct: 611 agtagggtttgaaaagctcacaaatccatatccttttgttttgccagttctcttatctcg 552

                                                                       
Query: 514 aacaacctttgccatattgaaggaggggaaccgtgaaaaggcttttgagagaacatcgtc 573
           ||||||| ||||||| ||||||||||||||||||||||| ||||||||||| || |||||
Sbjct: 551 aacaacccttgccatgttgaaggaggggaaccgtgaaaaagcttttgagaggacgtcgtc 492

                                                                       
Query: 574 attaacttcgttacctagatctccgcaaaacaacctgtagtcattctcgggccactcggt 633
           ||| ||||| || || |||||||| ||||| || |  |||||||| |||||||| |||||
Sbjct: 491 attgacttcattgcccagatctccacaaaataagcgatagtcattgtcgggccagtcggt 432

                                                                       
Query: 634 gagggtgggatcctcccangactgtccggctgctcgacgagggattgtcttcttcttggc 693
           |||||||||||||||||| || || ||||| || || || ||||| |  |||||||||||
Sbjct: 431 gagggtgggatcctcccaggattggccggcggcgcggcgggggatggctttcttcttggc 372

                        
Query: 694 ggcagggtcggag 706
           |||||||||||||
Sbjct: 371 ggcagggtcggag 359
to top
>dbj|AK061692.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-C04, full
           insert sequence
          Length = 1163

 Score =  424 bits (214), Expect = e-115
 Identities = 378/433 (87%)
 Strand = Plus / Minus

                                                                       
Query: 274 aatagagctttacttgtgaagaatacccttcttttgtgttttaggtttcttctgaatatg 333
           |||| |||||||||||||||| ||||  |||||  |  |||||||||||||||| || ||
Sbjct: 791 aatatagctttacttgtgaaggatacttttcttgggcattttaggtttcttctggatgtg 732

                                                                       
Query: 334 attcttttgtctttgtagagcctcgacatctgtcctctccttccaattgctcttacgcaa 393
           |||||| ||||||| |||||| || ||||| |||||||| ||||||||||| ||||||||
Sbjct: 731 attcttctgtctttctagagcatcaacatcggtcctctctttccaattgcttttacgcaa 672

                                                                       
Query: 394 tttaatagggcgattcccaacatactttccattcatttcttttattgctgcagcgaggtc 453
           |||||||||||| |||||||||||||| |||||||||||||| |||||| |||| |||||
Sbjct: 671 tttaatagggcggttcccaacatacttcccattcatttctttaattgctccagcaaggtc 612

                                                                       
Query: 454 tgtagggtttgaaaaactgacgaatccataaccttttgttttgccagtcctcttatctct 513
            |||||||||||||| || || |||||||| ||||||||||||||||| |||||||||| 
Sbjct: 611 agtagggtttgaaaagctcacaaatccatatccttttgttttgccagttctcttatctcg 552

                                                                       
Query: 514 aacaacctttgccatattgaaggaggggaaccgtgaaaaggcttttgagagaacatcgtc 573
           ||||||| ||||||| ||||||||||||||||||||||| ||||||||||| || |||||
Sbjct: 551 aacaacccttgccatgttgaaggaggggaaccgtgaaaaagcttttgagaggacgtcgtc 492

                                                                       
Query: 574 attaacttcgttacctagatctccgcaaaacaacctgtagtcattctcgggccactcggt 633
           ||| ||||| || || |||||||| ||||| || |  |||||||| |||||||| |||||
Sbjct: 491 attgacttcattgcccagatctccacaaaataagcgatagtcattgtcgggccagtcggt 432

                                                                       
Query: 634 gagggtgggatcctcccangactgtccggctgctcgacgagggattgtcttcttcttggc 693
           |||||||||||||||||| || || ||||| || || || ||||| |  |||||||||||
Sbjct: 431 gagggtgggatcctcccaggattggccggcggcgcggcgggggatggctttcttcttggc 372

                        
Query: 694 ggcagggtcggag 706
           |||||||||||||
Sbjct: 371 ggcagggtcggag 359
to top
>dbj|AK067161.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094H15, full
           insert sequence
          Length = 1018

 Score =  416 bits (210), Expect = e-113
 Identities = 377/433 (87%)
 Strand = Plus / Minus

                                                                       
Query: 274 aatagagctttacttgtgaagaatacccttcttttgtgttttaggtttcttctgaatatg 333
           |||| |||||||||||||||| ||||  |||||  |  |||||||||||||||| || ||
Sbjct: 648 aatatagctttacttgtgaaggatacttttcttgggcattttaggtttcttctggatgtg 589

                                                                       
Query: 334 attcttttgtctttgtagagcctcgacatctgtcctctccttccaattgctcttacgcaa 393
           ||| || ||||||| |||||| || ||||| |||||||| ||||||||||| ||||||||
Sbjct: 588 atttttctgtctttctagagcatcaacatcggtcctctctttccaattgcttttacgcaa 529

                                                                       
Query: 394 tttaatagggcgattcccaacatactttccattcatttcttttattgctgcagcgaggtc 453
           |||||||||||| |||||||||||||| |||||||||||||| |||||| |||| |||||
Sbjct: 528 tttaatagggcggttcccaacatacttcccattcatttctttaattgctccagcaaggtc 469

                                                                       
Query: 454 tgtagggtttgaaaaactgacgaatccataaccttttgttttgccagtcctcttatctct 513
            |||||||||||||| || || |||||||| ||||||||||||||||| |||||||||| 
Sbjct: 468 agtagggtttgaaaagctcacaaatccatatccttttgttttgccagttctcttatctcg 409

                                                                       
Query: 514 aacaacctttgccatattgaaggaggggaaccgtgaaaaggcttttgagagaacatcgtc 573
           ||||||| ||||||| ||||||||||||||||||||||| ||||||||||| || |||||
Sbjct: 408 aacaacccttgccatgttgaaggaggggaaccgtgaaaaagcttttgagaggacgtcgtc 349

                                                                       
Query: 574 attaacttcgttacctagatctccgcaaaacaacctgtagtcattctcgggccactcggt 633
           ||| ||||| || || |||||||| ||||| || |  |||||||| |||||||| |||||
Sbjct: 348 attgacttcattgcccagatctccacaaaataagcgatagtcattgtcgggccagtcggt 289

                                                                       
Query: 634 gagggtgggatcctcccangactgtccggctgctcgacgagggattgtcttcttcttggc 693
           |||||||||||||||||| || || ||||| || || || ||||| |  |||||||||||
Sbjct: 288 gagggtgggatcctcccaggattggccggcggcgcggcgggggatggctttcttcttggc 229

                        
Query: 694 ggcagggtcggag 706
           |||||||||||||
Sbjct: 228 ggcagggtcggag 216
to top
>gb|AY109581.1| Zea mays CL32255_1 mRNA sequence
          Length = 1255

 Score =  168 bits (85), Expect = 2e-38
 Identities = 139/157 (88%)
 Strand = Plus / Plus

                                                                       
Query: 441 ctgcagcgaggtctgtagggtttgaaaaactgacgaatccataaccttttgttttgccag 500
           ||||||| | ||| |||||||||||||| || || |||||||||||||| || |||||||
Sbjct: 584 ctgcagccaagtcagtagggtttgaaaagctcacaaatccataacctttagtcttgccag 643

                                                                       
Query: 501 tcctcttatctctaacaacctttgccatattgaaggaggggaaccgtgaaaaggcttttg 560
           |||||||||||||||||||| ||||||| |||||||| || |||||||| || ||||| |
Sbjct: 644 tcctcttatctctaacaacccttgccatgttgaaggatggaaaccgtgagaatgctttgg 703

                                                
Query: 561 agagaacatcgtcattaacttcgttacctagatctcc 597
           | |||||||| |||||||||||||| |||||||||||
Sbjct: 704 atagaacatcatcattaacttcgttgcctagatctcc 740



 Score =  141 bits (71), Expect = 4e-30
 Identities = 116/131 (88%)
 Strand = Plus / Plus

                                                                       
Query: 284 tacttgtgaagaatacccttcttttgtgttttaggtttcttctgaatatgattcttttgt 343
           ||||||||||||| || ||||||  |  ||||||| ||| | || | |||||||||||||
Sbjct: 427 tacttgtgaagaacactcttcttgggaattttaggcttcctttggacatgattcttttgt 486

                                                                       
Query: 344 ctttgtagagcctcgacatctgtcctctccttccaattgctcttacgcaatttaataggg 403
           ||||| |||||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 487 ctttgcagagcctcaacatctgtcctctccttccagttactcttacgcaatttaataggg 546

                      
Query: 404 cgattcccaac 414
           |||||||||||
Sbjct: 547 cgattcccaac 557
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  119 bits (60), Expect = 1e-23
 Identities = 90/100 (90%)
 Strand = Plus / Plus

                                                                            
Query: 422      ccattcatttcttttattgctgcagcgaggtctgtagggtttgaaaaactgacgaatcca 481
                |||||||||||||| |||||| |||| ||||| |||||||||||||| || || ||||||
Sbjct: 28400361 ccattcatttctttaattgctccagcaaggtcagtagggtttgaaaagctcacaaatcca 28400420

                                                        
Query: 482      taaccttttgttttgccagtcctcttatctctaacaacct 521
                || ||||||||||||||||| |||||||||| ||||||||
Sbjct: 28400421 tatccttttgttttgccagttctcttatctcgaacaacct 28400460



 Score =  103 bits (52), Expect = 8e-19
 Identities = 73/80 (91%)
 Strand = Plus / Plus

                                                                            
Query: 341      tgtctttgtagagcctcgacatctgtcctctccttccaattgctcttacgcaatttaata 400
                ||||||| |||||| || ||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 28400194 tgtctttctagagcatcaacatcggtcctctctttccaattgcttttacgcaatttaata 28400253

                                    
Query: 401      gggcgattcccaacatactt 420
                ||||| ||||||||||||||
Sbjct: 28400254 gggcggttcccaacatactt 28400273



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 73/82 (89%)
 Strand = Plus / Plus

                                                                            
Query: 522      ttgccatattgaaggaggggaaccgtgaaaaggcttttgagagaacatcgtcattaactt 581
                ||||||| ||||||||||||||||||||||| ||||||||||| || |||||||| ||||
Sbjct: 28401047 ttgccatgttgaaggaggggaaccgtgaaaaagcttttgagaggacgtcgtcattgactt 28401106

                                      
Query: 582      cgttacctagatctccgcaaaa 603
                | || || |||||||| |||||
Sbjct: 28401107 cattgcccagatctccacaaaa 28401128



 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 76/87 (87%)
 Strand = Plus / Plus

                                                                            
Query: 620      tcgggccactcggtgagggtgggatcctcccangactgtccggctgctcgacgagggatt 679
                |||||||| ||||||||||||||||||||||| || || ||||| || || || ||||| 
Sbjct: 28401227 tcgggccagtcggtgagggtgggatcctcccaggattggccggcggcgcggcgggggatg 28401286

                                           
Query: 680      gtcttcttcttggcggcagggtcggag 706
                |  ||||||||||||||||||||||||
Sbjct: 28401287 gctttcttcttggcggcagggtcggag 28401313



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                            
Query: 274      aatagagctttacttgtgaagaatacccttcttttgtgttttaggtttcttctgaatatg 333
                |||| |||||||||||||||| ||||  |||||  |  |||||||||||||||| || ||
Sbjct: 28400047 aatatagctttacttgtgaaggatacttttcttgggcattttaggtttcttctggatgtg 28400106

                     
Query: 334      attct 338
                |||||
Sbjct: 28400107 attct 28400111
to top
>dbj|AP005411.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0044E16
          Length = 153296

 Score =  119 bits (60), Expect = 1e-23
 Identities = 90/100 (90%)
 Strand = Plus / Plus

                                                                          
Query: 422    ccattcatttcttttattgctgcagcgaggtctgtagggtttgaaaaactgacgaatcca 481
              |||||||||||||| |||||| |||| ||||| |||||||||||||| || || ||||||
Sbjct: 129167 ccattcatttctttaattgctccagcaaggtcagtagggtttgaaaagctcacaaatcca 129226

                                                      
Query: 482    taaccttttgttttgccagtcctcttatctctaacaacct 521
              || ||||||||||||||||| |||||||||| ||||||||
Sbjct: 129227 tatccttttgttttgccagttctcttatctcgaacaacct 129266



 Score =  103 bits (52), Expect = 8e-19
 Identities = 73/80 (91%)
 Strand = Plus / Plus

                                                                          
Query: 341    tgtctttgtagagcctcgacatctgtcctctccttccaattgctcttacgcaatttaata 400
              ||||||| |||||| || ||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 129000 tgtctttctagagcatcaacatcggtcctctctttccaattgcttttacgcaatttaata 129059

                                  
Query: 401    gggcgattcccaacatactt 420
              ||||| ||||||||||||||
Sbjct: 129060 gggcggttcccaacatactt 129079



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 73/82 (89%)
 Strand = Plus / Plus

                                                                          
Query: 522    ttgccatattgaaggaggggaaccgtgaaaaggcttttgagagaacatcgtcattaactt 581
              ||||||| ||||||||||||||||||||||| ||||||||||| || |||||||| ||||
Sbjct: 129853 ttgccatgttgaaggaggggaaccgtgaaaaagcttttgagaggacgtcgtcattgactt 129912

                                    
Query: 582    cgttacctagatctccgcaaaa 603
              | || || |||||||| |||||
Sbjct: 129913 cattgcccagatctccacaaaa 129934



 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 76/87 (87%)
 Strand = Plus / Plus

                                                                          
Query: 620    tcgggccactcggtgagggtgggatcctcccangactgtccggctgctcgacgagggatt 679
              |||||||| ||||||||||||||||||||||| || || ||||| || || || ||||| 
Sbjct: 130033 tcgggccagtcggtgagggtgggatcctcccaggattggccggcggcgcggcgggggatg 130092

                                         
Query: 680    gtcttcttcttggcggcagggtcggag 706
              |  ||||||||||||||||||||||||
Sbjct: 130093 gctttcttcttggcggcagggtcggag 130119



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                          
Query: 274    aatagagctttacttgtgaagaatacccttcttttgtgttttaggtttcttctgaatatg 333
              |||| |||||||||||||||| ||||  |||||  |  |||||||||||||||| || ||
Sbjct: 128853 aatatagctttacttgtgaaggatacttttcttgggcattttaggtttcttctggatgtg 128912

                   
Query: 334    attct 338
              |||||
Sbjct: 128913 attct 128917
to top
>dbj|AP006848.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
            fosmid clone:OSJNOa199K18
          Length = 39582

 Score =  119 bits (60), Expect = 1e-23
 Identities = 90/100 (90%)
 Strand = Plus / Plus

                                                                        
Query: 422  ccattcatttcttttattgctgcagcgaggtctgtagggtttgaaaaactgacgaatcca 481
            |||||||||||||| |||||| |||| ||||| |||||||||||||| || || ||||||
Sbjct: 5163 ccattcatttctttaattgctccagcaaggtcagtagggtttgaaaagctcacaaatcca 5222

                                                    
Query: 482  taaccttttgttttgccagtcctcttatctctaacaacct 521
            || ||||||||||||||||| |||||||||| ||||||||
Sbjct: 5223 tatccttttgttttgccagttctcttatctcgaacaacct 5262



 Score =  103 bits (52), Expect = 8e-19
 Identities = 73/80 (91%)
 Strand = Plus / Plus

                                                                        
Query: 341  tgtctttgtagagcctcgacatctgtcctctccttccaattgctcttacgcaatttaata 400
            ||||||| |||||| || ||||| |||||||| ||||||||||| |||||||||||||||
Sbjct: 4996 tgtctttctagagcatcaacatcggtcctctctttccaattgcttttacgcaatttaata 5055

                                
Query: 401  gggcgattcccaacatactt 420
            ||||| ||||||||||||||
Sbjct: 5056 gggcggttcccaacatactt 5075



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 73/82 (89%)
 Strand = Plus / Plus

                                                                        
Query: 522  ttgccatattgaaggaggggaaccgtgaaaaggcttttgagagaacatcgtcattaactt 581
            ||||||| ||||||||||||||||||||||| ||||||||||| || |||||||| ||||
Sbjct: 5849 ttgccatgttgaaggaggggaaccgtgaaaaagcttttgagaggacgtcgtcattgactt 5908

                                  
Query: 582  cgttacctagatctccgcaaaa 603
            | || || |||||||| |||||
Sbjct: 5909 cattgcccagatctccacaaaa 5930



 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 76/87 (87%)
 Strand = Plus / Plus

                                                                        
Query: 620  tcgggccactcggtgagggtgggatcctcccangactgtccggctgctcgacgagggatt 679
            |||||||| ||||||||||||||||||||||| || || ||||| || || || ||||| 
Sbjct: 6029 tcgggccagtcggtgagggtgggatcctcccaggattggccggcggcgcggcgggggatg 6088

                                       
Query: 680  gtcttcttcttggcggcagggtcggag 706
            |  ||||||||||||||||||||||||
Sbjct: 6089 gctttcttcttggcggcagggtcggag 6115



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                        
Query: 274  aatagagctttacttgtgaagaatacccttcttttgtgttttaggtttcttctgaatatg 333
            |||| |||||||||||||||| ||||  |||||  |  |||||||||||||||| || ||
Sbjct: 4849 aatatagctttacttgtgaaggatacttttcttgggcattttaggtttcttctggatgtg 4908

                 
Query: 334  attct 338
            |||||
Sbjct: 4909 attct 4913
to top
>ref|NM_111321.2| Arabidopsis thaliana RNA binding / nucleic acid binding AT3G04500
           mRNA, complete cds
          Length = 1094

 Score =  115 bits (58), Expect = 2e-22
 Identities = 207/257 (80%)
 Strand = Plus / Minus

                                                                       
Query: 404 cgattcccaacatactttccattcatttcttttattgctgcagcgaggtctgtagggttt 463
           ||||| ||||||||||| ||||||||||||||||  ||||| || || || | ||| |||
Sbjct: 670 cgatttccaacatacttaccattcatttcttttaaggctgctgctagatccgcaggattt 611

                                                                       
Query: 464 gaaaaactgacgaatccataaccttttgttttgccagtcctcttatctctaacaaccttt 523
            | ||||| || || |||||||| || ||||| ||||||| |||||||||||  ||||| 
Sbjct: 610 aagaaactcacaaacccataacccttggttttaccagtccgcttatctctaatgaccttg 551

                                                                       
Query: 524 gccatattgaaggaggggaaccgtgaaaaggcttttgagagaacatcgtcattaacttcg 583
           ||||||||||||| |||||| |  | ||| ||||| || |||||||| ||||| ||||||
Sbjct: 550 gccatattgaaggtggggaatctagcaaatgctttggaaagaacatcatcattcacttcg 491

                                                                       
Query: 584 ttacctagatctccgcaaaacaacctgtagtcattctcgggccactcggtgagggtggga 643
           || || ||||| || || ||||  |  |||||||| || ||||| || |  || || |||
Sbjct: 490 ttcccaagatcaccacagaacagacgatagtcattttctggccattctgaaagagtagga 431

                            
Query: 644 tcctcccangactgtcc 660
           |||||||| ||||||||
Sbjct: 430 tcctcccaagactgtcc 414
to top
>gb|BT005571.1| Arabidopsis thaliana clone U50875 putative RRM-containing protein
           (At3g04500) mRNA, complete cds
          Length = 769

 Score =  115 bits (58), Expect = 2e-22
 Identities = 207/257 (80%)
 Strand = Plus / Minus

                                                                       
Query: 404 cgattcccaacatactttccattcatttcttttattgctgcagcgaggtctgtagggttt 463
           ||||| ||||||||||| ||||||||||||||||  ||||| || || || | ||| |||
Sbjct: 617 cgatttccaacatacttaccattcatttcttttaaggctgctgctagatccgcaggattt 558

                                                                       
Query: 464 gaaaaactgacgaatccataaccttttgttttgccagtcctcttatctctaacaaccttt 523
            | ||||| || || |||||||| || ||||| ||||||| |||||||||||  ||||| 
Sbjct: 557 aagaaactcacaaacccataacccttggttttaccagtccgcttatctctaatgaccttg 498

                                                                       
Query: 524 gccatattgaaggaggggaaccgtgaaaaggcttttgagagaacatcgtcattaacttcg 583
           ||||||||||||| |||||| |  | ||| ||||| || |||||||| ||||| ||||||
Sbjct: 497 gccatattgaaggtggggaatctagcaaatgctttggaaagaacatcatcattcacttcg 438

                                                                       
Query: 584 ttacctagatctccgcaaaacaacctgtagtcattctcgggccactcggtgagggtggga 643
           || || ||||| || || ||||  |  |||||||| || ||||| || |  || || |||
Sbjct: 437 ttcccaagatcaccacagaacagacgatagtcattttctggccattctgaaagagtagga 378

                            
Query: 644 tcctcccangactgtcc 660
           |||||||| ||||||||
Sbjct: 377 tcctcccaagactgtcc 361
to top
>dbj|AK118315.1| Arabidopsis thaliana At3g04500 mRNA for unknown protein, complete
           cds, clone: RAFL19-59-K02
          Length = 1095

 Score =  115 bits (58), Expect = 2e-22
 Identities = 207/257 (80%)
 Strand = Plus / Minus

                                                                       
Query: 404 cgattcccaacatactttccattcatttcttttattgctgcagcgaggtctgtagggttt 463
           ||||| ||||||||||| ||||||||||||||||  ||||| || || || | ||| |||
Sbjct: 670 cgatttccaacatacttaccattcatttcttttaaggctgctgctagatccgcaggattt 611

                                                                       
Query: 464 gaaaaactgacgaatccataaccttttgttttgccagtcctcttatctctaacaaccttt 523
            | ||||| || || |||||||| || ||||| ||||||| |||||||||||  ||||| 
Sbjct: 610 aagaaactcacaaacccataacccttggttttaccagtccgcttatctctaatgaccttg 551

                                                                       
Query: 524 gccatattgaaggaggggaaccgtgaaaaggcttttgagagaacatcgtcattaacttcg 583
           ||||||||||||| |||||| |  | ||| ||||| || |||||||| ||||| ||||||
Sbjct: 550 gccatattgaaggtggggaatctagcaaatgctttggaaagaacatcatcattcacttcg 491

                                                                       
Query: 584 ttacctagatctccgcaaaacaacctgtagtcattctcgggccactcggtgagggtggga 643
           || || ||||| || || ||||  |  |||||||| || ||||| || |  || || |||
Sbjct: 490 ttcccaagatcaccacagaacagacgatagtcattttctggccattctgaaagagtagga 431

                            
Query: 644 tcctcccangactgtcc 660
           |||||||| ||||||||
Sbjct: 430 tcctcccaagactgtcc 414
to top
>gb|BT012859.1| Lycopersicon esculentum clone 113947R, mRNA sequence
          Length = 1178

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 147/183 (80%)
 Strand = Plus / Minus

                                                                       
Query: 394 tttaatagggcgattcccaacatactttccattcatttcttttattgctgcagcgaggtc 453
           ||||||||| || || |||||||||||||||||||||| ||| | ||| ||||| || ||
Sbjct: 695 tttaataggccggttaccaacatactttccattcatttttttaagtgccgcagcaagatc 636

                                                                       
Query: 454 tgtagggtttgaaaaactgacgaatccataaccttttgttttgccagtcctcttatctct 513
               || || |||||||| || |||||||| ||  | || || ||||||| ||| |||||
Sbjct: 635 caatggattggaaaaactcacaaatccatatcccctggtcttaccagtccgcttgtctct 576

                                                                       
Query: 514 aacaacctttgccatattgaaggaggggaaccgtgaaaaggcttttgagagaacatcgtc 573
            |||||||| |||||||| || |  || |||| ||||||||||||||| || ||||| ||
Sbjct: 575 tacaaccttagccatattaaaagttggaaaccttgaaaaggcttttgataggacatcatc 516

              
Query: 574 att 576
           |||
Sbjct: 515 att 513
to top
>emb|BX824315.1|CNS0A7R6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH39ZE10 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 943

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 93/112 (83%)
 Strand = Plus / Minus

                                                                       
Query: 404 cgattcccaacatactttccattcatttcttttattgctgcagcgaggtctgtagggttt 463
           ||||| ||||||||||| ||||||||||||||||  ||||| || || || | ||| |||
Sbjct: 746 cgatttccaacatacttaccattcatttcttttaaggctgctgctagatccgcaggattt 687

                                                               
Query: 464 gaaaaactgacgaatccataaccttttgttttgccagtcctcttatctctaa 515
            | ||||| || || |||||||| || ||||| ||||||| |||||||||||
Sbjct: 686 aagaaactcacaaacccataacccttggttttaccagtccgcttatctctaa 635



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 109/137 (79%)
 Strand = Plus / Minus

                                                                       
Query: 524 gccatattgaaggaggggaaccgtgaaaaggcttttgagagaacatcgtcattaacttcg 583
           ||||||||||||| |||||| |  | ||| ||||| || |||||||| ||||| ||||||
Sbjct: 457 gccatattgaaggtggggaatctagcaaatgctttggaaagaacatcatcattcacttcg 398

                                                                       
Query: 584 ttacctagatctccgcaaaacaacctgtagtcattctcgggccactcggtgagggtggga 643
           || || ||||| || || ||||  |  |||||||| || ||||| || |  || || |||
Sbjct: 397 ttcccaagatcaccacagaacagacgatagtcattttctggccattctgaaagagtagga 338

                            
Query: 644 tcctcccangactgtcc 660
           |||||||| ||||||||
Sbjct: 337 tcctcccaagactgtcc 321
to top
>gb|AC022287.9|ATAC022287 Arabidopsis thaliana chromosome III BAC T27C4 genomic sequence,
             complete sequence
          Length = 71616

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 77/94 (81%)
 Strand = Plus / Plus

                                                                         
Query: 422   ccattcatttcttttattgctgcagcgaggtctgtagggtttgaaaaactgacgaatcca 481
             ||||||||||||||||  ||||| || || || | ||| ||| | ||||| || || |||
Sbjct: 57306 ccattcatttcttttaaggctgctgctagatccgcaggatttaagaaactcacaaaccca 57365

                                               
Query: 482   taaccttttgttttgccagtcctcttatctctaa 515
             ||||| || ||||| ||||||| |||||||||||
Sbjct: 57366 taacccttggttttaccagtccgcttatctctaa 57399



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                         
Query: 518   acctttgccatattgaaggaggggaaccgtgaaaaggcttttgagagaacatcgtcatta 577
             ||||| ||||||||||||| |||||| |  | ||| ||||| || |||||||| ||||| 
Sbjct: 57669 accttggccatattgaaggtggggaatctagcaaatgctttggaaagaacatcatcattc 57728

                              
Query: 578   acttcgttacctagatc 594
             |||||||| || |||||
Sbjct: 57729 acttcgttcccaagatc 57745
to top
>ref|XM_636963.1| Dictyostelium discoideum ssRNA-binding protein (DDB0214897),
           partial mRNA
          Length = 861

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                       
Query: 371 tccttccaattgctcttacgcaatttaatagggcgattcccaacatactttccattcatt 430
           |||||||| || || ||||| |||||||| || ||||| |||| ||| ||||||||||||
Sbjct: 836 tccttccatttacttttacgtaatttaattggacgattaccaatatattttccattcatt 777
to top
>emb|Y07952.1|DDSSDBP D.discoideum mRNA for ssRNA-binding protein
          Length = 1007

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                       
Query: 371 tccttccaattgctcttacgcaatttaatagggcgattcccaacatactttccattcatt 430
           |||||||| || || ||||| |||||||| || ||||| |||| ||| ||||||||||||
Sbjct: 868 tccttccatttacttttacgtaatttaattggacgattaccaatatattttccattcatt 809
to top
>gb|AC024610.6| Homo sapiens chromosome 17, clone RP11-17M24, complete sequence
          Length = 176291

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 205    atgtatctttcagatgtccttcat 228
              ||||||||||||||||||||||||
Sbjct: 168506 atgtatctttcagatgtccttcat 168529
to top
>gb|AC078907.7| Homo sapiens chromosome 17, clone RP11-160L11, complete sequence
          Length = 104234

 Score = 48.1 bits (24), Expect = 0.040
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 205   atgtatctttcagatgtccttcat 228
             ||||||||||||||||||||||||
Sbjct: 58139 atgtatctttcagatgtccttcat 58116
to top
>dbj|AK115225.1| Ciona intestinalis cDNA, clone:cieg040e13, full insert sequence
          Length = 1713

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 361  atctgtcctctccttccaattgctct 386
            ||||||||||| ||||||||||||||
Sbjct: 1110 atctgtcctcttcttccaattgctct 1085
to top
>emb|AL845280.4| Mouse DNA sequence from clone RP23-265L1 on chromosome X, complete
             sequence
          Length = 142846

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 418   ctttccattcatttcttttatt 439
             ||||||||||||||||||||||
Sbjct: 98189 ctttccattcatttcttttatt 98168
to top
>gb|AC135288.1| Solanum demissum chromosome 5 BAC PGEC219 genomic sequence, complete
             sequence
          Length = 124895

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 419   tttccattcatttcttttatt 439
             |||||||||||||||||||||
Sbjct: 40167 tttccattcatttcttttatt 40147
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 49       attattaatacaagaaacact 69
                |||||||||||||||||||||
Sbjct: 21089022 attattaatacaagaaacact 21089042
to top
>ref|XM_668220.1| Plasmodium berghei strain ANKA hypothetical protein (PB300543.00.0)
           partial mRNA
          Length = 771

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 106 acccagatagaacagaacatt 126
           |||||||||||||||||||||
Sbjct: 151 acccagatagaacagaacatt 131
to top
>ref|XM_673175.1| Plasmodium berghei strain ANKA glycerol-3-phosphate dehydrogenase
           (PB000629.01.0) partial mRNA
          Length = 1056

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 106 acccagatagaacagaacatt 126
           |||||||||||||||||||||
Sbjct: 439 acccagatagaacagaacatt 419
to top
>gb|AC155648.14| Mus musculus 6 BAC RP24-88B16 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 199446

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 358   gacatctgtcctctccttcca 378
             |||||||||||||||||||||
Sbjct: 22914 gacatctgtcctctccttcca 22894
to top
>gb|AC087534.8| Homo sapiens chromosome 18, clone RP11-716B20, complete sequence
          Length = 176966

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 71    attgtaactcttgcaaatgtaaaaa 95
             |||||||||||||||||| ||||||
Sbjct: 68071 attgtaactcttgcaaatataaaaa 68047
to top
>gb|AC007638.8| Homo sapiens chromosome 17, clone RP11-515O17, complete sequence
          Length = 182051

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 306    tttgtgttttaggtttcttct 326
              |||||||||||||||||||||
Sbjct: 123340 tttgtgttttaggtttcttct 123320
to top
>gb|AC128645.5| Oryza sativa chromosome 3 BAC OSJNBb0016P23 genomic sequence, complete
             sequence
          Length = 131250

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 49    attattaatacaagaaacact 69
             |||||||||||||||||||||
Sbjct: 66778 attattaatacaagaaacact 66798
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 49       attattaatacaagaaacact 69
                |||||||||||||||||||||
Sbjct: 21082051 attattaatacaagaaacact 21082071
to top
>gb|AC009891.2|AC009891 Genomic Sequence for Homo sapiens clone H_NH0332F09, Chromosome 18,
             complete sequence
          Length = 194673

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 71    attgtaactcttgcaaatgtaaaaa 95
             |||||||||||||||||| ||||||
Sbjct: 66924 attgtaactcttgcaaatataaaaa 66948
to top
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 184     tgctgtaagactgaacagccc 204
               |||||||||||||||||||||
Sbjct: 1512539 tgctgtaagactgaacagccc 1512559
to top
>emb|AL845366.6| Zebrafish DNA sequence from clone CH211-167C22 in linkage group 20,
            complete sequence
          Length = 149189

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 262  ccggtacaacccaatagagct 282
            |||||||||||||||||||||
Sbjct: 8076 ccggtacaacccaatagagct 8096
to top
>gb|AC166288.7| Mus musculus chromosome 3, clone RP23-464M10, complete sequence
          Length = 183724

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 36    aaaacaaagnctgattattaata 58
             ||||||||| |||||||||||||
Sbjct: 20123 aaaacaaagactgattattaata 20101
to top
>gb|AC150387.2| Branchiostoma floridae clone CH302-103N24, complete sequence
          Length = 193376

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 31    acaccaaaacaaagnctgattat 53
             |||||||||||||| ||||||||
Sbjct: 67964 acaccaaaacaaagactgattat 67942
to top
>gb|AC166646.4| Mus musculus chromosome 3, clone RP24-400P18, complete sequence
          Length = 176864

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 36    aaaacaaagnctgattattaata 58
             ||||||||| |||||||||||||
Sbjct: 19290 aaaacaaagactgattattaata 19312
to top
>gb|AE001392.2| Plasmodium falciparum 3D7 chromosome 2 section 29 of 73 of the
            complete sequence
          Length = 11609

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 305  ttttgtgttttaggtttcttctgaatat 332
            |||||||||||||||||| | |||||||
Sbjct: 1688 ttttgtgttttaggtttcatatgaatat 1661
to top
>gb|AC104705.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1008_D08,
            complete sequence
          Length = 94286

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 505  cttatctctaacaacctttg 524
            ||||||||||||||||||||
Sbjct: 9240 cttatctctaacaacctttg 9221
to top
>gb|AC158936.4| Mus musculus chromosome 3, clone RP23-235P13, complete sequence
          Length = 160709

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 302   ttcttttgtgttttaggtttcttc 325
             ||||||||| ||||||||||||||
Sbjct: 18051 ttcttttgttttttaggtttcttc 18028
to top
>gb|AY810567.1| Schistosoma japonicum SJCHGC03253 protein mRNA, partial cds
          Length = 643

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 401 gggcgattcccaacatactttccattcatttc 432
           ||||| || ||||||||||| |||||||||||
Sbjct: 385 gggcggttaccaacatacttaccattcatttc 354
to top
>gb|AC130599.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0016G07, complete sequence
          Length = 123167

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 505   cttatctctaacaacctttg 524
             ||||||||||||||||||||
Sbjct: 76141 cttatctctaacaacctttg 76122
to top
>gb|AC127308.3| Mus musculus BAC clone RP23-293B20 from 8, complete sequence
          Length = 211878

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    acaagaaacactcattgtaa 77
             ||||||||||||||||||||
Sbjct: 51146 acaagaaacactcattgtaa 51127
to top
>emb|CR847832.18| Zebrafish DNA sequence from clone DKEY-30K23 in linkage group 8, complete
              sequence
          Length = 135277

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 418    ctttccattcatttctttta 437
              ||||||||||||||||||||
Sbjct: 129554 ctttccattcatttctttta 129535
to top
>gb|AC121986.2| Mus musculus BAC clone RP24-293I7 from 10, complete sequence
          Length = 182686

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 546    gtgaaaaggcttttgagaga 565
              ||||||||||||||||||||
Sbjct: 156206 gtgaaaaggcttttgagaga 156225
to top
>gb|AC006151.4| Homo sapiens BAC clone GS1-286B23 from 7, complete sequence
          Length = 136006

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 424    attcatttcttttattgctg 443
              ||||||||||||||||||||
Sbjct: 117580 attcatttcttttattgctg 117561
to top
>gb|AC104884.10| Mus musculus chromosome 3, clone RP24-281E9, complete sequence
          Length = 168622

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 302    ttcttttgtgttttaggtttcttc 325
              ||||||||| ||||||||||||||
Sbjct: 163220 ttcttttgttttttaggtttcttc 163243
to top
>emb|AL592430.8| Human DNA sequence from clone RP11-388P9 on chromosome 10 Contains part
             of the ANK3 gene for ankyrin 3, node of Ranvier (ankyrin
             G) and a novel gene, complete sequence
          Length = 145136

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 318   gtttcttctgaatatgattctttt 341
             |||||||||||||||||| |||||
Sbjct: 66305 gtttcttctgaatatgatactttt 66282
to top
>emb|AL356321.9| Human DNA sequence from clone RP11-282M24 on chromosome 13, complete
              sequence
          Length = 162441

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 336    tcttttgtctttgtagagcc 355
              ||||||||||||||||||||
Sbjct: 110690 tcttttgtctttgtagagcc 110709
to top
>emb|AL354777.16| Human DNA sequence from clone RP11-33K8 on chromosome 9, complete
              sequence
          Length = 152748

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 412    aacatactttccattcatttcttt 435
              ||||||||||||||| ||||||||
Sbjct: 136960 aacatactttccattaatttcttt 136983
to top
>gb|AC092898.15| Homo sapiens 3 BAC RP11-321A2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 122934

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 331   atgattcttttgtctttgta 350
             ||||||||||||||||||||
Sbjct: 81466 atgattcttttgtctttgta 81447
to top
>gb|AC153566.12| Mus musculus 10 BAC RP23-5H4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 208610

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 546    gtgaaaaggcttttgagaga 565
              ||||||||||||||||||||
Sbjct: 185165 gtgaaaaggcttttgagaga 185146
to top
>gb|AC105001.3| Homo sapiens chromosome 8, clone CTD-2135J3, complete sequence
          Length = 157442

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 314    ttaggtttcttctgaatatgattc 337
              ||||||||||||||||| ||||||
Sbjct: 153524 ttaggtttcttctgaatctgattc 153501
to top
>gb|AC093797.3| Homo sapiens BAC clone RP11-301L8 from 4, complete sequence
          Length = 169814

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 385    cttacgcaatttaatagggc 404
              ||||||||||||||||||||
Sbjct: 130469 cttacgcaatttaatagggc 130488
to top
>gb|AC011008.10| Homo sapiens chromosome 8, clone RP11-177H2, complete sequence
          Length = 162245

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 314    ttaggtttcttctgaatatgattc 337
              ||||||||||||||||| ||||||
Sbjct: 103947 ttaggtttcttctgaatctgattc 103970
to top
>gb|AC151598.2| Medicago truncatula chromosome 2 BAC clone mte1-49g8, complete sequence
          Length = 143328

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 421    tccattcatttcttttattg 440
              ||||||||||||||||||||
Sbjct: 107602 tccattcatttcttttattg 107621
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 505     cttatctctaacaacctttg 524
               ||||||||||||||||||||
Sbjct: 6704979 cttatctctaacaacctttg 6704960
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 214      tcagatgtccttcatccaaa 233
                ||||||||||||||||||||
Sbjct: 14236570 tcagatgtccttcatccaaa 14236589
to top
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 631    ggtgagggtgggatcctccc 650
              ||||||||||||||||||||
Sbjct: 787842 ggtgagggtgggatcctccc 787861
to top
>dbj|AP004151.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1008_E02
          Length = 125860

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 214   tcagatgtccttcatccaaa 233
             ||||||||||||||||||||
Sbjct: 41720 tcagatgtccttcatccaaa 41739
to top
>emb|AJ242744.1|KAE242744 Klebsiella aerogenes partial phnJ gene for C-P lyase subunit
          Length = 410

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 460 gtttgaaaaactgacgaatc 479
           ||||||||||||||||||||
Sbjct: 46  gtttgaaaaactgacgaatc 27
to top
>ref|XM_312879.2| Anopheles gambiae str. PEST ENSANGP00000014812
           (ENSANGG00000012323), partial mRNA
          Length = 689

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 654 actgtccggctgctcgacgaggga 677
           ||||||||||||||||||| ||||
Sbjct: 243 actgtccggctgctcgacgcggga 266
to top
>emb|AL954843.8| Zebrafish DNA sequence from clone DKEY-149K8 in linkage group 15,
              complete sequence
          Length = 204599

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 214    tcagatgtccttcatccaaa 233
              ||||||||||||||||||||
Sbjct: 155296 tcagatgtccttcatccaaa 155277
to top
>gb|U22412.1|CFU22412 Canis familiaris beta-A3/A1 crystalline gene, partial cds
          Length = 734

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 74 gtaactcttgcaaatgtaaa 93
          ||||||||||||||||||||
Sbjct: 45 gtaactcttgcaaatgtaaa 64


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,266,077
Number of Sequences: 3902068
Number of extensions: 7266077
Number of successful extensions: 147758
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 147327
Number of HSP's gapped (non-prelim): 420
length of query: 706
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 683
effective length of database: 17,143,297,704
effective search space: 11708872331832
effective search space used: 11708872331832
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top